Literature DB >> 21587894

Cholest-5-en-7-one.

Mohd Shaheen Khan, Othman Sulaiman, Rokiah Hashim, Ching Kheng Quah, Hoong-Kun Fun.   

Abstract

In the deca-hydro-phenanthrenone ring system of the title compound, C(27)H(44)O, the two cyclo-hexane rings adopt chair conformations, whereas the cyclo-hexene ring adopts an envelope conformation. The cyclo-pentane ring is twisted. In the crystal structure, mol-ecules are stacked along the a axis, but no significant inter-molecular inter-actions are observed.

Entities:  

Year:  2010        PMID: 21587894      PMCID: PMC3007018          DOI: 10.1107/S1600536810021598

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background to and the biological activity of steroid derivatives, see: Drach et al. (2000 ▶); Grover et al. (2007 ▶); Khan & Yusuf (2009 ▶). For the synthesis of title compound, see: Dauben & Takemura (1953 ▶); Ruiz (1958 ▶). For the stability of the temperature controller used for the data collection, see: Cosier & Glazer (1986 ▶). For details of ring conformations, see: Cremer & Pople (1975 ▶). For bond-length data, see: Allen et al. (1987 ▶).

Experimental

Crystal data

C27H44O M = 384.62 Monoclinic, a = 6.3468 (13) Å b = 11.517 (3) Å c = 15.678 (3) Å β = 91.470 (5)° V = 1145.6 (4) Å3 Z = 2 Mo Kα radiation μ = 0.07 mm−1 T = 100 K 0.25 × 0.18 × 0.03 mm

Data collection

Bruker SMART APEXII DUO CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2009 ▶) T min = 0.984, T max = 0.998 13066 measured reflections 3512 independent reflections 2776 reflections with I > 2σ(I) R int = 0.058

