Literature DB >> 21587884

4-[(E)-(2,4,5-Trimeth-oxy-benzyl-idene)amino]-1,5-dimethyl-2-phenyl-1H-pyrazol-3(2H)-one.

Hoong-Kun Fun, Madhukar Hemamalini, Abdullah M Asiri, Salman A Khan.   

Abstract

The title compound, C(21)H(23)N(3)O(4), adopts an E configuration about the central C=N double bond and the pyrazolone ring is almost planar, with a maximum deviation of 0.042 (1) Å. The central pyrazolone ring makes dihedral angles of 51.96 (5) and 3.82 (5)° with the attached phenyl and the trimeth-oxy-substituted benzene rings, respectively. The dihedral angle between the phenyl ring and the trimeth-oxy-substituted benzene ring is 50.19 (5)° and an intra-molecular C-H⋯O hydrogen bond generates an S(6) ring motif. The crystal structure is stabilized by inter-molecular C-H⋯O and C-H⋯N hydrogen bonds.

Entities:  

Year:  2010        PMID: 21587884      PMCID: PMC3006971          DOI: 10.1107/S1600536810021586

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to the applications of Schiff bases, see: Vukovic et al. (2010 ▶); Ramesh & Maheswaran (2003 ▶); Dongfang et al. (2008 ▶); Sastry & Rao (1988 ▶); Kamel et al. (2010 ▶). For hydrogen-bond motifs, see: Bernstein et al. (1995 ▶). For the stability of the temperature controller used in the data collection, see: Cosier & Glazer (1986 ▶).

Experimental

Crystal data

C21H23N3O4 M = 381.42 Monoclinic, a = 21.0128 (10) Å b = 7.4242 (4) Å c = 12.5194 (6) Å β = 98.675 (1)° V = 1930.72 (17) Å3 Z = 4 Mo Kα radiation μ = 0.09 mm−1 T = 100 K 0.67 × 0.27 × 0.15 mm

Data collection

Bruker APEXII DUO CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2009 ▶) T min = 0.941, T max = 0.987 23600 measured reflections 5614 independent reflections 4779 reflections with I > 2σ(I) R int = 0.031

