Literature DB >> 21587911

N-Cyclo-hexyl-benzamide.

Islam Ullah Khan, Rashid Javaid, Shahzad Sharif, Edward R T Tiekink.   

Abstract

The structure of the title compound, C(13)H(17)NO, features an anti disposition of the N-H and carbonyl groups. The amide group is twisted with respect to the benzene ring [N-C(=O)-C-C torsion angle = -30.8 (4)°]. In the crystal, C(4) chains propagating in [100] are formed by inter-molecular N-H⋯O hydrogen bonds. Weak C-H⋯π inter-actions link the chains into sheets.

Entities:  

Year:  2010        PMID: 21587911      PMCID: PMC3007063          DOI: 10.1107/S1600536810022609

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For biological applications of benzamides, see: Clark et al. (1988 ▶); Leander et al. (1988 ▶); Diouf et al. (1997 ▶).

Experimental

Crystal data

C13H17NO M = 203.28 Monoclinic, a = 5.2372 (3) Å b = 6.5841 (4) Å c = 16.6029 (12) Å β = 91.176 (2)° V = 572.38 (6) Å3 Z = 2 Mo Kα radiation μ = 0.07 mm−1 T = 293 K 0.28 × 0.17 × 0.12 mm

Data collection

Bruker APEXII CCD diffractometer 5479 measured reflections 1423 independent reflections 1105 reflections with I > 2σ(I) R int = 0.033

