Literature DB >> 21587903

5-Meth-oxy-1-(3,4,5-trimethoxy-phen-yl)-1H-indole.

Thomas Blake Monroe1, Casey Rimland, Yasamin Moazami, Daniel S Jones, Craig A Ogle.   

Abstract

The title compound, C(18)H(19)NO(4), was prepared as an indole derivative with possible anti-mitotic properties. The planes of the indole and trimethoxy-phenyl rings make a dihedral angle of 45.35 (5)° with one another. In the crystal, mol-ecules related by a twofold screw axis exhibit arene C-H⋯arene-π inter-actions which are 3.035 (1) Å in length.

Entities:  

Year:  2010        PMID: 21587903      PMCID: PMC3007039          DOI: 10.1107/S1600536810018568

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For a related structure, see: Suthar et al. (2005 ▶). For pharmaceutical applications of indoles, see: Fuwa & Sasaki (2009 ▶); Li & Martins (2003 ▶).

Experimental

Crystal data

C18H19NO4 M = 313.34 Monoclinic, a = 19.0036 (16) Å b = 7.3179 (14) Å c = 23.672 (4) Å β = 96.802 (10)° V = 3268.8 (9) Å3 Z = 8 Cu Kα radiation μ = 0.74 mm−1 T = 295 K 0.32 × 0.27 × 0.26 mm

Data collection

Enraf–Nonius CAD-4 diffractometer 6084 measured reflections 2951 independent reflections 2074 reflections with I > 2σ(I) R int = 0.026 3 standard reflections every 190 reflections intensity decay: 4%