Refinement

R[F 2 > 2σ(F 2)] = 0.040 wR(F 2) = 0.123 S = 1.04 5614 reflections 345 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.48 e Å−3 Δρmin = −0.23 e Å−3 Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810021586/hb5480sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810021586/hb5480Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C21H23N3O4F(000) = 808
Mr = 381.42Dx = 1.312 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 8559 reflections
a = 21.0128 (10) Åθ = 2.9–34.8°
b = 7.4242 (4) ŵ = 0.09 mm1
c = 12.5194 (6) ÅT = 100 K
β = 98.675 (1)°Blcok, yellow
V = 1930.72 (17) Å30.67 × 0.27 × 0.15 mm
Z = 4
Bruker APEXII DUO CCD diffractometer5614 independent reflections
Radiation source: fine-focus sealed tube4779 reflections with I > 2σ(I)
graphiteRint = 0.031
φ and ω scansθmax = 30.0°, θmin = 1.0°
Absorption correction: multi-scan (SADABS; Bruker, 2009)h = −29→29
Tmin = 0.941, Tmax = 0.987k = −10→10
23600 measured reflectionsl = −17→17
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.040Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.123H atoms treated by a mixture of independent and constrained refinement
S = 1.04w = 1/[σ2(Fo2) + (0.0771P)2 + 0.3259P] where P = (Fo2 + 2Fc2)/3
5614 reflections(Δ/σ)max < 0.001
345 parametersΔρmax = 0.48 e Å3
0 restraintsΔρmin = −0.22 e Å3
Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K.
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.36912 (3)−0.05337 (10)0.48796 (5)0.01654 (15)
O20.02634 (3)0.14809 (11)0.14482 (6)0.02325 (17)
O30.06645 (3)0.44390 (11)0.06868 (6)0.02140 (17)
O40.27842 (3)0.35928 (10)0.27787 (6)0.01722 (15)
N10.35715 (4)−0.34299 (11)0.55298 (6)0.01452 (16)
N20.30506 (4)−0.45837 (11)0.56225 (6)0.01459 (16)
N30.22306 (4)−0.11616 (11)0.39236 (6)0.01426 (16)
C10.47358 (5)−0.34082 (14)0.59345 (8)0.01773 (19)
C20.52970 (5)−0.35703 (15)0.66770 (9)0.0216 (2)
C30.52678 (5)−0.39395 (14)0.77564 (8)0.0205 (2)
C40.46740 (5)−0.41126 (14)0.81062 (8)0.01797 (19)
C50.41087 (5)−0.39230 (14)0.73777 (7)0.01641 (18)
C60.41448 (4)−0.35847 (13)0.62948 (7)0.01427 (18)
C70.25240 (4)−0.38702 (13)0.49748 (7)0.01383 (18)
C80.26770 (4)−0.22283 (13)0.45728 (7)0.01270 (17)
C90.33566 (4)−0.18791 (13)0.49592 (7)0.01293 (17)
C100.24207 (4)0.03035 (13)0.35116 (7)0.01384 (17)
C110.19674 (4)0.14168 (13)0.27961 (7)0.01385 (18)
C120.13242 (4)0.08699 (14)0.24831 (7)0.01533 (18)
C130.08971 (4)0.18970 (14)0.17891 (8)0.01645 (18)
C140.11121 (4)0.35193 (14)0.13731 (7)0.01642 (19)
C150.17427 (4)0.40938 (14)0.16780 (7)0.01589 (18)
C160.21674 (4)0.30561 (13)0.24024 (7)0.01424 (17)
C170.32012 (5)−0.65126 (14)0.55935 (8)0.0194 (2)
C180.18985 (5)−0.48412 (14)0.47905 (8)0.01728 (19)
C190.00170 (5)−0.00727 (18)0.19178 (11)0.0293 (3)
C200.08640 (5)0.61077 (16)0.02644 (9)0.0223 (2)
C210.29988 (5)0.52608 (14)0.23842 (8)0.01750 (19)
H1A0.4749 (7)−0.319 (2)0.5178 (11)0.025 (3)*