Refinement

R[F 2 > 2σ(F 2)] = 0.045 wR(F 2) = 0.163 S = 1.07 1423 reflections 140 parameters 1 restraint H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.22 e Å−3 Δρmin = −0.21 e Å−3 Data collection: APEX2 (Bruker, 2007 ▶); cell refinement: SAINT (Bruker, 2007 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶) and DIAMOND (Brandenburg, 2006 ▶); software used to prepare material for publication: publCIF (Westrip, 2010 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810022609/hb5496sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810022609/hb5496Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C13H17NOZ = 2
Mr = 203.28F(000) = 220
Monoclinic, P21Dx = 1.179 Mg m3
Hall symbol: P 2ybMo Kα radiation, λ = 0.71073 Å
a = 5.2372 (3) ŵ = 0.07 mm1
b = 6.5841 (4) ÅT = 293 K
c = 16.6029 (12) ÅBlock, colourless
β = 91.176 (2)°0.28 × 0.17 × 0.12 mm
V = 572.38 (6) Å3
Bruker APEXII CCD diffractometer1105 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.033
graphiteθmax = 27.5°, θmin = 1.2°
φ and ω scansh = −6→6
5479 measured reflectionsk = −8→8
1423 independent reflectionsl = −21→21
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.045H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.163w = 1/[σ2(Fo2) + (0.1083P)2] where P = (Fo2 + 2Fc2)/3
S = 1.07(Δ/σ)max < 0.001
1423 reflectionsΔρmax = 0.22 e Å3
140 parametersΔρmin = −0.21 e Å3
1 restraintAbsolute structure: unk
Primary atom site location: structure-invariant direct methods
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.7158 (3)0.9885 (4)0.23591 (14)0.0636 (8)
N10.2952 (5)0.9238 (4)0.24441 (15)0.0424 (6)
H1n0.157 (6)0.969 (6)0.2345 (18)0.045 (9)*
C10.4923 (5)1.0267 (4)0.21584 (18)0.0415 (7)
C20.4362 (5)1.1979 (5)0.15919 (15)0.0381 (6)
C30.2245 (5)1.2004 (6)0.10682 (16)0.0460 (7)
H30.10771.09410.10710.055*
C40.1894 (6)1.3614 (7)0.05468 (18)0.0575 (9)
H40.04881.36200.01950.069*
C50.3571 (6)1.5201 (6)0.05375 (19)0.0602 (10)
H50.33211.62700.01790.072*
C60.5654 (6)1.5203 (6)0.1069 (2)0.0586 (9)
H60.67851.62920.10760.070*
C70.6038 (6)1.3593 (6)0.15818 (19)0.0495 (8)
H70.74551.35910.19290.059*
C80.3233 (5)0.7589 (4)0.30240 (17)0.0405 (7)
H80.49040.69580.29450.049*
C90.3184 (8)0.8399 (6)0.3885 (2)0.0611 (9)
H9A0.45700.93580.39680.073*
H9B0.15880.91080.39690.073*
C100.3452 (8)0.6680 (7)0.4484 (2)0.0683 (11)
H10A0.51400.60880.44430.082*
H10B0.32960.72180.50240.082*
C110.1481 (6)0.5051 (6)0.4349 (2)0.0636 (10)
H11A−0.01980.55930.44610.076*
H11B0.18140.39370.47190.076*
C120.1507 (7)0.4266 (6)0.3493 (2)0.0620 (9)
H12A0.01200.33060.34130.074*
H12B0.31000.35560.34050.074*
C130.1224 (6)0.5985 (5)0.2888 (2)0.0482 (8)
H13A0.13620.54440.23470.058*
H13B−0.04550.65910.29340.058*
U11U22U33U12U13U23
O10.0330 (10)0.0681 (17)0.0893 (17)0.0023 (11)−0.0042 (10)0.0243 (15)
N10.0333 (12)0.0437 (14)0.0500 (14)0.0042 (11)−0.0005 (9)0.0077 (11)
C10.0359 (13)0.0405 (16)0.0479 (15)0.0036 (13)0.0009 (11)−0.0004 (13)
C20.0356 (12)0.0421 (15)0.0368 (14)0.0029 (12)0.0050 (10)−0.0031 (13)
C30.0398 (14)0.0546 (18)0.0436 (15)0.0001 (14)−0.0021 (11)0.0020 (16)
C40.0471 (16)0.080 (2)0.0453 (16)0.0045 (18)−0.0018 (13)0.0133 (19)
C50.0554 (17)0.067 (2)0.059 (2)0.0138 (18)0.0137 (15)0.024 (2)
C60.0552 (17)0.0512 (19)0.070 (2)−0.0060 (17)0.0147 (15)0.0140 (18)
C70.0426 (14)0.0538 (19)0.0523 (17)−0.0035 (14)0.0059 (12)0.0047 (16)
C80.0354 (12)0.0391 (15)0.0470 (16)0.0060 (12)0.0010 (11)0.0046 (13)
C90.084 (2)0.051 (2)0.0476 (17)−0.0102 (19)−0.0115 (16)−0.0008 (16)
C100.082 (2)0.071 (3)0.0513 (19)−0.001 (2)−0.0104 (17)0.010 (2)
C110.0624 (19)0.062 (2)0.067 (2)0.010 (2)0.0116 (16)0.022 (2)
C120.0633 (19)0.0396 (18)0.083 (3)−0.0053 (16)0.0001 (17)0.0068 (18)
C130.0457 (15)0.0427 (17)0.0560 (19)−0.0010 (14)−0.0021 (13)−0.0011 (15)
O1—C11.236 (3)C8—C91.526 (4)
N1—C11.331 (4)C8—H80.9800
N1—C81.456 (4)C9—C101.511 (5)
N1—H1n0.80 (3)C9—H9A0.9700
C1—C21.493 (4)C9—H9B0.9700
C2—C71.379 (4)C10—C111.502 (5)
C2—C31.395 (4)C10—H10A0.9700
C3—C41.379 (5)C10—H10B0.9700
C3—H30.9300C11—C121.512 (5)
C4—C51.365 (5)C11—H11A0.9700
C4—H40.9300C11—H11B0.9700
C5—C61.389 (5)C12—C131.519 (5)
C5—H50.9300C12—H12A0.9700
C6—C71.372 (5)C12—H12B0.9700
C6—H60.9300C13—H13A0.9700
C7—H70.9300C13—H13B0.9700
C8—C131.505 (4)
C1—N1—C8123.1 (2)C10—C9—C8110.6 (3)
C1—N1—H1N116 (3)C10—C9—H9A109.5
C8—N1—H1N120 (2)C8—C9—H9A109.5
O1—C1—N1122.5 (3)C10—C9—H9B109.5
O1—C1—C2119.8 (2)C8—C9—H9B109.5
N1—C1—C2117.7 (2)H9A—C9—H9B108.1
C7—C2—C3118.8 (3)C11—C10—C9112.5 (3)
C7—C2—C1118.2 (2)C11—C10—H10A109.1
C3—C2—C1123.0 (3)C9—C10—H10A109.1
C4—C3—C2119.7 (3)C11—C10—H10B109.1
C4—C3—H3120.2C9—C10—H10B109.1
C2—C3—H3120.2H10A—C10—H10B107.8
C5—C4—C3121.2 (3)C10—C11—C12111.4 (3)
C5—C4—H4119.4C10—C11—H11A109.4
C3—C4—H4119.4C12—C11—H11A109.4
C4—C5—C6119.4 (3)C10—C11—H11B109.4
C4—C5—H5120.3C12—C11—H11B109.4
C6—C5—H5120.3H11A—C11—H11B108.0
C7—C6—C5119.8 (3)C11—C12—C13111.4 (3)
C7—C6—H6120.1C11—C12—H12A109.4
C5—C6—H6120.1C13—C12—H12A109.4
C6—C7—C2121.2 (3)C11—C12—H12B109.4
C6—C7—H7119.4C13—C12—H12B109.4
C2—C7—H7119.4H12A—C12—H12B108.0
N1—C8—C13111.3 (2)C8—C13—C12111.4 (2)
N1—C8—C9110.8 (3)C8—C13—H13A109.3
C13—C8—C9111.1 (3)C12—C13—H13A109.3
N1—C8—H8107.8C8—C13—H13B109.3
C13—C8—H8107.8C12—C13—H13B109.3
C9—C8—H8107.8H13A—C13—H13B108.0
C8—N1—C1—O10.7 (5)C3—C2—C7—C6−0.1 (4)
C8—N1—C1—C2−177.6 (2)C1—C2—C7—C6179.2 (3)
O1—C1—C2—C7−28.3 (4)C1—N1—C8—C13−146.5 (3)
N1—C1—C2—C7150.1 (3)C1—N1—C8—C989.3 (3)
O1—C1—C2—C3150.9 (3)N1—C8—C9—C10179.5 (3)
N1—C1—C2—C3−30.8 (4)C13—C8—C9—C1055.2 (3)
C7—C2—C3—C41.0 (4)C8—C9—C10—C11−54.8 (4)
C1—C2—C3—C4−178.2 (3)C9—C10—C11—C1254.6 (4)
C2—C3—C4—C5−0.6 (5)C10—C11—C12—C13−54.1 (4)
C3—C4—C5—C6−0.7 (5)N1—C8—C13—C12−179.8 (3)
C4—C5—C6—C71.6 (5)C9—C8—C13—C12−55.8 (3)
C5—C6—C7—C2−1.2 (5)C11—C12—C13—C855.2 (4)
Cg1 is the centroid of the C2–C7 ring.
D—H···AD—HH···AD···AD—H···A
N1—H1n···O1i0.80 (3)2.32 (3)3.065 (3)157 (3)
C13—H13a···Cg1ii0.972.823.722 (4)154
C5—H5···Cg1iii0.932.963.729 (4)141
Table 1

