Literature DB >> 21587881

Pyrrolo-[2,1-c][1,4]benzodiazepine-5,11-dithione.

Sarah Ourahou, Hafid Zouihri, El Mokhtar Essassi, Seik Weng Ng.   

Abstract

The seven-membered fused-ring in the title compound, C(12)H(12)N(2)S(2), adopts a boat conformation (with the two phenyl-ene C atoms representing the stern and the methine C atom the prow). This methine C atom and the tertiary N atom also belong to a five-membered ring, which has an envelope conformation. In the crystal structure, mol-ecules are linked about a center of inversion by pairs of N-H⋯S hydrogen bonds.

Entities:  

Year:  2010        PMID: 21587881      PMCID: PMC3006926          DOI: 10.1107/S1600536810021410

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to pyrrolo­[2,1-c][1,4]benzodiazepine-5,11-dione, see: Antonow et al. (2007 ▶); Kamal et al. (2007 ▶). For a related structure, Neidle et al. (1991 ▶).

Experimental

Crystal data

C12H12N2S2 M = 248.36 Monoclinic, a = 13.9831 (5) Å b = 10.0134 (3) Å c = 8.2670 (3) Å β = 97.089 (1)° V = 1148.68 (7) Å3 Z = 4 Mo Kα radiation μ = 0.44 mm−1 T = 200 K 0.12 × 0.10 × 0.07 mm

Data collection

Bruker X8 APEXII diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.950, T max = 0.970 14013 measured reflections 3017 independent reflections 2117 reflections with I > 2σ(I) R int = 0.055