H2A0.5716 (7)−0.342 (2)0.6413 (11)0.027 (4)*
H3A0.5674 (7)−0.413 (2)0.8265 (12)0.028 (4)*
H4A0.4646 (6)−0.4380 (19)0.8855 (11)0.020 (3)*
H5A0.3683 (7)−0.407 (2)0.7601 (11)0.024 (3)*
H10A0.2859 (6)0.0685 (18)0.3651 (10)0.016 (3)*
H12A0.1206 (7)−0.025 (2)0.2767 (11)0.022 (3)*
H15A0.1878 (7)0.520 (2)0.1400 (11)0.020 (3)*
H17A0.2798 (7)−0.723 (2)0.5642 (11)0.024 (3)*
H17B0.3365 (7)−0.684 (2)0.4918 (12)0.027 (4)*
H17C0.3507 (7)−0.673 (2)0.6234 (12)0.030 (4)*
H18A0.1555 (7)−0.411 (2)0.4352 (12)0.030 (4)*
H18B0.1925 (8)−0.601 (2)0.4416 (12)0.033 (4)*
H18C0.1744 (7)−0.511 (2)0.5471 (12)0.032 (4)*
H19A−0.0437 (8)−0.018 (2)0.1586 (13)0.037 (4)*
H19B0.0243 (8)−0.119 (2)0.1720 (13)0.038 (4)*
H19C0.0082 (8)0.003 (3)0.2715 (14)0.042 (4)*
H20A0.1208 (7)0.586 (2)−0.0182 (11)0.024 (3)*
H20B0.1018 (7)0.696 (2)0.0873 (12)0.032 (4)*
H20C0.0475 (7)0.656 (2)−0.0181 (11)0.026 (4)*
H21A0.3011 (7)0.515 (2)0.1612 (12)0.023 (3)*
H21B0.3418 (7)0.545 (2)0.2761 (11)0.025 (4)*
H21C0.2732 (7)0.626 (2)0.2555 (11)0.024 (3)*
U11U22U33U12U13U23
O10.0170 (3)0.0133 (3)0.0192 (3)−0.0013 (3)0.0023 (2)0.0031 (3)
O20.0125 (3)0.0240 (4)0.0322 (4)−0.0015 (3)0.0001 (3)0.0114 (3)
O30.0138 (3)0.0224 (4)0.0272 (4)0.0030 (3)0.0007 (3)0.0132 (3)
O40.0142 (3)0.0164 (3)0.0202 (3)−0.0017 (3)−0.0002 (2)0.0061 (3)
N10.0139 (3)0.0120 (4)0.0170 (3)−0.0004 (3)0.0000 (3)0.0033 (3)
N20.0149 (3)0.0111 (4)0.0172 (3)−0.0007 (3)0.0004 (3)0.0030 (3)
N30.0153 (3)0.0137 (4)0.0137 (3)0.0033 (3)0.0020 (3)0.0020 (3)
C10.0173 (4)0.0173 (5)0.0189 (4)0.0029 (4)0.0038 (3)0.0031 (4)
C20.0151 (4)0.0213 (5)0.0281 (5)0.0019 (4)0.0027 (4)0.0041 (4)
C30.0190 (4)0.0159 (4)0.0243 (5)0.0007 (4)−0.0041 (3)0.0008 (4)
C40.0218 (4)0.0150 (4)0.0158 (4)0.0018 (4)−0.0013 (3)−0.0005 (3)
C50.0173 (4)0.0151 (4)0.0166 (4)0.0019 (3)0.0020 (3)−0.0005 (3)
C60.0148 (4)0.0110 (4)0.0163 (4)0.0020 (3)−0.0001 (3)0.0004 (3)
C70.0153 (4)0.0132 (4)0.0130 (4)0.0014 (3)0.0023 (3)0.0005 (3)
C80.0140 (4)0.0119 (4)0.0122 (3)0.0020 (3)0.0020 (3)0.0007 (3)
C90.0149 (4)0.0119 (4)0.0122 (3)0.0023 (3)0.0026 (3)0.0010 (3)
C100.0145 (4)0.0131 (4)0.0138 (4)0.0025 (3)0.0018 (3)0.0012 (3)
C110.0146 (4)0.0132 (4)0.0140 (4)0.0023 (3)0.0027 (3)0.0024 (3)
C120.0149 (4)0.0143 (4)0.0171 (4)0.0020 (3)0.0037 (3)0.0038 (3)
C130.0122 (4)0.0176 (4)0.0197 (4)0.0017 (3)0.0031 (3)0.0039 (4)
C140.0144 (4)0.0175 (4)0.0176 (4)0.0043 (3)0.0030 (3)0.0056 (3)
C150.0155 (4)0.0154 (4)0.0171 (4)0.0023 (3)0.0035 (3)0.0051 (3)
C160.0131 (4)0.0150 (4)0.0147 (4)0.0013 (3)0.0024 (3)0.0019 (3)
C170.0216 (4)0.0111 (4)0.0244 (5)0.0012 (4)−0.0003 (4)0.0034 (4)
C180.0166 (4)0.0155 (4)0.0196 (4)−0.0020 (3)0.0025 (3)0.0013 (3)
C190.0165 (4)0.0268 (6)0.0443 (7)−0.0026 (4)0.0037 (4)0.0137 (5)
C200.0179 (4)0.0221 (5)0.0268 (5)0.0031 (4)0.0028 (4)0.0124 (4)
C210.0194 (4)0.0139 (4)0.0194 (4)−0.0017 (4)0.0036 (3)0.0029 (3)
O1—C91.2341 (12)C8—C91.4603 (12)