Refinement

R[F 2 > 2σ(F 2)] = 0.051 wR(F 2) = 0.132 S = 1.04 3512 reflections 252 parameters 1 restraint H-atom parameters constrained Δρmax = 0.51 e Å−3 Δρmin = −0.44 e Å−3 Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810021598/is2558sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810021598/is2558Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C27H44OF(000) = 428
Mr = 384.62Dx = 1.115 Mg m3
Monoclinic, P21Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ybCell parameters from 2115 reflections
a = 6.3468 (13) Åθ = 2.2–27.8°
b = 11.517 (3) ŵ = 0.07 mm1
c = 15.678 (3) ÅT = 100 K
β = 91.470 (5)°Plate, colourless
V = 1145.6 (4) Å30.25 × 0.18 × 0.03 mm
Z = 2
Bruker SMART APEXII DUO CCD area-detector diffractometer3512 independent reflections
Radiation source: fine-focus sealed tube2776 reflections with I > 2σ(I)
graphiteRint = 0.058
φ and ω scansθmax = 30.2°, θmin = 1.3°
Absorption correction: multi-scan (SADABS; Bruker, 2009)h = −8→8
Tmin = 0.984, Tmax = 0.998k = −16→16
13066 measured reflectionsl = −21→22
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.051Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.132H-atom parameters constrained
S = 1.04w = 1/[σ2(Fo2) + (0.0534P)2 + 0.3776P] where P = (Fo2 + 2Fc2)/3
3512 reflections(Δ/σ)max = 0.001
252 parametersΔρmax = 0.51 e Å3
1 restraintΔρmin = −0.43 e Å3
Experimental. The crystal was placed in the cold stream of an Oxford Cyrosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K.
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O1−0.4772 (3)0.33629 (19)1.00165 (15)0.0316 (5)
C1−0.0378 (3)0.1067 (2)0.87139 (16)0.0161 (5)
C20.1540 (4)0.0845 (2)0.92977 (16)0.0201 (5)
H2A0.24070.15390.93230.024*
H2B0.23760.02240.90610.024*
C30.0906 (4)0.0514 (2)1.02042 (17)0.0225 (5)
H3A0.21710.04261.05590.027*
H3B0.0194−0.02321.01850.027*
C4−0.0544 (4)0.1409 (2)1.06179 (16)0.0185 (5)
H4A0.02780.21261.06780.022*
C5−0.1179 (4)0.1052 (2)1.15351 (16)0.0196 (5)
C60.0827 (4)0.1099 (3)1.21199 (18)0.0283 (6)
H6A0.17570.04701.19630.034*
H6B0.15580.18231.20160.034*
C70.0402 (5)0.1007 (3)1.30742 (18)0.0344 (7)
H7A−0.02240.02591.31960.041*
H7B0.17190.10671.33990.041*
C8−0.1088 (5)0.1976 (3)1.33392 (19)0.0382 (7)
H8A−0.13750.19061.39420.046*
H8B−0.04320.27251.32460.046*
C9−0.3134 (5)0.1899 (3)1.28214 (18)0.0292 (6)
H9A−0.38670.11931.29750.035*
H9B−0.40240.25511.29650.035*
C10−0.2795 (4)0.1900 (2)1.18697 (17)0.0210 (5)
C11−0.3927 (4)0.2611 (2)1.13562 (17)0.0225 (5)
H11A−0.48620.31191.16100.027*
C12−0.3792 (4)0.2643 (2)1.04303 (17)0.0200 (5)
C13−0.2455 (4)0.1700 (2)1.00234 (16)0.0171 (5)
H13A−0.33210.10000.99580.021*
C14−0.1667 (4)0.2043 (2)0.91427 (16)0.0163 (5)
H14A−0.06870.26900.92390.020*
C15−0.3230 (4)0.2445 (2)0.84445 (16)0.0222 (5)
H15A−0.36370.32470.85310.027*
H15B−0.44850.19640.84320.027*
C16−0.1995 (4)0.2306 (2)0.76141 (17)0.0219 (5)
H16A−0.16740.30620.73770.026*
H16B−0.28260.18740.71950.026*
C170.0071 (4)0.1643 (2)0.78416 (16)0.0176 (5)
H17A0.11780.22240.79410.021*
