Literature DB >> 21587948

(2-Decan-amido-eth-yl)dimethyl-amine N-oxide.

Agnieszka Lewińska1.   

Abstract

In the title compound, C(14)H(30)N(2)O(2), the almost planar nonyl chains are fully extended: the N-C-C-N torsion angle of -161.95 (8)° indicates an anti conformation. The crystal structure features N-H⋯O hydrogen bonds and C-H⋯O inter-actions.

Entities:  

Year:  2010        PMID: 21587948      PMCID: PMC3006747          DOI: 10.1107/S1600536810022270

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the bond lengths and angles of nonyl chains, see: Low et al. (1999 ▶); Kato & Ikemori (2003 ▶); Ulrich et al. (1990 ▶). For related structures containing the amide group, see: Belicchi-Ferrari et al. (2007 ▶); Jeffrey & Maluszynska (1989 ▶). For N—O bond lengths, see: Katrusiak et al. (1987 ▶); Kemmitt et al. (2002 ▶); Maia et al. (1984 ▶); Boese et al. (1999 ▶); Palatinus & Damay (2009 ▶). For a related structure, see: Sauer et al. (2003 ▶). For the synthesis, see: Piłakowska-Pietras et al. (2008 ▶). For hydrogen-bond motifs, see: Bernstein et al. (1995 ▶); Rospenk et al. (1989 ▶).

Experimental

Crystal data

C14H30N2O2 M = 258.40 Triclinic, a = 5.378 (2) Å b = 8.113 (4) Å c = 17.801 (5) Å α = 79.55 (4)° β = 86.38 (3)° γ = 86.36 (4)° V = 761.2 (5) Å3 Z = 2 Mo Kα radiation μ = 0.08 mm−1 T = 100 K 0.23 × 0.19 × 0.08 mm

Data collection

Oxford Diffraction Xcalibur Sapphire2 diffractometer 10305 measured reflections 3149 independent reflections 2746 reflections with I > 2σ(I) R int = 0.018

