Literature DB >> 21587866

5-Fluoro-3-(4-fluoro-phenyl-sulfin-yl)-2-methyl-1-benzofuran.

Hong Dae Choi, Pil Ja Seo, Byeng Wha Son, Uk Lee.   

Abstract

In the title compound, C(15)H(10)F(2)O(2)S, the S=O and the 4-fluoro-phenyl groups are located on opposite sides of the plane of benzofuran ring system, and the 4-fluoro-phenyl ring is nearly perpendicular to the benzofuran plane with a dihedral angle of 89.93 (4)°. In the crystal structure, mol-ecules are linked by weak inter-molecular C-H⋯O hydrogen bonding and C-H⋯π inter-actions.

Entities:  

Year:  2010        PMID: 21587866      PMCID: PMC3006853          DOI: 10.1107/S1600536810021823

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the pharmacological activity of benzofuran compounds, see: Aslam et al. (2006 ▶); Galal et al. (2009 ▶); Khan et al. (2005 ▶). For natural products with benzofuran rings, see: Akgul & Anil (2003 ▶); Soekamto et al. (2003 ▶). For the structures of related 3-(4-fluoro­phenyl­sulfin­yl)-2-methyl-1-benzofuran deriv­atives, see: Choi et al. (2010a ▶,b ▶).

Experimental

Crystal data

C15H10F2O2S M = 292.29 Orthorhombic, a = 14.9369 (4) Å b = 10.6284 (3) Å c = 16.1532 (4) Å V = 2564.41 (12) Å3 Z = 8 Mo Kα radiation μ = 0.27 mm−1 T = 174 K 0.40 × 0.32 × 0.28 mm

Data collection

Bruker SMART APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2009 ▶) T min = 0.898, T max = 0.927 22576 measured reflections 2962 independent reflections 2578 reflections with I > 2σ(I) R int = 0.029

