Literature DB >> 21587910

1-Acetyl-3-[2-(2,3,5,6-tetra-fluoro-phen-yl)hydrazin-1-yl-idene]indolin-2-one.

Humayun Pervez, Muhammad Yaqub, Maqbool Ahmad, M Nawaz Tahir, Robina Akhtar.   

Abstract

In the title compound, C(16)H(9)F(4)N(3)O(2), the dihedral angle between the aromatic ring systems is 4.10 (14)° and a bifurcated intra-molecular N-H⋯(O,F) hydrogen bond generates an S(6) ring for the O-atom acceptor and an S(5) ring for the F-atom acceptor. A short C-H⋯O conact also occurs. In the crystal, mol-ecules are linked by C-H⋯O inter-actions.

Entities:  

Year:  2010        PMID: 21587910      PMCID: PMC3006959          DOI: 10.1107/S1600536810022580

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background on related isatin derivatives, see: Pervez et al. (2007 ▶, 2008 ▶, 2010a ▶). For related structures, see: Abad et al. (2006 ▶); Pervez et al. (2010b ▶). For graph-set notation, see: Bernstein et al. (1995 ▶).

Experimental

Crystal data

C16H9F4N3O2 M = 351.26 Monoclinic, a = 9.8993 (19) Å b = 4.7740 (6) Å c = 16.066 (3) Å β = 104.807 (8)° V = 734.0 (2) Å3 Z = 2 Mo Kα radiation μ = 0.14 mm−1 T = 296 K 0.32 × 0.24 × 0.22 mm

Data collection

Bruker Kappa APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2005 ▶) T min = 0.942, T max = 0.952 6095 measured reflections 1462 independent reflections 749 reflections with I > 2σ(I) R int = 0.087