Hydrogen-bond geometry (Å, °)

Cg1 is the centroid of the C2–C7 ring.

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1n⋯O1i0.80 (3)2.32 (3)3.065 (3)157 (3)
C13—H13a⋯Cg1ii0.972.823.722 (4)154
C5—H5⋯Cg1iii0.932.963.729 (4)141

Symmetry codes: (i) ; (ii) ; (iii) .

  4 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Anticonvulsant and neurotoxicological properties of 4-amino-N-(2-ethylphenyl)benzamide, a potent ameltolide analogue.

Authors:  O Diouf; M Bourhim; D M Lambert; J H Poupaert; J P Stables; J Vamecq
Journal:  Biomed Pharmacother       Date:  1997       Impact factor: 6.529

3.  Pharmacological effects of enantiomers of 4-amino-N-(alpha-methylbenzyl)benzamide, a chemically novel anticonvulsant.

Authors:  J D Leander; D W Robertson; C R Clark; R R Lawson; R C Rathbun
Journal:  Epilepsia       Date:  1988 Jan-Feb       Impact factor: 5.864

4.  Comparative anticonvulsant activity and neurotoxicity of 4-amino-N-(2,6-dimethylphenyl)benzamide and prototype antiepileptic drugs in mice and rats.

Authors:  C R Clark
Journal:  Epilepsia       Date:  1988 Mar-Apr       Impact factor: 5.864

  4 in total
  2 in total

1.  Methyl 2-(4-chloro-benzamido)-benzoate.

Authors:  Islam Ullah Khan; Onur Sahin; Rashid Javaid; Shahzad Sharif; Orhan Büyükgüngör
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-11-27

2.  4-Bromo-N-cyclo-hexyl-benzene-sulfonamide.

Authors:  Peter John; Faiza Anwar; Islam Ullah Khan; Shahzad Sharif; Edward R T Tiekink
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-07-10
  2 in total

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