O2—C131.3709 (11)C10—C111.4613 (12)
O2—C191.4268 (14)C10—H10A0.954 (13)
O3—C141.3583 (11)C11—C161.4011 (13)
O3—C201.4342 (13)C11—C121.4090 (13)
O4—C161.3698 (11)C12—C131.3808 (13)
O4—C211.4311 (12)C12—H12A0.949 (15)
N1—C91.3937 (12)C13—C141.4130 (14)
N1—N21.4084 (11)C14—C151.3897 (13)
N1—C61.4261 (11)C15—C161.4029 (12)
N2—C71.3754 (11)C15—H15A0.953 (15)
N2—C171.4683 (13)C17—H17A1.008 (14)
N3—C101.2927 (12)C17—H17B0.990 (14)
N3—C81.3918 (11)C17—H17C0.963 (15)
C1—C61.3898 (13)C18—H18A1.000 (16)
C1—C21.3923 (13)C18—H18B0.990 (17)
C1—H1A0.965 (14)C18—H18C0.977 (15)
C2—C31.3893 (15)C19—H19A0.986 (17)
C2—H2A0.992 (15)C19—H19B1.006 (17)
C3—C41.3892 (15)C19—H19C0.990 (18)
C3—H3A0.995 (15)C20—H20A0.996 (14)
C4—C51.3913 (13)C20—H20B1.007 (16)
C4—H4A0.969 (13)C20—H20C0.976 (15)
C5—C61.3921 (13)C21—H21A0.974 (14)
C5—H5A0.984 (14)C21—H21B0.945 (14)
C7—C81.3753 (13)C21—H21C0.972 (15)
C7—C181.4863 (13)
C13—O2—C19116.72 (8)C13—C12—H12A122.3 (8)
C14—O3—C20117.04 (8)C11—C12—H12A116.3 (8)
C16—O4—C21117.65 (7)O2—C13—C12125.46 (9)
C9—N1—N2110.43 (7)O2—C13—C14115.26 (8)
C9—N1—C6125.90 (8)C12—C13—C14119.28 (8)
N2—N1—C6118.94 (7)O3—C14—C15124.05 (9)
C7—N2—N1106.45 (7)O3—C14—C13115.62 (8)
C7—N2—C17121.21 (8)C15—C14—C13120.33 (8)
N1—N2—C17114.72 (8)C14—C15—C16119.75 (9)
C10—N3—C8119.36 (8)C14—C15—H15A119.3 (8)
C6—C1—C2118.90 (9)C16—C15—H15A120.9 (8)
C6—C1—H1A119.6 (8)O4—C16—C11116.75 (8)
C2—C1—H1A121.5 (8)O4—C16—C15122.63 (9)
C3—C2—C1120.62 (9)C11—C16—C15120.61 (8)
C3—C2—H2A121.2 (8)N2—C17—H17A109.0 (8)
C1—C2—H2A118.2 (8)N2—C17—H17B111.4 (9)
C4—C3—C2119.89 (9)H17A—C17—H17B108.9 (12)
C4—C3—H3A120.6 (9)N2—C17—H17C105.3 (9)
C2—C3—H3A119.4 (9)H17A—C17—H17C108.8 (12)
C3—C4—C5120.18 (9)H17B—C17—H17C113.3 (12)
C3—C4—H4A120.8 (8)C7—C18—H18A111.7 (9)
C5—C4—H4A119.0 (8)C7—C18—H18B112.7 (9)
C4—C5—C6119.34 (9)H18A—C18—H18B107.7 (13)
C4—C5—H5A121.7 (8)C7—C18—H18C111.5 (9)
C6—C5—H5A118.9 (8)H18A—C18—H18C106.4 (12)
C1—C6—C5121.05 (8)H18B—C18—H18C106.5 (13)
C1—C6—N1118.69 (8)O2—C19—H19A106.4 (10)
C5—C6—N1120.26 (8)O2—C19—H19B110.6 (9)
C8—C7—N2110.21 (8)H19A—C19—H19B106.9 (14)
C8—C7—C18128.54 (8)O2—C19—H19C110.6 (11)
N2—C7—C18121.25 (8)H19A—C19—H19C114.1 (14)
C7—C8—N3122.95 (8)H19B—C19—H19C108.1 (14)
C7—C8—C9107.87 (8)O3—C20—H20A109.0 (9)
N3—C8—C9129.17 (8)O3—C20—H20B110.2 (9)
O1—C9—N1124.44 (8)H20A—C20—H20B111.3 (12)
O1—C9—C8131.11 (8)O3—C20—H20C104.0 (9)
N1—C9—C8104.37 (8)H20A—C20—H20C111.0 (11)
N3—C10—C11120.57 (8)H20B—C20—H20C111.1 (12)
N3—C10—H10A121.7 (8)O4—C21—H21A109.1 (9)
C11—C10—H10A117.8 (8)O4—C21—H21B105.8 (9)
C16—C11—C12118.58 (8)H21A—C21—H21B110.2 (12)
C16—C11—C10120.31 (8)O4—C21—H21C111.1 (8)
C12—C11—C10121.11 (8)H21A—C21—H21C112.6 (12)
C13—C12—C11121.40 (9)H21B—C21—H21C107.8 (12)
C9—N1—N2—C78.54 (10)C7—C8—C9—O1−173.56 (9)
C6—N1—N2—C7165.59 (8)N3—C8—C9—O15.87 (16)
C9—N1—N2—C17145.49 (8)C7—C8—C9—N13.25 (10)