Refinement

R[F 2 > 2σ(F 2)] = 0.031 wR(F 2) = 0.091 S = 1.08 2962 reflections 183 parameters H-atom parameters constrained Δρmax = 0.29 e Å−3 Δρmin = −0.32 e Å−3 Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶) and DIAMOND (Brandenburg, 1998 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810021823/xu2777sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810021823/xu2777Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C15H10F2O2SF(000) = 1200
Mr = 292.29Dx = 1.514 Mg m3
Orthorhombic, PbcnMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2n 2abCell parameters from 9962 reflections
a = 14.9369 (4) Åθ = 2.4–27.6°
b = 10.6284 (3) ŵ = 0.27 mm1
c = 16.1532 (4) ÅT = 174 K
V = 2564.41 (12) Å3Block, colourless
Z = 80.40 × 0.32 × 0.28 mm
Bruker SMART APEXII CCD diffractometer2962 independent reflections
Radiation source: rotating anode2578 reflections with I > 2σ(I)
graphite multilayerRint = 0.029
Detector resolution: 10.0 pixels mm-1θmax = 27.6°, θmin = 2.4°
φ and ω scansh = −19→19
Absorption correction: multi-scan (SADABS; Bruker, 2009)k = −13→11
Tmin = 0.898, Tmax = 0.927l = −18→21
22576 measured reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.031H-atom parameters constrained
wR(F2) = 0.091w = 1/[σ2(Fo2) + (0.0448P)2 + 0.984P] where P = (Fo2 + 2Fc2)/3
S = 1.08(Δ/σ)max < 0.001
2962 reflectionsΔρmax = 0.29 e Å3
183 parametersΔρmin = −0.32 e Å3
0 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.0035 (5)
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S10.66618 (2)0.39412 (3)0.07071 (2)0.02868 (12)
F10.74089 (8)0.39246 (10)0.42659 (5)0.0468 (3)
F20.43716 (7)0.81769 (9)0.16672 (7)0.0533 (3)
O10.59409 (7)0.09156 (9)0.19275 (6)0.0308 (2)
O20.76049 (7)0.43398 (11)0.08603 (7)0.0371 (3)
C10.63924 (9)0.27918 (12)0.14445 (8)0.0257 (3)
C20.65824 (8)0.27675 (12)0.23194 (8)0.0244 (3)
C30.69806 (9)0.35842 (13)0.28866 (9)0.0287 (3)
H30.71980.43900.27300.034*
C40.70389 (10)0.31507 (14)0.36869 (9)0.0317 (3)
C50.67501 (10)0.19769 (15)0.39509 (9)0.0334 (3)
H50.68170.17350.45140.040*
C60.63635 (10)0.11614 (13)0.33859 (9)0.0318 (3)
H60.61590.03500.35440.038*
C70.62909 (8)0.15881 (12)0.25823 (8)0.0265 (3)
C80.60257 (9)0.16619 (13)0.12435 (9)0.0287 (3)
C90.57225 (10)0.11157 (15)0.04501 (10)0.0379 (4)
H9A0.50680.10580.04480.057*
H9B0.59790.02730.03840.057*
H9C0.59190.1654−0.00080.057*
C100.59618 (9)0.51953 (13)0.10727 (8)0.0275 (3)
C110.50426 (10)0.50221 (15)0.11532 (10)0.0354 (3)
H110.47860.42150.10660.043*
C120.45059 (10)0.60330 (15)0.13609 (11)0.0401 (4)
H120.38770.59340.14230.048*
C130.49058 (11)0.71859 (14)0.14756 (10)0.0364 (3)
C140.58090 (11)0.73846 (14)0.13999 (10)0.0391 (4)
H140.60610.81950.14880.047*
C150.63445 (10)0.63648 (14)0.11909 (9)0.0342 (3)
H150.69720.64710.11290.041*
U11U22U33U12U13U23
S10.03005 (19)0.0329 (2)0.02308 (18)0.00313 (13)−0.00015 (12)0.00211 (12)
F10.0588 (6)0.0527 (6)0.0289 (5)−0.0174 (5)−0.0098 (4)−0.0059 (4)
F20.0614 (6)0.0369 (5)0.0617 (7)0.0204 (5)0.0077 (5)0.0049 (5)
O10.0328 (5)0.0259 (5)0.0338 (5)−0.0047 (4)−0.0004 (4)−0.0046 (4)
O20.0271 (5)0.0422 (6)0.0421 (6)0.0011 (4)0.0044 (4)0.0098 (5)
C10.0250 (6)0.0265 (6)0.0257 (6)0.0018 (5)−0.0009 (5)−0.0013 (5)
C20.0227 (6)0.0250 (6)0.0256 (6)0.0021 (5)0.0002 (5)−0.0009 (5)
C30.0305 (7)0.0261 (6)0.0294 (7)−0.0034 (5)−0.0007 (5)−0.0014 (5)