Refinement

R[F 2 > 2σ(F 2)] = 0.037 wR(F 2) = 0.110 S = 1.00 2951 reflections 209 parameters H-atom parameters constrained Δρmax = 0.16 e Å−3 Δρmin = −0.16 e Å−3 Data collection: CAD-4 EXPRESS (Enraf–Nonius, 1994 ▶); cell refinement: CAD-4 EXPRESS; data reduction: XCAD4 (Harms & Wocadlo, 1995 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶), Mercury (Macrae et al., 2006 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810018568/fl2291sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810018568/fl2291Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C18H19NO4F(000) = 1328
Mr = 313.34Dx = 1.273 Mg m3
Monoclinic, C2/cCu Kα radiation, λ = 1.54184 Å
Hall symbol: -C 2ycCell parameters from 24 reflections
a = 19.0036 (16) Åθ = 6.4–20.8°
b = 7.3179 (14) ŵ = 0.74 mm1
c = 23.672 (4) ÅT = 295 K
β = 96.802 (10)°Prism, colorless
V = 3268.8 (9) Å30.32 × 0.27 × 0.26 mm
Z = 8
Enraf–Nonius CAD-4 diffractometerθmax = 67.4°, θmin = 3.8°
non–profiled ω/2θ scansh = −22→22
6084 measured reflectionsk = −8→0
2951 independent reflectionsl = −28→28
2074 reflections with I > 2σ(I)3 standard reflections every 190 reflections
Rint = 0.026 intensity decay: 4%
Refinement on F2H-atom parameters constrained
Least-squares matrix: fullw = 1/[σ2(Fo2) + (0.0613P)2 + 0.605P] where P = (Fo2 + 2Fc2)/3
R[F2 > 2σ(F2)] = 0.037(Δ/σ)max < 0.001
wR(F2) = 0.110Δρmax = 0.16 e Å3
S = 1.00Δρmin = −0.16 e Å3
2951 reflectionsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
209 parametersExtinction coefficient: 0.00188 (13)
0 restraints
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
xyzUiso*/Ueq
O140.15356 (6)0.12928 (15)0.49143 (5)0.0511 (3)
O130.07247 (7)0.29172 (17)0.40657 (5)0.0575 (3)
O50.40130 (7)0.77324 (19)0.74372 (5)0.0647 (4)
N0.14855 (7)0.67340 (19)0.60827 (5)0.0451 (3)
O120.02905 (7)0.64188 (17)0.41594 (5)0.0562 (4)
C110.08846 (8)0.6630 (2)0.51210 (7)0.0459 (4)
H150.07410.78340.51590.055*
C150.15105 (8)0.3970 (2)0.55189 (6)0.0429 (4)
H110.17730.33910.58240.051*
C140.13334 (8)0.3050 (2)0.50087 (7)0.0414 (4)
C80.21611 (9)0.6831 (2)0.63793 (6)0.0428 (4)
C70.27934 (9)0.6005 (2)0.62755 (7)0.0488 (4)
H40.28130.52350.59650.059*
C130.09214 (8)0.3894 (2)0.45562 (6)0.0430 (4)
C120.06941 (8)0.5691 (2)0.46185 (7)0.0435 (4)
C100.12910 (8)0.5758 (2)0.55666 (6)0.0427 (4)
C60.33859 (10)0.6368 (3)0.66472 (7)0.0519 (4)
H30.38130.58230.65890.062*
C50.33640 (10)0.7540 (2)0.71127 (7)0.0496 (4)
C30.14176 (10)0.8679 (2)0.68041 (7)0.0539 (5)
H90.1240.950.70520.065*
C180.20053 (9)0.0443 (2)0.53514 (7)0.0532 (4)
H18A0.2109−0.07770.52370.08*
H18B0.17860.040.56960.08*
H18C0.24370.11340.54150.08*
C40.27495 (10)0.8393 (2)0.72137 (7)0.0520 (4)
H70.2740.91790.75210.062*
C20.10450 (10)0.7872 (2)0.63464 (7)0.0512 (4)
H80.05660.80570.62280.061*
C90.21305 (9)0.8044 (2)0.68373 (7)0.0466 (4)
C160.00926 (10)0.8294 (3)0.41920 (8)0.0597 (5)
H16A−0.01870.86440.38440.09*
H16B0.05110.90380.42480.09*
H16C−0.01790.84610.45050.09*
C170.10615 (13)0.3480 (3)0.35877 (8)0.0751 (6)
H17A0.08950.27390.32650.113*
H17B0.15650.33420.36730.113*
H17C0.09510.47380.35040.113*
C190.40555 (13)0.8959 (3)0.78968 (9)0.0857 (7)
H1A0.45310.89730.80860.129*
H1B0.37360.8580.81590.129*
H1C0.39291.01620.77590.129*
U11U22U33U12U13U23
O140.0641 (7)0.0342 (6)0.0528 (7)0.0029 (5)−0.0026 (6)−0.0024 (5)
O130.0760 (8)0.0458 (7)0.0466 (6)−0.0098 (6)−0.0091 (6)−0.0038 (5)
O50.0659 (8)0.0628 (9)0.0605 (8)−0.0043 (7)−0.0125 (6)−0.0102 (7)
N0.0516 (8)0.0402 (8)0.0423 (7)0.0020 (6)0.0006 (6)−0.0044 (6)
O120.0620 (8)0.0452 (7)0.0560 (7)0.0041 (6)−0.0155 (6)0.0022 (6)
C110.0497 (9)0.0362 (9)0.0503 (9)0.0013 (7)0.0003 (7)−0.0013 (7)