Refinement

R[F 2 > 2σ(F 2)] = 0.033 wR(F 2) = 0.094 S = 1.06 3149 reflections 169 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.33 e Å−3 Δρmin = −0.16 e Å−3 Data collection: CrysAlis CCD (Oxford Diffraction, 2007 ▶); cell refinement: CrysAlis RED (Oxford Diffraction, 2007 ▶); data reduction: CrysAlis RED; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536810022270/ds2034sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810022270/ds2034Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C14H30N2O2Z = 2
Mr = 258.40F(000) = 288
Triclinic, P1Dx = 1.127 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 5.378 (2) ÅCell parameters from 9030 reflections
b = 8.113 (4) Åθ = 3–36°
c = 17.801 (5) ŵ = 0.08 mm1
α = 79.55 (4)°T = 100 K
β = 86.38 (3)°Block, colorless
γ = 86.36 (4)°0.23 × 0.19 × 0.08 mm
V = 761.2 (5) Å3
Oxford Diffraction Xcalibur Sapphire2 (large Be window) diffractometer2746 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.018
graphiteθmax = 26.5°, θmin = 3.0°
ω scansh = −6→6
10305 measured reflectionsk = −8→10
3149 independent reflectionsl = −22→22
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.033Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.094H atoms treated by a mixture of independent and constrained refinement
S = 1.06w = 1/[σ2(Fo2) + (0.0535P)2 + 0.1328P] where P = (Fo2 + 2Fc2)/3
3149 reflections(Δ/σ)max = 0.001
169 parametersΔρmax = 0.33 e Å3
0 restraintsΔρmin = −0.15 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O1−0.14655 (12)0.29531 (8)0.63607 (4)0.01841 (17)
O20.61547 (12)0.19768 (8)0.42458 (4)0.01908 (17)
N1−0.00050 (14)0.15787 (9)0.61997 (4)0.01399 (18)
N20.31670 (14)0.39834 (10)0.44253 (4)0.01548 (18)
C10.11161 (17)0.19110 (11)0.53929 (5)0.0149 (2)
H1A−0.02450.21330.50330.018*
H1B0.21020.08950.52910.018*
C20.27914 (17)0.33925 (11)0.52434 (5)0.01533 (19)
H2A0.20150.43130.54900.018*
H2B0.44220.30470.54680.018*
C30.48478 (16)0.32380 (11)0.39906 (5)0.01460 (19)
C40.49927 (17)0.40400 (12)0.31534 (5)0.0169 (2)
H4A0.40900.51540.30940.020*
H4B0.41290.33400.28610.020*
C50.76504 (17)0.42604 (12)0.28085 (5)0.0175 (2)
H5A0.85870.48570.31280.021*
H5B0.85040.31440.28050.021*
C60.76453 (18)0.52507 (12)0.19949 (5)0.0187 (2)
H6A0.66950.63350.20000.022*
H6B0.67650.46200.16750.022*
C71.02383 (18)0.55974 (13)0.16275 (6)0.0210 (2)
H7A1.11890.45150.16170.025*
H7B1.11250.62270.19460.025*
C81.01841 (18)0.65973 (13)0.08150 (5)0.0217 (2)
H8A0.93210.59570.04960.026*
H8B0.92020.76680.08250.026*
C91.27600 (19)0.69820 (13)0.04450 (6)0.0218 (2)
H9A1.36070.76430.07590.026*
H9B1.37530.59110.04460.026*
C101.27329 (19)0.79467 (13)−0.03721 (6)0.0218 (2)
H10A1.17360.9017−0.03770.026*
H10B1.19070.7284−0.06900.026*
C111.5337 (2)0.83259 (13)−0.07251 (6)0.0246 (2)
H11A1.61540.8998−0.04090.030*
H11B1.63380.7256−0.07140.030*
C121.5335 (2)0.92734 (15)−0.15446 (6)0.0327 (3)
H12A1.70550.9478−0.17380.049*
H12B1.43831.0348−0.15590.049*
H12C1.45660.8605−0.18650.049*
C130.19656 (17)0.11555 (12)0.67652 (5)0.0181 (2)
H13A0.11860.09640.72840.027*
H13B0.30770.20870.67090.027*
H13C0.29310.01380.66750.027*
C14−0.15989 (17)0.01185 (11)0.62702 (5)0.0180 (2)
H14A−0.2401−0.01030.67860.027*
H14B−0.0565−0.08720.61790.027*
H14C−0.28810.03690.58920.027*
H20.246 (2)0.4950 (17)0.4221 (7)0.027 (3)*
U11U22U33U12U13U23
O10.0201 (3)0.0152 (3)0.0181 (3)0.0071 (3)0.0033 (3)−0.0022 (3)
O20.0176 (3)0.0169 (3)0.0207 (4)0.0037 (3)0.0009 (3)−0.0003 (3)
N10.0136 (4)0.0137 (4)0.0135 (4)0.0021 (3)0.0010 (3)−0.0008 (3)
N20.0151 (4)0.0140 (4)0.0154 (4)0.0010 (3)0.0015 (3)0.0013 (3)
C10.0156 (4)0.0163 (4)0.0119 (4)−0.0004 (3)0.0012 (3)−0.0013 (3)
C20.0149 (4)0.0163 (4)0.0139 (4)−0.0006 (3)0.0010 (3)−0.0007 (3)
C30.0124 (4)0.0136 (4)0.0174 (4)−0.0024 (3)0.0002 (3)−0.0017 (3)
C40.0153 (4)0.0182 (5)0.0160 (5)0.0009 (3)0.0010 (3)−0.0015 (3)