Refinement

R[F 2 > 2σ(F 2)] = 0.042 wR(F 2) = 0.107 S = 1.01 3017 reflections 193 parameters 12 restraints All H-atom parameters refined Δρmax = 0.39 e Å−3 Δρmin = −0.28 e Å−3 Data collection: APEX2 (Bruker, 2008 ▶); cell refinement: SAINT (Bruker, 2008 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: X-SEED (Barbour, 2001 ▶); software used to prepare material for publication: publCIF (Westrip, 2010 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810021410/xu2774sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810021410/xu2774Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C12H12N2S2F(000) = 520
Mr = 248.36Dx = 1.436 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 2753 reflections
a = 13.9831 (5) Åθ = 2.5–26.5°
b = 10.0134 (3) ŵ = 0.44 mm1
c = 8.2670 (3) ÅT = 200 K
β = 97.089 (1)°Prism, colorless
V = 1148.68 (7) Å30.12 × 0.10 × 0.07 mm
Z = 4
Bruker X8 APEXII diffractometer3017 independent reflections
Radiation source: fine-focus sealed tube2117 reflections with I > 2σ(I)
graphiteRint = 0.055
φ and ω scansθmax = 28.9°, θmin = 1.5°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −18→18
Tmin = 0.950, Tmax = 0.970k = −12→13
14013 measured reflectionsl = −11→11
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.042Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.107All H-atom parameters refined
S = 1.01w = 1/[σ2(Fo2) + (0.047P)2 + 0.5062P] where P = (Fo2 + 2Fc2)/3
3017 reflections(Δ/σ)max = 0.001
193 parametersΔρmax = 0.39 e Å3
12 restraintsΔρmin = −0.28 e Å3
xyzUiso*/Ueq
S10.60817 (4)0.35830 (6)0.60020 (8)0.02972 (16)
S20.92223 (4)0.75918 (6)0.51650 (7)0.02991 (16)
N10.62240 (12)0.61932 (18)0.5884 (2)0.0221 (4)
N20.82707 (11)0.57256 (17)0.6540 (2)0.0196 (4)
C10.65476 (14)0.7511 (2)0.6273 (2)0.0205 (4)
C20.58339 (16)0.8462 (2)0.6410 (3)0.0277 (5)
C30.60718 (17)0.9769 (2)0.6798 (3)0.0318 (5)
C40.70347 (18)1.0143 (2)0.7079 (3)0.0307 (5)
C50.77396 (16)0.9220 (2)0.6894 (3)0.0251 (5)
C60.75250 (14)0.7891 (2)0.6467 (2)0.0191 (4)
C70.83258 (14)0.7001 (2)0.6109 (2)0.0194 (4)
C80.90083 (16)0.4717 (2)0.6291 (3)0.0274 (5)
C90.86119 (16)0.3432 (2)0.6929 (3)0.0284 (5)
C100.80322 (16)0.3926 (2)0.8260 (3)0.0251 (5)
C110.75591 (14)0.5204 (2)0.7555 (2)0.0190 (4)
C120.66077 (14)0.5040 (2)0.6465 (2)0.0205 (4)
H10.5667 (10)0.611 (2)0.534 (2)0.027 (6)*
H20.5176 (8)0.822 (2)0.628 (3)0.034 (7)*
H30.5592 (13)1.0406 (19)0.694 (3)0.030 (6)*
H40.7233 (16)1.1027 (13)0.736 (3)0.032 (7)*
H50.8403 (8)0.948 (2)0.708 (3)0.021 (6)*
H810.9608 (11)0.498 (2)0.697 (2)0.030 (6)*
H820.9116 (16)0.471 (2)0.5138 (14)0.034 (7)*
H910.8196 (14)0.296 (2)0.606 (2)0.029 (6)*
H920.9130 (13)0.281 (2)0.736 (3)0.037 (7)*
H110.7457 (14)0.5865 (16)0.8397 (19)0.017 (5)*
H1010.8467 (13)0.421 (2)0.9245 (19)0.029 (6)*
H1020.7565 (13)0.3271 (18)0.859 (2)0.025 (6)*
U11U22U33U12U13U23
S10.0233 (3)0.0180 (3)0.0459 (3)−0.0022 (2)−0.0034 (2)0.0011 (3)
S20.0248 (3)0.0352 (4)0.0300 (3)−0.0034 (2)0.0043 (2)0.0035 (2)
N10.0172 (9)0.0175 (10)0.0299 (9)−0.0008 (7)−0.0039 (7)−0.0007 (7)
N20.0172 (8)0.0202 (10)0.0211 (8)0.0010 (7)0.0012 (7)−0.0007 (7)
C10.0238 (10)0.0169 (11)0.0202 (9)0.0007 (8)0.0004 (8)−0.0004 (8)
C20.0244 (11)0.0242 (12)0.0344 (12)0.0036 (9)0.0037 (9)−0.0019 (10)
C30.0360 (13)0.0219 (13)0.0382 (13)0.0085 (10)0.0074 (10)−0.0027 (10)
C40.0455 (14)0.0177 (12)0.0289 (11)−0.0002 (10)0.0041 (10)−0.0019 (9)
C50.0300 (12)0.0222 (12)0.0220 (10)−0.0046 (9)−0.0008 (9)0.0023 (9)
C60.0232 (10)0.0180 (11)0.0157 (9)0.0001 (8)0.0013 (8)0.0009 (8)
C70.0191 (10)0.0229 (11)0.0150 (9)−0.0025 (8)−0.0027 (7)−0.0005 (8)
C80.0224 (11)0.0276 (13)0.0317 (12)0.0081 (10)0.0015 (9)−0.0012 (10)
C90.0259 (11)0.0223 (12)0.0351 (12)0.0073 (9)−0.0042 (10)−0.0028 (10)
C100.0296 (12)0.0187 (11)0.0254 (10)0.0021 (9)−0.0035 (9)0.0012 (9)