C150.0465 (9)0.0387 (9)0.0420 (8)−0.0023 (7)−0.0006 (7)0.0026 (7)
C140.0443 (8)0.0322 (8)0.0475 (8)−0.0049 (7)0.0050 (7)0.0006 (7)
C80.0522 (9)0.0359 (9)0.0394 (8)−0.0001 (7)0.0009 (7)−0.0006 (7)
C70.0568 (10)0.0445 (10)0.0446 (8)0.0004 (8)0.0043 (7)−0.0065 (7)
C130.0468 (9)0.0386 (9)0.0421 (8)−0.0093 (7)−0.0016 (7)−0.0018 (7)
C120.0409 (8)0.0398 (9)0.0480 (9)−0.0034 (7)−0.0027 (7)0.0044 (7)
C100.0458 (8)0.0383 (9)0.0431 (8)−0.0040 (7)0.0021 (7)−0.0025 (7)
C60.0531 (10)0.0494 (10)0.0528 (10)0.0010 (8)0.0044 (8)−0.0033 (8)
C50.0589 (10)0.0424 (10)0.0452 (9)−0.0040 (8)−0.0040 (8)0.0020 (7)
C30.0648 (11)0.0459 (10)0.0505 (9)0.0095 (8)0.0050 (8)−0.0088 (8)
C180.0551 (10)0.0418 (10)0.0619 (10)0.0023 (8)0.0034 (8)0.0063 (8)
C40.0704 (12)0.0417 (10)0.0423 (8)−0.0013 (9)−0.0001 (8)−0.0072 (7)
C20.0560 (10)0.0448 (9)0.0523 (9)0.0092 (8)0.0044 (8)−0.0017 (8)
C90.0608 (10)0.0371 (9)0.0409 (8)0.0014 (8)0.0022 (7)−0.0016 (7)
C160.0653 (12)0.0456 (11)0.0654 (12)0.0073 (9)−0.0046 (9)0.0097 (9)
C170.1107 (18)0.0663 (14)0.0487 (10)0.0058 (13)0.0109 (11)−0.0032 (10)
C190.0995 (17)0.0828 (17)0.0663 (13)0.0018 (14)−0.0254 (12)−0.0217 (12)
O14—C141.368 (2)C13—C121.397 (2)
O14—C181.427 (2)C6—C51.401 (2)
O13—C131.3769 (18)C6—H30.93
O13—C171.425 (2)C5—C41.370 (2)
O5—C51.381 (2)C3—C21.357 (2)
O5—C191.405 (2)C3—C91.426 (2)
N—C21.381 (2)C3—H90.93
N—C81.390 (2)C18—H18A0.96
N—C101.4255 (19)C18—H18B0.96
O12—C121.3622 (18)C18—H18C0.96
O12—C161.427 (2)C4—C91.412 (2)
C11—C121.384 (2)C4—H70.93
C11—C101.387 (2)C2—H80.93
C11—H150.93C16—H16A0.96
C15—C101.382 (2)C16—H16B0.96
C15—C141.389 (2)C16—H16C0.96
C15—H110.93C17—H17A0.96
C14—C131.394 (2)C17—H17B0.96
C8—C71.393 (2)C17—H17C0.96
C8—C91.408 (2)C19—H1A0.96
C7—C61.371 (2)C19—H1B0.96
C7—H40.93C19—H1C0.96
C14—O14—C18117.06 (12)C2—C3—C9107.72 (15)
C13—O13—C17114.63 (14)C2—C3—H9126.1
C5—O5—C19117.49 (16)C9—C3—H9126.1
C2—N—C8108.29 (13)O14—C18—H18A109.5
C2—N—C10125.44 (14)O14—C18—H18B109.5
C8—N—C10126.06 (14)H18A—C18—H18B109.5
C12—O12—C16117.38 (13)O14—C18—H18C109.5
C12—C11—C10119.38 (15)H18A—C18—H18C109.5
C12—C11—H15120.3H18B—C18—H18C109.5
C10—C11—H15120.3C5—C4—C9118.11 (15)
C10—C15—C14119.05 (15)C5—C4—H7120.9
C10—C15—H11120.5C9—C4—H7120.9
C14—C15—H11120.5C3—C2—N109.65 (16)
O14—C14—C15123.64 (14)C3—C2—H8125.2
O14—C14—C13115.72 (14)N—C2—H8125.2
C15—C14—C13120.63 (15)C8—C9—C4119.51 (16)
N—C8—C7130.78 (15)C8—C9—C3106.80 (15)
N—C8—C9107.54 (14)C4—C9—C3133.69 (16)
C7—C8—C9121.66 (15)O12—C16—H16A109.5
C6—C7—C8117.58 (16)O12—C16—H16B109.5
C6—C7—H4121.2H16A—C16—H16B109.5
C8—C7—H4121.2O12—C16—H16C109.5
O13—C13—C14119.30 (15)H16A—C16—H16C109.5
O13—C13—C12121.42 (14)H16B—C16—H16C109.5
C14—C13—C12119.23 (14)O13—C17—H17A109.5
O12—C12—C11123.83 (15)O13—C17—H17B109.5
O12—C12—C13115.82 (14)H17A—C17—H17B109.5
C11—C12—C13120.35 (15)O13—C17—H17C109.5
C15—C10—C11121.32 (15)H17A—C17—H17C109.5
C15—C10—N119.60 (14)H17B—C17—H17C109.5
C11—C10—N119.08 (15)O5—C19—H1A109.5
C7—C6—C5121.68 (17)O5—C19—H1B109.5
C7—C6—H3119.2H1A—C19—H1B109.5
C5—C6—H3119.2O5—C19—H1C109.5
C4—C5—O5125.46 (16)H1A—C19—H1C109.5
C4—C5—C6121.44 (16)H1B—C19—H1C109.5
O5—C5—C6113.10 (16)
H··· ring-centroid distanceAngle between the H···ring-centroid line and the aromatic ring normal
3.035 (1) Å5.6 (3) °
  2 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Synthesis of 2-substituted indoles and indolines via Suzuki-Miyaura coupling/5-endo-trig cyclization strategies.

Authors:  Haruhiko Fuwa; Makoto Sasaki
Journal:  J Org Chem       Date:  2009-01-02       Impact factor: 4.354

  2 in total

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