C40.0312 (7)0.0363 (7)0.0275 (7)−0.0027 (6)−0.0048 (5)−0.0038 (6)
C50.0342 (7)0.0388 (8)0.0273 (7)0.0008 (6)−0.0016 (6)0.0063 (6)
C60.0331 (7)0.0272 (7)0.0352 (8)−0.0009 (5)0.0024 (6)0.0053 (6)
C70.0248 (6)0.0244 (6)0.0302 (7)0.0002 (5)−0.0003 (5)−0.0031 (5)
C80.0256 (6)0.0302 (7)0.0302 (7)0.0024 (5)−0.0005 (5)−0.0039 (5)
C90.0349 (8)0.0414 (8)0.0373 (8)−0.0003 (6)−0.0064 (6)−0.0134 (6)
C100.0292 (6)0.0289 (7)0.0244 (6)0.0016 (5)−0.0027 (5)0.0035 (5)
C110.0285 (6)0.0306 (7)0.0471 (9)−0.0018 (6)−0.0034 (6)0.0011 (6)
C120.0295 (7)0.0414 (9)0.0493 (10)0.0042 (6)−0.0001 (7)0.0055 (7)
C130.0435 (8)0.0303 (7)0.0352 (8)0.0101 (6)0.0008 (6)0.0064 (6)
C140.0477 (9)0.0267 (7)0.0429 (9)−0.0032 (6)0.0018 (7)0.0028 (6)
C150.0318 (7)0.0334 (7)0.0374 (8)−0.0051 (6)0.0005 (6)0.0041 (6)
S1—O21.492 (1)C6—C71.379 (2)
S1—C11.753 (1)C6—H60.9500
S1—C101.794 (1)C8—C91.478 (2)
F1—C41.363 (2)C9—H9A0.9800
F2—C131.357 (2)C9—H9B0.9800
O1—C81.366 (2)C9—H9C0.9800
O1—C71.379 (2)C10—C151.381 (2)
C1—C81.359 (2)C10—C111.391 (2)
C1—C21.442 (2)C11—C121.382 (2)
C2—C71.393 (2)C11—H110.9500
C2—C31.395 (2)C12—C131.376 (2)
C3—C41.375 (2)C12—H120.9500
C3—H30.9500C13—C141.371 (2)
C4—C51.387 (2)C14—C151.389 (2)
C5—C61.385 (2)C14—H140.9500
C5—H50.9500C15—H150.9500
O2—S1—C1107.57 (6)C1—C8—C9132.66 (14)
O2—S1—C10106.55 (7)O1—C8—C9116.41 (13)
C1—S1—C1099.22 (6)C8—C9—H9A109.5
C8—O1—C7106.51 (10)C8—C9—H9B109.5
C8—C1—C2107.32 (12)H9A—C9—H9B109.5
C8—C1—S1123.09 (10)C8—C9—H9C109.5
C2—C1—S1129.30 (10)H9A—C9—H9C109.5
C7—C2—C3119.53 (12)H9B—C9—H9C109.5
C7—C2—C1104.67 (11)C15—C10—C11120.97 (13)
C3—C2—C1135.77 (13)C15—C10—S1118.22 (11)
C4—C3—C2115.84 (13)C11—C10—S1120.50 (11)
C4—C3—H3122.1C12—C11—C10119.48 (14)
C2—C3—H3122.1C12—C11—H11120.3
F1—C4—C3117.95 (13)C10—C11—H11120.3
F1—C4—C5117.26 (13)C13—C12—C11118.25 (14)
C3—C4—C5124.79 (13)C13—C12—H12120.9
C6—C5—C4119.34 (13)C11—C12—H12120.9
C6—C5—H5120.3F2—C13—C14118.64 (14)
C4—C5—H5120.3F2—C13—C12117.82 (14)
C7—C6—C5116.56 (13)C14—C13—C12123.53 (14)
C7—C6—H6121.7C13—C14—C15117.92 (14)
C5—C6—H6121.7C13—C14—H14121.0
C6—C7—O1125.52 (12)C15—C14—H14121.0
C6—C7—C2123.92 (13)C10—C15—C14119.84 (14)
O1—C7—C2110.55 (12)C10—C15—H15120.1
C1—C8—O1110.93 (12)C14—C15—H15120.1
O2—S1—C1—C8−129.33 (12)C1—C2—C7—O1−0.14 (14)
C10—S1—C1—C8119.93 (12)C2—C1—C8—O11.61 (15)
O2—S1—C1—C243.56 (14)S1—C1—C8—O1175.85 (9)
C10—S1—C1—C2−67.18 (13)C2—C1—C8—C9−177.80 (14)
C8—C1—C2—C7−0.87 (14)S1—C1—C8—C9−3.6 (2)
S1—C1—C2—C7−174.64 (10)C7—O1—C8—C1−1.69 (15)
C8—C1—C2—C3176.94 (15)C7—O1—C8—C9177.83 (12)
S1—C1—C2—C33.2 (2)O2—S1—C10—C1517.87 (13)
C7—C2—C3—C4−1.17 (19)C1—S1—C10—C15129.42 (12)
C1—C2—C3—C4−178.74 (14)O2—S1—C10—C11−168.52 (11)
C2—C3—C4—F1−178.89 (12)C1—S1—C10—C11−56.97 (13)
C2—C3—C4—C51.3 (2)C15—C10—C11—C12−0.5 (2)
F1—C4—C5—C6179.52 (13)S1—C10—C11—C12−173.95 (12)
C3—C4—C5—C6−0.7 (2)C10—C11—C12—C130.4 (2)
C4—C5—C6—C7−0.1 (2)C11—C12—C13—F2179.03 (14)
C5—C6—C7—O1178.89 (12)C11—C12—C13—C14−0.4 (3)
C5—C6—C7—C20.2 (2)F2—C13—C14—C15−179.02 (14)
C8—O1—C7—C6−177.78 (13)C12—C13—C14—C150.4 (2)
C8—O1—C7—C21.10 (14)C11—C10—C15—C140.5 (2)
C3—C2—C7—C60.5 (2)S1—C10—C15—C14174.11 (12)
C1—C2—C7—C6178.75 (13)C13—C14—C15—C10−0.5 (2)
C3—C2—C7—O1−178.39 (11)
Cg is the centroid of the furan ring.
D—H···AD—HH···AD···AD—H···A
C9—H9B···O2i0.982.453.200 (2)133
C14—H14···O2ii0.952.553.270 (2)133
C15—H15···Cgii0.952.983.828 (2)149
Table 1