C110.0221 (10)0.0162 (10)0.0184 (9)0.0004 (8)0.0016 (8)0.0000 (8)
C120.0203 (10)0.0197 (11)0.0224 (10)0.0019 (8)0.0065 (8)−0.0010 (8)
S1—C121.657 (2)C4—H40.947 (10)
S2—C71.665 (2)C5—C61.400 (3)
N1—C121.337 (3)C5—H50.956 (9)
N1—C11.419 (3)C6—C71.489 (3)
N1—H10.855 (10)C8—C91.520 (3)
N2—C71.330 (3)C8—H810.984 (10)
N2—C111.474 (2)C8—H820.984 (9)
N2—C81.476 (3)C9—C101.527 (3)
C1—C21.394 (3)C9—H910.986 (10)
C1—C61.409 (3)C9—H920.986 (10)
C2—C31.379 (3)C10—C111.523 (3)
C2—H20.944 (10)C10—H1010.996 (10)
C3—C41.389 (3)C10—H1020.986 (9)
C3—H30.942 (10)C11—C121.521 (3)
C4—C51.374 (3)C11—H110.984 (9)
C12—N1—C1128.23 (17)N2—C8—C9103.87 (17)
C12—N1—H1113.8 (16)N2—C8—H81107.5 (14)
C1—N1—H1117.1 (16)C9—C8—H81110.5 (14)
C7—N2—C11123.94 (16)N2—C8—H82109.3 (14)
C7—N2—C8123.70 (17)C9—C8—H82116.0 (15)
C11—N2—C8111.65 (16)H81—C8—H82109.2 (19)
C2—C1—C6120.0 (2)C8—C9—C10102.99 (18)
C2—C1—N1116.23 (18)C8—C9—H91110.8 (14)
C6—C1—N1123.69 (18)C10—C9—H91111.3 (13)
C3—C2—C1120.8 (2)C8—C9—H92112.0 (14)
C3—C2—H2118.2 (16)C10—C9—H92112.0 (14)
C1—C2—H2120.9 (16)H91—C9—H92108 (2)
C2—C3—C4119.7 (2)C11—C10—C9103.89 (17)
C2—C3—H3121.1 (15)C11—C10—H101105.2 (14)
C4—C3—H3119.1 (15)C9—C10—H101111.0 (13)
C5—C4—C3119.6 (2)C11—C10—H102113.1 (13)
C5—C4—H4117.6 (15)C9—C10—H102114.2 (13)
C3—C4—H4122.8 (15)H101—C10—H102109.0 (18)
C4—C5—C6122.2 (2)N2—C11—C12107.68 (15)
C4—C5—H5119.9 (14)N2—C11—C10102.94 (16)
C6—C5—H5117.9 (14)C12—C11—C10116.32 (17)
C5—C6—C1117.39 (19)N2—C11—H11109.3 (12)
C5—C6—C7118.44 (18)C12—C11—H11107.4 (12)
C1—C6—C7123.96 (19)C10—C11—H11112.9 (12)
N2—C7—C6116.84 (17)N1—C12—C11113.76 (17)
N2—C7—S2122.59 (16)N1—C12—S1122.01 (15)
C6—C7—S2120.55 (16)C11—C12—S1124.22 (15)
C12—N1—C1—C2−140.9 (2)C5—C6—C7—S2−36.1 (2)
C12—N1—C1—C641.2 (3)C1—C6—C7—S2138.49 (17)
C6—C1—C2—C3−2.6 (3)C7—N2—C8—C9−178.51 (18)
N1—C1—C2—C3179.4 (2)C11—N2—C8—C910.8 (2)
C1—C2—C3—C4−0.9 (3)N2—C8—C9—C10−30.2 (2)
C2—C3—C4—C53.0 (3)C8—C9—C10—C1138.8 (2)
C3—C4—C5—C6−1.6 (3)C7—N2—C11—C1279.1 (2)
C4—C5—C6—C1−1.8 (3)C8—N2—C11—C12−110.28 (18)
C4—C5—C6—C7173.16 (19)C7—N2—C11—C10−157.51 (18)
C2—C1—C6—C53.8 (3)C8—N2—C11—C1013.1 (2)
N1—C1—C6—C5−178.33 (18)C9—C10—C11—N2−31.7 (2)
C2—C1—C6—C7−170.78 (19)C9—C10—C11—C1285.7 (2)
N1—C1—C6—C77.0 (3)C1—N1—C12—C11−6.1 (3)
C11—N2—C7—C6−9.7 (3)C1—N1—C12—S1174.50 (16)
C8—N2—C7—C6−179.26 (17)N2—C11—C12—N1−65.3 (2)
C11—N2—C7—S2171.99 (14)C10—C11—C12—N1179.85 (18)
C8—N2—C7—S22.5 (3)N2—C11—C12—S1114.07 (17)
C5—C6—C7—N2145.61 (19)C10—C11—C12—S1−0.8 (3)
C1—C6—C7—N2−39.8 (3)
D—H···AD—HH···AD···AD—H···A
N1—H1···S1i0.86 (1)2.58 (1)3.411 (2)166 (2)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1⋯S1i0.86 (1)2.58 (1)3.411 (2)166 (2)

Symmetry code: (i) .

  3 in total

1.  Solid-phase synthesis of a library of pyrrolo[2,1-c][1,4]benzodiazepine-5,11-diones with potential antitubercular activity.

Authors:  Ahmed Kamal; K Laxma Reddy; V Devaiah; N Shankaraiah; G Suresh Kumar Reddy; Sadagopan Raghavan
Journal:  J Comb Chem       Date:  2007 Jan-Feb

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  Synthesis of a novel C2-aryl pyrrolo[2,1-c][1,4]benzodiazepine-5,11-dione library: effect of C2-aryl substitution on cytotoxicity and non-covalent DNA binding.

Authors:  Dyeison Antonow; Terence C Jenkins; Philip W Howard; David E Thurston
Journal:  Bioorg Med Chem       Date:  2007-02-02       Impact factor: 3.641

  3 in total
  1 in total

1.  Crystal structure of 1,5-diethyl-1H-1,5-benzodiazepine-2,4(3H,5H)-di-thione.

Authors:  Abderrahman Lamkaddem; Mohamed Harcharras; Abdelillah Shaim; Hafid Zouihri; Bousselham Echchahed; Wenhua Bi
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2015-01-03
  1 in total

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