C180.0752 (4)0.0879 (2)0.70931 (16)0.0196 (5)
H18A−0.03750.03100.69920.024*
C190.0939 (4)0.1585 (3)0.62657 (16)0.0233 (5)
H19A0.12680.10530.58080.028*
H19B−0.04270.19240.61280.028*
C200.2579 (4)0.2556 (2)0.62794 (17)0.0221 (5)
H20A0.23180.30720.67540.027*
H20B0.39710.22230.63660.027*
C210.2520 (4)0.3250 (3)0.54552 (19)0.0320 (7)
H21A0.11140.35670.53710.038*
H21B0.27720.27250.49850.038*
C220.4102 (5)0.4243 (3)0.5418 (2)0.0320 (7)
H22A0.40350.46670.59580.038*
C230.3563 (6)0.5096 (4)0.4707 (3)0.0520 (7)
H23A0.46240.56890.46930.078*
H23B0.22190.54450.48100.078*
H23C0.35040.46940.41710.078*
C240.6329 (5)0.3824 (4)0.5333 (3)0.0520 (7)
H24A0.72710.44760.53500.078*
H24B0.64590.34220.48010.078*
H24C0.66800.33070.57960.078*
C25−0.1682 (4)−0.0043 (2)0.85817 (18)0.0228 (5)
H25A−0.0796−0.06490.83710.034*
H25B−0.28090.01040.81760.034*
H25C−0.2257−0.02780.91150.034*
C26−0.2164 (5)−0.0170 (2)1.15541 (19)0.0270 (6)
H26A−0.3263−0.02241.11240.040*
H26B−0.2743−0.03071.21050.040*
H26C−0.1099−0.07391.14460.040*
C270.2764 (4)0.0194 (2)0.72725 (18)0.0234 (5)
H27A0.3139−0.02250.67690.035*
H27B0.2542−0.03430.77300.035*
H27C0.38820.07190.74320.035*
U11U22U33U12U13U23
O10.0336 (11)0.0294 (11)0.0322 (11)0.0148 (9)0.0057 (8)0.0012 (9)
C10.0144 (10)0.0140 (10)0.0201 (12)0.0000 (9)0.0035 (8)0.0013 (10)
C20.0156 (10)0.0227 (12)0.0222 (12)0.0014 (9)0.0048 (9)0.0033 (11)
C30.0207 (12)0.0259 (13)0.0213 (13)0.0073 (10)0.0054 (10)0.0053 (11)
C40.0184 (11)0.0179 (11)0.0192 (12)0.0001 (9)0.0030 (9)0.0024 (10)
C50.0222 (11)0.0170 (11)0.0199 (12)0.0015 (10)0.0064 (9)0.0022 (10)
C60.0264 (13)0.0351 (15)0.0235 (13)0.0030 (12)0.0012 (10)0.0034 (13)
C70.0378 (16)0.0427 (18)0.0226 (14)0.0050 (15)0.0003 (12)0.0029 (14)
C80.0532 (19)0.0413 (18)0.0203 (14)0.0078 (16)0.0044 (13)−0.0032 (14)
C90.0379 (15)0.0256 (13)0.0245 (14)0.0041 (12)0.0090 (11)0.0016 (12)
C100.0232 (12)0.0159 (11)0.0243 (13)−0.0019 (10)0.0065 (10)−0.0012 (10)
C110.0229 (12)0.0188 (12)0.0263 (13)0.0007 (10)0.0079 (10)−0.0013 (11)
C120.0179 (11)0.0167 (11)0.0255 (13)−0.0007 (9)0.0046 (9)−0.0007 (10)
C130.0150 (10)0.0170 (11)0.0196 (11)−0.0003 (9)0.0039 (8)0.0004 (10)
C140.0149 (10)0.0144 (10)0.0199 (12)−0.0024 (9)0.0037 (8)0.0015 (10)
C150.0188 (11)0.0236 (13)0.0244 (13)0.0078 (10)0.0029 (9)0.0017 (11)
C160.0187 (11)0.0242 (12)0.0229 (13)0.0020 (10)0.0019 (9)0.0041 (11)
C170.0138 (10)0.0163 (11)0.0228 (12)−0.0024 (9)0.0025 (9)0.0011 (10)
C180.0185 (11)0.0193 (12)0.0212 (12)−0.0025 (9)0.0036 (9)−0.0020 (10)
C190.0213 (12)0.0304 (14)0.0181 (12)0.0022 (11)0.0003 (10)0.0009 (11)
C200.0245 (12)0.0232 (13)0.0187 (12)0.0020 (10)0.0018 (9)0.0025 (11)
C210.0226 (13)0.0477 (18)0.0258 (15)0.0027 (13)0.0029 (11)0.0120 (14)
C220.0381 (16)0.0290 (14)0.0294 (16)0.0061 (13)0.0145 (13)0.0078 (13)
C230.0340 (11)0.0552 (16)0.0672 (17)0.0041 (11)0.0088 (11)0.0357 (15)
C240.0340 (11)0.0552 (16)0.0672 (17)0.0041 (11)0.0088 (11)0.0357 (15)
C250.0240 (12)0.0151 (11)0.0297 (14)−0.0007 (10)0.0080 (10)0.0009 (11)