Refinement

R[F 2 > 2σ(F 2)] = 0.046 wR(F 2) = 0.080 S = 0.96 1462 reflections 227 parameters 1 restraint H-atom parameters constrained Δρmax = 0.14 e Å−3 Δρmin = −0.18 e Å−3 Data collection: APEX2 (Bruker, 2007 ▶); cell refinement: SAINT (Bruker, 2007 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶) and PLATON (Spek, 2009 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶) and PLATON. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810022580/hb5498sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810022580/hb5498Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C16H9F4N3O2F(000) = 356
Mr = 351.26Dx = 1.589 Mg m3
Monoclinic, P21Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ybCell parameters from 749 reflections
a = 9.8993 (19) Åθ = 2.6–25.3°
b = 4.7740 (6) ŵ = 0.14 mm1
c = 16.066 (3) ÅT = 296 K
β = 104.807 (8)°Prism, yellow
V = 734.0 (2) Å30.32 × 0.24 × 0.22 mm
Z = 2
Bruker Kappa APEXII CCD diffractometer1462 independent reflections
Radiation source: fine-focus sealed tube749 reflections with I > 2σ(I)
graphiteRint = 0.087
Detector resolution: 8.10 pixels mm-1θmax = 25.3°, θmin = 2.1°
ω scansh = −11→11
Absorption correction: multi-scan (SADABS; Bruker, 2005)k = −5→5
Tmin = 0.942, Tmax = 0.952l = −19→19
6095 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.046Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.080H-atom parameters constrained
S = 0.96w = 1/[σ2(Fo2) + (0.0218P)2] where P = (Fo2 + 2Fc2)/3
1462 reflections(Δ/σ)max < 0.001
227 parametersΔρmax = 0.14 e Å3
1 restraintΔρmin = −0.18 e Å3
Geometry. Bond distances, angles etc. have been calculated using the rounded fractional coordinates. All su's are estimated from the variances of the (full) variance-covariance matrix. The cell e.s.d.'s are taken into account in the estimation of distances, angles and torsion angles
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
F10.3005 (3)−0.4142 (6)0.06872 (17)0.0638 (12)
F20.4748 (3)−0.8205 (7)0.0458 (2)0.0791 (16)
F30.7604 (3)−0.6503 (7)0.3236 (2)0.0843 (14)
F40.5877 (3)−0.2576 (8)0.34942 (19)0.0820 (14)
O1−0.1264 (4)0.8071 (9)0.2007 (3)0.0780 (17)
O20.1041 (3)0.1514 (8)0.1326 (2)0.0613 (14)
N10.3432 (4)0.0297 (9)0.2843 (3)0.0520 (17)
N20.3382 (4)−0.1238 (9)0.2140 (3)0.0492 (17)
N30.0446 (4)0.4800 (9)0.2270 (3)0.0472 (17)
C10.2424 (5)0.2126 (11)0.2794 (3)0.045 (2)
C20.2254 (6)0.3936 (11)0.3472 (3)0.048 (2)
C30.3062 (6)0.4269 (12)0.4321 (4)0.067 (3)
C40.2608 (7)0.6204 (15)0.4832 (4)0.085 (3)
C50.1400 (8)0.7727 (13)0.4520 (4)0.082 (3)
C60.0581 (6)0.7417 (12)0.3682 (4)0.064 (3)
C70.1054 (5)0.5532 (10)0.3168 (3)0.046 (2)
C80.1251 (5)0.2667 (11)0.2034 (3)0.047 (2)
C9−0.0694 (6)0.6214 (14)0.1721 (4)0.057 (2)
C10−0.1145 (5)0.5317 (13)0.0791 (3)0.078 (3)
C110.4358 (5)−0.3222 (11)0.2091 (3)0.0415 (19)
C120.4162 (5)−0.4726 (11)0.1331 (3)0.046 (2)
C130.5063 (6)−0.6775 (12)0.1212 (4)0.055 (2)
C140.6244 (6)−0.7476 (12)0.1850 (4)0.058 (3)
C150.6455 (6)−0.5977 (13)0.2589 (4)0.055 (2)