C50.0158 (4)0.0186 (5)0.0163 (5)0.0011 (3)0.0026 (3)−0.0002 (4)
C60.0180 (5)0.0206 (5)0.0159 (5)−0.0002 (4)0.0019 (4)−0.0005 (4)
C70.0189 (5)0.0248 (5)0.0170 (5)−0.0003 (4)0.0024 (4)0.0012 (4)
C80.0209 (5)0.0260 (5)0.0161 (5)−0.0018 (4)0.0018 (4)0.0013 (4)
C90.0217 (5)0.0244 (5)0.0171 (5)−0.0020 (4)0.0021 (4)0.0012 (4)
C100.0239 (5)0.0236 (5)0.0165 (5)−0.0029 (4)0.0015 (4)0.0001 (4)
C110.0267 (5)0.0266 (5)0.0183 (5)−0.0032 (4)0.0038 (4)0.0007 (4)
C120.0408 (7)0.0354 (6)0.0193 (5)−0.0086 (5)0.0057 (5)0.0016 (4)
C130.0177 (4)0.0208 (5)0.0145 (4)0.0018 (4)−0.0030 (3)0.0001 (4)
C140.0157 (4)0.0168 (5)0.0201 (5)−0.0021 (3)0.0027 (4)−0.0008 (4)
O1—N11.385 (2)C5—H5A0.9900
O2—C31.237 (2)C5—H5B0.9900
N1—C11.506 (2)C6—H6A0.9900
N1—C131.489 (2)C6—H6B0.9900
N1—C141.489 (2)C7—H7A0.9900
N2—C21.454 (2)C7—H7B0.9900
N2—C31.340 (2)C8—H8A0.9900
N2—H20.87 (2)C8—H8B0.9900
C1—C21.523 (2)C9—H9A0.9900
C3—C41.514 (2)C9—H9B0.9900
C4—C51.528 (2)C10—H10A0.9900
C5—C61.523 (2)C10—H10B0.9900
C6—C71.524 (2)C11—H11A0.9900
C7—C81.525 (2)C11—H11B0.9900
C8—C91.522 (2)C12—H12A0.9800
C9—C101.522 (2)C12—H12B0.9800
C10—C111.524 (2)C12—H12C0.9800
C11—C121.520 (2)C13—H13A0.9800
C1—H1A0.9900C13—H13B0.9800
C1—H1B0.9900C13—H13C0.9800
C2—H2A0.9900C14—H14A0.9800
C2—H2B0.9900C14—H14B0.9800
C4—H4A0.9900C14—H14C0.9800
C4—H4B0.9900
O1—N1—C1111.04 (7)C7—C6—H6B109.00
O1—N1—C13109.25 (7)H6A—C6—H6B108.00
O1—N1—C14108.99 (7)C6—C7—H7A109.00
C1—N1—C13111.29 (7)C6—C7—H7B109.00
C1—N1—C14107.63 (7)C8—C7—H7A109.00
C13—N1—C14108.58 (8)C8—C7—H7B109.00
C2—N2—C3122.22 (8)H7A—C7—H7B108.00
C3—N2—H2117.9 (8)C7—C8—H8A109.00
C2—N2—H2119.1 (8)C7—C8—H8B109.00
N1—C1—C2112.89 (8)C9—C8—H8A109.00
N2—C2—C1110.07 (8)C9—C8—H8B109.00
O2—C3—N2123.01 (9)H8A—C8—H8B108.00
O2—C3—C4122.25 (9)C8—C9—H9A109.00
N2—C3—C4114.73 (8)C8—C9—H9B109.00
C3—C4—C5114.08 (8)C10—C9—H9A109.00
C4—C5—C6110.99 (8)C10—C9—H9B109.00
C5—C6—C7113.98 (8)H9A—C9—H9B108.00
C6—C7—C8112.97 (8)C9—C10—H10A109.00
C7—C8—C9113.64 (8)C9—C10—H10B109.00
C8—C9—C10114.14 (9)C11—C10—H10A109.00
C9—C10—C11112.91 (8)C11—C10—H10B109.00
C10—C11—C12113.41 (9)H10A—C10—H10B108.00
N1—C1—H1A109.00C10—C11—H11A109.00
N1—C1—H1B109.00C10—C11—H11B109.00
C2—C1—H1A109.00C12—C11—H11A109.00
C2—C1—H1B109.00C12—C11—H11B109.00
H1A—C1—H1B108.00H11A—C11—H11B108.00
N2—C2—H2A110.00C11—C12—H12A109.00
N2—C2—H2B110.00C11—C12—H12B109.00
C1—C2—H2A110.00C11—C12—H12C109.00
C1—C2—H2B110.00H12A—C12—H12B110.00
H2A—C2—H2B108.00H12A—C12—H12C109.00
C3—C4—H4A109.00H12B—C12—H12C109.00
C3—C4—H4B109.00N1—C13—H13A109.00
C5—C4—H4A109.00N1—C13—H13B109.00
C5—C4—H4B109.00N1—C13—H13C110.00
H4A—C4—H4B108.00H13A—C13—H13B109.00
C4—C5—H5A109.00H13A—C13—H13C109.00
C4—C5—H5B109.00H13B—C13—H13C109.00
C6—C5—H5A109.00N1—C14—H14A109.00
C6—C5—H5B109.00N1—C14—H14B109.00
H5A—C5—H5B108.00N1—C14—H14C109.00
C5—C6—H6A109.00H14A—C14—H14B110.00
C5—C6—H6B109.00H14A—C14—H14C109.00
C7—C6—H6A109.00H14B—C14—H14C109.00
O1—N1—C1—C260.52 (9)N2—C3—C4—C5135.19 (9)
C13—N1—C1—C2−61.41 (9)C3—C4—C5—C6−173.49 (8)
C14—N1—C1—C2179.74 (8)C4—C5—C6—C7177.04 (8)
C3—N2—C2—C1−81.38 (10)C5—C6—C7—C8−179.74 (9)
C2—N2—C3—O21.92 (13)C6—C7—C8—C9178.94 (9)
C2—N2—C3—C4−179.36 (8)C7—C8—C9—C10178.76 (9)
N1—C1—C2—N2−161.95 (8)C8—C9—C10—C11179.52 (9)
O2—C3—C4—C5−46.08 (12)C9—C10—C11—C12179.38 (9)
D—H···AD—HH···AD···AD—H···A
N2—H2···O1i0.87 (2)1.89 (2)2.753 (2)168.9 (2)
C1—H1A···O2ii0.992.483.453 (2)166
C1—H1B···O2iii0.992.473.363 (2)150
C4—H4A···O1i0.992.323.204 (2)148
C13—H13C···O2iii0.982.583.438 (2)146
C14—H14B···O2iii0.982.603.449 (2)145
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N2—H2⋯O1i0.87 (2)1.89 (2)2.753 (2)168.9 (2)
C1—H1A⋯O2ii0.992.483.453 (2)166
C1—H1B⋯O2iii0.992.473.363 (2)150
C4—H4A⋯O1i0.992.323.204 (2)148
C13—H13C⋯O2iii0.982.583.438 (2)146
C14—H14B⋯O2iii0.982.603.449 (2)145

Symmetry codes: (i) ; (ii) ; (iii) .

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