Hydrogen-bond geometry (Å, °)

Cg is the centroid of the furan ring.

D—H⋯AD—HH⋯ADAD—H⋯A
C9—H9B⋯O2i0.982.453.200 (2)133
C14—H14⋯O2ii0.952.553.270 (2)133
C15—H15⋯Cgii0.952.983.828 (2)149

Symmetry codes: (i) ; (ii) .

  7 in total

1.  Benzofurans and another constituent from seeds of Styrax officinalis.

Authors:  Yurdanur Yayla Akgul; Huseyin Anil
Journal:  Phytochemistry       Date:  2003-08       Impact factor: 4.072

2.  A new structural alternative in benzo[b]furans for antimicrobial activity.

Authors:  M Wahab Khan; M Jahangir Alam; M A Rashid; R Chowdhury
Journal:  Bioorg Med Chem       Date:  2005-08-15       Impact factor: 3.641

3.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

4.  Artoindonesianins X and Y, two isoprenylated 2-arylbenzofurans, from Artocarpus fretessi (Moraceae).

Authors:  Nunuk H Soekamto; Sjamsul A Achmad; Emilio L Ghisalberti; Euis H Hakim; Yana M Syah
Journal:  Phytochemistry       Date:  2003-10       Impact factor: 4.072

5.  Synthesis of potent antitumor and antiviral benzofuran derivatives.

Authors:  Shadia A Galal; Amira S Abd El-All; Mohamed M Abdallah; Hoda I El-Diwani
Journal:  Bioorg Med Chem Lett       Date:  2009-03-21       Impact factor: 2.823

6.  3-(4-Fluoro-phenyl-sulfin-yl)-2,5-dimethyl-1-benzofuran.

Authors:  Hong Dae Choi; Pil Ja Seo; Byeng Wha Son; Uk Lee
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-02-06

7.  5-Bromo-3-(4-fluoro-phenyl-sulfin-yl)-2-methyl-1-benzofuran.

Authors:  Hong Dae Choi; Pil Ja Seo; Byeng Wha Son; Uk Lee
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-05-08
  7 in total
  3 in total

1.  3-(4-Fluoro-phenyl-sulfin-yl)-5-iodo-2,7-dimethyl-1-benzofuran.

Authors:  Hong Dae Choi; Pil Ja Seo; Byeng Wha Son; Uk Lee
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-04-13

2.  5-Bromo-3-(4-fluoro-phenyl-sulfin-yl)-2,7-dimethyl-1-benzofuran.

Authors:  Hong Dae Choi; Pil Ja Seo; Byeng Wha Son; Uk Lee
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-01-12

3.  3-(4-Bromo-phenyl-sulfin-yl)-5-fluoro-2-methyl-1-benzofuran.

Authors:  Hong Dae Choi; Pil Ja Seo; Uk Lee
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-02-17
  3 in total

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