C260.0386 (15)0.0168 (12)0.0260 (14)−0.0028 (11)0.0102 (12)0.0037 (11)
C270.0260 (12)0.0212 (12)0.0232 (13)0.0030 (10)0.0065 (10)0.0006 (11)
O1—C121.215 (3)C15—H15A0.9700
C1—C21.526 (3)C15—H15B0.9700
C1—C251.534 (3)C16—C171.551 (3)
C1—C171.553 (3)C16—H16A0.9700
C1—C141.554 (3)C16—H16B0.9700
C2—C31.535 (3)C17—C181.537 (3)
C2—H2A0.9700C17—H17A0.9800
C2—H2B0.9700C18—C271.521 (4)
C3—C41.537 (3)C18—C191.538 (4)
C3—H3A0.9700C18—H18A0.9800
C3—H3B0.9700C19—C201.528 (4)
C4—C131.547 (3)C19—H19A0.9700
C4—C51.558 (3)C19—H19B0.9700
C4—H4A0.9800C20—C211.519 (4)
C5—C101.519 (3)C20—H20A0.9700
C5—C261.541 (4)C20—H20B0.9700
C5—C61.550 (4)C21—C221.524 (5)
C6—C71.531 (4)C21—H21A0.9700
C6—H6A0.9700C21—H21B0.9700
C6—H6B0.9700C22—C241.502 (4)
C7—C81.527 (5)C22—C231.518 (5)
C7—H7A0.9700C22—H22A0.9800
C7—H7B0.9700C23—H23A0.9600
C8—C91.516 (5)C23—H23B0.9600
C8—H8A0.9700C23—H23C0.9600
C8—H8B0.9700C24—H24A0.9600
C9—C101.513 (4)C24—H24B0.9600
C9—H9A0.9700C24—H24C0.9600
C9—H9B0.9700C25—H25A0.9600
C10—C111.344 (4)C25—H25B0.9600
C11—C121.457 (4)C25—H25C0.9600
C11—H11A0.9300C26—H26A0.9600
C12—C131.528 (3)C26—H26B0.9600
C13—C141.532 (3)C26—H26C0.9600
C13—H13A0.9800C27—H27A0.9600
C14—C151.530 (4)C27—H27B0.9600
C14—H14A0.9800C27—H27C0.9600
C15—C161.545 (3)
C2—C1—C25111.2 (2)C16—C15—H15A111.0
C2—C1—C17115.98 (18)C14—C15—H15B111.0
C25—C1—C17110.3 (2)C16—C15—H15B111.0
C2—C1—C14106.4 (2)H15A—C15—H15B109.0
C25—C1—C14111.92 (18)C15—C16—C17107.5 (2)
C17—C1—C14100.51 (18)C15—C16—H16A110.2
C1—C2—C3111.90 (19)C17—C16—H16A110.2
C1—C2—H2A109.2C15—C16—H16B110.2
C3—C2—H2A109.2C17—C16—H16B110.2
C1—C2—H2B109.2H16A—C16—H16B108.5
C3—C2—H2B109.2C18—C17—C16111.0 (2)
H2A—C2—H2B107.9C18—C17—C1119.3 (2)
C2—C3—C4113.4 (2)C16—C17—C1103.87 (18)
C2—C3—H3A108.9C18—C17—H17A107.4
C4—C3—H3A108.9C16—C17—H17A107.4
C2—C3—H3B108.9C1—C17—H17A107.4
C4—C3—H3B108.9C27—C18—C17114.0 (2)
H3A—C3—H3B107.7C27—C18—C19110.3 (2)
C3—C4—C13111.1 (2)C17—C18—C19111.7 (2)
C3—C4—C5112.6 (2)C27—C18—H18A106.8
C13—C4—C5113.32 (19)C17—C18—H18A106.8
C3—C4—H4A106.4C19—C18—H18A106.8
C13—C4—H4A106.4C20—C19—C18116.3 (2)
C5—C4—H4A106.4C20—C19—H19A108.2
C10—C5—C26107.6 (2)C18—C19—H19A108.2
C10—C5—C6109.0 (2)C20—C19—H19B108.2
C26—C5—C6110.3 (2)C18—C19—H19B108.2
C10—C5—C4110.0 (2)H19A—C19—H19B107.4
C26—C5—C4111.9 (2)C21—C20—C19111.8 (2)
C6—C5—C4108.0 (2)C21—C20—H20A109.3
C7—C6—C5114.4 (2)C19—C20—H20A109.3
C7—C6—H6A108.7C21—C20—H20B109.3
C5—C6—H6A108.7C19—C20—H20B109.3
C7—C6—H6B108.7H20A—C20—H20B107.9
C5—C6—H6B108.7C20—C21—C22115.2 (3)
H6A—C6—H6B107.6C20—C21—H21A108.5
C8—C7—C6109.9 (3)C22—C21—H21A108.5
C8—C7—H7A109.7C20—C21—H21B108.5
C6—C7—H7A109.7C22—C21—H21B108.5
C8—C7—H7B109.7H21A—C21—H21B107.5
C6—C7—H7B109.7C24—C22—C23109.8 (3)
H7A—C7—H7B108.2C24—C22—C21112.6 (3)
C9—C8—C7109.8 (3)C23—C22—C21112.2 (3)
C9—C8—H8A109.7C24—C22—H22A107.3
C7—C8—H8A109.7C23—C22—H22A107.3
C9—C8—H8B109.7C21—C22—H22A107.3
C7—C8—H8B109.7C22—C23—H23A109.5
H8A—C8—H8B108.2C22—C23—H23B109.5
C10—C9—C8112.7 (2)H23A—C23—H23B109.5
C10—C9—H9A109.0C22—C23—H23C109.5