C6—N1—N2—C17−57.45 (11)N3—C8—C9—N1−177.33 (9)
C6—C1—C2—C31.32 (16)C8—N3—C10—C11177.82 (8)
C1—C2—C3—C4−1.34 (17)N3—C10—C11—C16176.26 (8)
C2—C3—C4—C50.21 (16)N3—C10—C11—C12−4.03 (14)
C3—C4—C5—C60.91 (16)C16—C11—C12—C131.10 (14)
C2—C1—C6—C5−0.17 (15)C10—C11—C12—C13−178.61 (9)
C2—C1—C6—N1−179.57 (9)C19—O2—C13—C125.04 (16)
C4—C5—C6—C1−0.93 (15)C19—O2—C13—C14−175.23 (10)
C4—C5—C6—N1178.45 (9)C11—C12—C13—O2−179.44 (9)
C9—N1—C6—C1−65.96 (13)C11—C12—C13—C140.83 (15)
N2—N1—C6—C1140.85 (9)C20—O3—C14—C15−0.36 (14)
C9—N1—C6—C5114.64 (11)C20—O3—C14—C13178.96 (9)
N2—N1—C6—C5−38.55 (13)O2—C13—C14—O3−0.49 (13)
N1—N2—C7—C8−6.30 (10)C12—C13—C14—O3179.26 (9)
C17—N2—C7—C8−139.83 (9)O2—C13—C14—C15178.86 (9)
N1—N2—C7—C18173.92 (8)C12—C13—C14—C15−1.40 (15)
C17—N2—C7—C1840.39 (13)O3—C14—C15—C16179.28 (9)
N2—C7—C8—N3−177.54 (8)C13—C14—C15—C160.00 (15)
C18—C7—C8—N32.22 (15)C21—O4—C16—C11179.81 (8)
N2—C7—C8—C91.93 (10)C21—O4—C16—C15−1.66 (13)
C18—C7—C8—C9−178.31 (9)C12—C11—C16—O4176.04 (8)
C10—N3—C8—C7−174.99 (8)C10—C11—C16—O4−4.24 (13)
C10—N3—C8—C95.66 (14)C12—C11—C16—C15−2.52 (14)
N2—N1—C9—O1169.88 (8)C10—C11—C16—C15177.20 (8)
C6—N1—C9—O114.78 (14)C14—C15—C16—O4−176.49 (9)
N2—N1—C9—C8−7.20 (9)C14—C15—C16—C111.98 (14)
C6—N1—C9—C8−162.30 (8)
D—H···AD—HH···AD···AD—H···A
C10—H10A···O10.954 (13)2.331 (13)3.0112 (11)127.8 (10)
C4—H4A···O1i0.969 (13)2.541 (13)3.2628 (12)131.4 (10)
C20—H20A···N3ii0.996 (14)2.577 (14)3.5383 (13)162.1 (12)
C20—H20C···O2iii0.977 (14)2.509 (14)3.4470 (13)160.8 (12)
C20—H20C···O3iii0.977 (14)2.495 (15)3.2779 (13)137.0 (11)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C10—H10A⋯O10.954 (13)2.331 (13)3.0112 (11)127.8 (10)
C4—H4A⋯O1i0.969 (13)2.541 (13)3.2628 (12)131.4 (10)
C20—H20A⋯N3ii0.996 (14)2.577 (14)3.5383 (13)162.1 (12)
C20—H20C⋯O2iii0.977 (14)2.509 (14)3.4470 (13)160.8 (12)
C20—H20C⋯O3iii0.977 (14)2.495 (15)3.2779 (13)137.0 (11)

Symmetry codes: (i) ; (ii) ; (iii) .

  4 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Synthesis, antitumor activity and molecular docking study of novel sulfonamide-Schiff's bases, thiazolidinones, benzothiazinones and their C-nucleoside derivatives.

Authors:  Mohsen M Kamel; Hamed I Ali; Manal M Anwar; Neama A Mohamed; Abdelmohsen M Soliman
Journal:  Eur J Med Chem       Date:  2009-11-11       Impact factor: 6.514

3.  Synthesis, spectra, dioxygen affinity and antifungal activity of Ru(III) Schiff base complexes.

Authors:  R Ramesh; S Maheswaran
Journal:  J Inorg Biochem       Date:  2003-09-01       Impact factor: 4.155

4.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  4 in total
  1 in total

1.  (E)-1-(2,5-Dimethyl-3-thien-yl)-3-(2,4,5-trimeth-oxy-phen-yl)prop-2-en-1-one.

Authors:  Abdullah M Asiri; Salman A Khan; M Nawaz Tahir
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-07-24
  1 in total

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