C160.5565 (6)−0.3921 (11)0.2732 (3)0.052 (2)
H20.26986−0.096590.169450.0589*
H30.387100.322860.453290.0808*
H40.312790.648310.539640.1016*
H50.112380.900270.488230.0984*
H6−0.024100.842510.347810.0768*
H10A−0.191070.646430.048920.1164*
H10B−0.143410.339170.075890.1164*
H10C−0.037720.552300.053200.1164*
H140.68534−0.888330.177720.0692*
U11U22U33U12U13U23
F10.059 (2)0.066 (2)0.058 (2)0.0084 (17)−0.0006 (16)0.0018 (17)
F20.096 (3)0.066 (2)0.078 (3)0.010 (2)0.027 (2)−0.013 (2)
F30.062 (2)0.101 (3)0.083 (2)0.018 (2)0.006 (2)0.024 (2)
F40.077 (2)0.098 (3)0.060 (2)0.013 (2)−0.0025 (19)−0.010 (2)
O10.075 (3)0.076 (3)0.083 (3)0.029 (3)0.020 (2)0.002 (2)
O20.061 (2)0.070 (3)0.052 (2)0.010 (2)0.013 (2)−0.010 (2)
N10.062 (3)0.047 (3)0.048 (3)−0.006 (3)0.016 (2)−0.002 (3)
N20.042 (3)0.055 (3)0.048 (3)0.008 (2)0.007 (2)−0.001 (3)
N30.048 (3)0.039 (3)0.055 (3)0.008 (2)0.014 (3)0.006 (2)
C10.048 (4)0.038 (4)0.051 (4)0.003 (3)0.015 (3)0.008 (3)
C20.058 (4)0.043 (4)0.045 (4)−0.004 (3)0.018 (3)0.002 (3)
C30.075 (4)0.069 (5)0.055 (4)0.010 (4)0.011 (4)−0.004 (4)
C40.105 (6)0.083 (6)0.062 (5)0.003 (5)0.014 (4)−0.015 (4)
C50.112 (6)0.068 (5)0.073 (5)0.001 (5)0.035 (4)−0.020 (4)
C60.067 (4)0.056 (4)0.074 (5)0.007 (3)0.027 (4)−0.003 (4)
C70.053 (4)0.037 (4)0.050 (4)−0.004 (3)0.016 (3)−0.001 (3)
C80.049 (4)0.042 (4)0.051 (4)−0.003 (3)0.017 (3)0.006 (3)
C90.051 (4)0.057 (4)0.066 (4)0.005 (3)0.022 (3)0.008 (3)
C100.072 (4)0.095 (5)0.057 (4)0.019 (4)0.000 (3)0.000 (4)
C110.040 (3)0.037 (3)0.051 (4)−0.001 (3)0.018 (3)0.010 (3)
C120.046 (4)0.040 (4)0.052 (4)0.006 (3)0.013 (3)0.006 (3)
C130.068 (4)0.045 (4)0.055 (4)0.001 (3)0.020 (4)−0.002 (3)
C140.057 (4)0.044 (4)0.078 (5)0.008 (3)0.028 (4)0.012 (4)
C150.044 (4)0.057 (4)0.064 (4)0.009 (3)0.012 (3)0.021 (4)
C160.051 (4)0.056 (4)0.048 (4)−0.009 (3)0.013 (3)−0.006 (3)
F1—C121.362 (6)C4—C51.380 (10)
F2—C131.356 (7)C5—C61.391 (9)
F3—C151.354 (7)C6—C71.382 (8)
F4—C161.347 (6)C9—C101.508 (8)
O1—C91.203 (8)C11—C161.404 (7)
O2—C81.233 (6)C11—C121.387 (7)
N1—N21.337 (6)C12—C131.370 (8)
N1—C11.313 (7)C13—C141.385 (9)
N2—C111.370 (7)C14—C151.356 (9)
N3—C71.457 (7)C15—C161.377 (8)
N3—C81.404 (7)C3—H30.9300
N3—C91.414 (8)C4—H40.9300
N2—H20.8600C5—H50.9300
C1—C81.477 (7)C6—H60.9300
C1—C21.434 (7)C10—H10A0.9600
C2—C71.391 (8)C10—H10B0.9600
C2—C31.403 (8)C10—H10C0.9600
C3—C41.385 (9)C14—H140.9300
N2—N1—C1116.8 (4)F1—C12—C13119.4 (5)
N1—N2—C11123.6 (4)C11—C12—C13122.9 (5)
C7—N3—C8108.8 (4)F1—C12—C11117.7 (4)
C7—N3—C9124.4 (4)C12—C13—C14121.7 (5)
C8—N3—C9126.6 (5)F2—C13—C12118.4 (5)
N1—N2—H2118.00F2—C13—C14119.9 (5)
C11—N2—H2118.00C13—C14—C15115.6 (6)
N1—C1—C2126.2 (5)F3—C15—C16116.9 (5)
N1—C1—C8126.2 (5)C14—C15—C16124.1 (6)
C2—C1—C8107.6 (4)F3—C15—C14119.1 (5)
C1—C2—C3131.2 (5)C11—C16—C15120.5 (5)
C3—C2—C7120.2 (5)F4—C16—C11120.5 (5)
C1—C2—C7108.6 (4)F4—C16—C15118.9 (5)
C2—C3—C4117.5 (6)C2—C3—H3121.00
C3—C4—C5121.2 (6)C4—C3—H3121.00
C4—C5—C6122.2 (6)C3—C4—H4119.00