C8—C9—H9A109.0H23A—C23—H23C109.5
C10—C9—H9B109.0H23B—C23—H23C109.5
C8—C9—H9B109.0C22—C24—H24A109.5
H9A—C9—H9B107.8C22—C24—H24B109.5
C11—C10—C9120.3 (2)H24A—C24—H24B109.5
C11—C10—C5122.7 (2)C22—C24—H24C109.5
C9—C10—C5117.0 (2)H24A—C24—H24C109.5
C10—C11—C12124.6 (2)H24B—C24—H24C109.5
C10—C11—H11A117.7C1—C25—H25A109.5
C12—C11—H11A117.7C1—C25—H25B109.5
O1—C12—C11120.5 (2)H25A—C25—H25B109.5
O1—C12—C13123.0 (2)C1—C25—H25C109.5
C11—C12—C13116.5 (2)H25A—C25—H25C109.5
C12—C13—C14113.0 (2)H25B—C25—H25C109.5
C12—C13—C4109.7 (2)C5—C26—H26A109.5
C14—C13—C4109.24 (18)C5—C26—H26B109.5
C12—C13—H13A108.3H26A—C26—H26B109.5
C14—C13—H13A108.3C5—C26—H26C109.5
C4—C13—H13A108.3H26A—C26—H26C109.5
C15—C14—C13120.13 (19)H26B—C26—H26C109.5
C15—C14—C1104.36 (19)C18—C27—H27A109.5
C13—C14—C1113.01 (19)C18—C27—H27B109.5
C15—C14—H14A106.1H27A—C27—H27B109.5
C13—C14—H14A106.1C18—C27—H27C109.5
C1—C14—H14A106.1H27A—C27—H27C109.5
C14—C15—C16103.77 (19)H27B—C27—H27C109.5
C14—C15—H15A111.0
C25—C1—C2—C3−64.6 (3)C5—C4—C13—C1255.4 (3)
C17—C1—C2—C3168.2 (2)C3—C4—C13—C14−52.3 (3)
C14—C1—C2—C357.4 (3)C5—C4—C13—C14179.8 (2)
C1—C2—C3—C4−55.3 (3)C12—C13—C14—C15−53.9 (3)
C2—C3—C4—C1351.4 (3)C4—C13—C14—C15−176.4 (2)
C2—C3—C4—C5179.7 (2)C12—C13—C14—C1−177.8 (2)
C3—C4—C5—C10−173.8 (2)C4—C13—C14—C159.7 (3)
C13—C4—C5—C10−46.6 (3)C2—C1—C14—C15166.22 (19)
C3—C4—C5—C26−54.2 (3)C25—C1—C14—C15−72.2 (2)
C13—C4—C5—C2672.9 (3)C17—C1—C14—C1544.9 (2)
C3—C4—C5—C667.4 (3)C2—C1—C14—C13−61.6 (2)
C13—C4—C5—C6−165.5 (2)C25—C1—C14—C1360.0 (3)
C10—C5—C6—C749.0 (3)C17—C1—C14—C13177.14 (19)
C26—C5—C6—C7−68.9 (3)C13—C14—C15—C16−161.7 (2)
C4—C5—C6—C7168.5 (3)C1—C14—C15—C16−33.7 (2)
C5—C6—C7—C8−57.5 (4)C14—C15—C16—C179.3 (3)
C6—C7—C8—C958.3 (3)C15—C16—C17—C18147.7 (2)
C7—C8—C9—C10−54.5 (3)C15—C16—C17—C118.4 (3)
C8—C9—C10—C11−131.4 (3)C2—C1—C17—C1883.6 (3)
C8—C9—C10—C549.8 (3)C25—C1—C17—C18−43.9 (3)
C26—C5—C10—C11−104.0 (3)C14—C1—C17—C18−162.2 (2)
C6—C5—C10—C11136.3 (3)C2—C1—C17—C16−152.2 (2)
C4—C5—C10—C1118.1 (3)C25—C1—C17—C1680.2 (2)
C26—C5—C10—C974.6 (3)C14—C1—C17—C16−38.0 (2)
C6—C5—C10—C9−45.0 (3)C16—C17—C18—C27−179.6 (2)
C4—C5—C10—C9−163.2 (2)C1—C17—C18—C27−59.0 (3)
C9—C10—C11—C12−177.1 (3)C16—C17—C18—C1954.5 (3)
C5—C10—C11—C121.5 (4)C1—C17—C18—C19175.1 (2)
C10—C11—C12—O1−175.3 (3)C27—C18—C19—C20−65.8 (3)
C10—C11—C12—C137.4 (4)C17—C18—C19—C2062.2 (3)
O1—C12—C13—C1425.7 (3)C18—C19—C20—C21−175.9 (2)
C11—C12—C13—C14−157.1 (2)C19—C20—C21—C22179.7 (2)
O1—C12—C13—C4147.9 (2)C20—C21—C22—C2471.8 (4)
C11—C12—C13—C4−34.9 (3)C20—C21—C22—C23−163.7 (3)
C3—C4—C13—C12−176.7 (2)
  3 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Synthesis and biological evaluation of some thiazolidinone derivatives of steroid as antibacterial agents.

Authors:  Salman Ahmad Khan; Abdullah M Asiri; Abdullah M Asiria; Mohammed Yusuf
Journal:  Eur J Med Chem       Date:  2008-09-16       Impact factor: 6.514

3.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  3 in total

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