C5—C6—C7116.4 (6)C5—C4—H4119.00
C2—C7—C6122.5 (5)C4—C5—H5119.00
N3—C7—C2108.4 (4)C6—C5—H5119.00
N3—C7—C6129.1 (5)C5—C6—H6122.00
N3—C8—C1106.5 (4)C7—C6—H6122.00
O2—C8—N3126.9 (5)C9—C10—H10A110.00
O2—C8—C1126.6 (5)C9—C10—H10B109.00
O1—C9—N3119.4 (6)C9—C10—H10C109.00
O1—C9—C10122.6 (6)H10A—C10—H10B109.00
N3—C9—C10118.0 (5)H10A—C10—H10C109.00
N2—C11—C12117.8 (4)H10B—C10—H10C109.00
C12—C11—C16115.1 (5)C13—C14—H14122.00
N2—C11—C16127.1 (5)C15—C14—H14122.00
C1—N1—N2—C11179.8 (5)C1—C2—C7—C6177.8 (5)
N2—N1—C1—C2178.5 (5)C3—C2—C7—N3178.8 (5)
N2—N1—C1—C8−0.7 (8)C3—C2—C7—C6−2.1 (8)
N1—N2—C11—C12178.2 (5)C2—C3—C4—C50.6 (10)
N1—N2—C11—C16−2.2 (8)C3—C4—C5—C6−0.3 (11)
C8—N3—C7—C22.2 (6)C4—C5—C6—C7−1.2 (10)
C8—N3—C7—C6−176.7 (5)C5—C6—C7—N3−178.8 (5)
C9—N3—C7—C2−172.7 (5)C5—C6—C7—C22.4 (8)
C9—N3—C7—C68.4 (8)N2—C11—C12—F1−0.5 (7)
C7—N3—C8—O2179.4 (5)N2—C11—C12—C13−179.4 (5)
C7—N3—C8—C1−2.2 (5)C16—C11—C12—F1179.8 (4)
C9—N3—C8—O2−5.9 (9)C16—C11—C12—C130.9 (8)
C9—N3—C8—C1172.6 (5)N2—C11—C16—F4−0.6 (8)
C7—N3—C9—O1−3.7 (9)N2—C11—C16—C15180.0 (5)
C7—N3—C9—C10176.2 (5)C12—C11—C16—F4179.1 (5)
C8—N3—C9—O1−177.7 (5)C12—C11—C16—C15−0.4 (8)
C8—N3—C9—C102.3 (8)F1—C12—C13—F2−1.6 (8)
N1—C1—C2—C30.5 (10)F1—C12—C13—C14−179.1 (5)
N1—C1—C2—C7−179.4 (5)C11—C12—C13—F2177.3 (5)
C8—C1—C2—C3179.8 (6)C11—C12—C13—C14−0.2 (9)
C8—C1—C2—C70.0 (6)F2—C13—C14—C15−178.4 (5)
N1—C1—C8—O2−0.8 (9)C12—C13—C14—C15−0.9 (9)
N1—C1—C8—N3−179.3 (5)C13—C14—C15—F3−178.6 (5)
C2—C1—C8—O2179.9 (5)C13—C14—C15—C161.5 (9)
C2—C1—C8—N31.4 (6)F3—C15—C16—F4−0.2 (8)
C1—C2—C3—C4−179.3 (6)F3—C15—C16—C11179.3 (5)
C7—C2—C3—C40.6 (9)C14—C15—C16—F4179.7 (5)
C1—C2—C7—N3−1.3 (6)C14—C15—C16—C11−0.9 (9)
D—H···AD—HH···AD···AD—H···A
N2—H2···O20.861.992.694 (5)139
N2—H2···F10.862.292.658 (5)106
C6—H6···O10.932.332.857 (8)116
C14—H14···O1i0.932.323.217 (7)163
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N2—H2⋯O20.861.992.694 (5)139
N2—H2⋯F10.862.292.658 (5)106
C6—H6⋯O10.932.332.857 (8)116
C14—H14⋯O1i0.932.323.217 (7)163

Symmetry code: (i) .

  5 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Synthesis of some N4-substituted isatin-3-thiosemicarbazones.

Authors:  H Pervez; M S Iqbal; M Y Tahir; M I Choudhary; K M Khan
Journal:  Nat Prod Res       Date:  2007-11       Impact factor: 2.861

3.  4-(2-Fluoro-phen-yl)-1-(2-oxoindolin-3-yl-idene)thio-semicarbazide.

Authors:  Humayun Pervez; Muhammad Yaqub; Muhammad Ramzan; Mohammad S Iqbal; M Nawaz Tahir
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-04-02

4.  In vitro cytotoxic, antibacterial, antifungal and urease inhibitory activities of some N4- substituted isatin-3-thiosemicarbazones.

Authors:  Humayun Pervez; Mohammad S Iqbal; Muhammad Younas Tahir; Faiz-ul-Hassan Nasim; Muhammad Iqbal Choudhary; Khalid Mohammed Khan
Journal:  J Enzyme Inhib Med Chem       Date:  2008-12       Impact factor: 5.051

5.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  5 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.