Literature DB >> 21587858

(4-Chloro-phen-yl)methanaminium chloride hemihydrate.

Sofiane Souissi, Wajda Smirani Sta, Salem S Al-Deyab, Mohamed Rzaigui.   

Abstract

In the title hydrated salt, C(7)H(9)ClN(+)·Cl(-)·0.5H(2)O, the water O atom lies on a crystallographic twofold axis. In the crystal, the monoprotonated 4-chloro-benzyl-ammonium cation forms N-H⋯Cl and N-H⋯O hydrogen bonds and the water mol-ecule forms O-H⋯Cl hydrogen bonds, generating layers lying parallel to the bc plane.

Entities:  

Year:  2010        PMID: 21587858      PMCID: PMC3006684          DOI: 10.1107/S1600536810021100

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the properties of benzyl­amines, see: Markwardt et al. (2005 ▶). For a related structure, see: Dhaouadi et al. (2008 ▶).

Experimental

Crystal data

C7H9ClN+·Cl−·0.5H2O M = 187.06 Monoclinic, a = 30.462 (2) Å b = 4.890 (3) Å c = 11.738 (2) Å β = 99.97 (3)° V = 1722.1 (11) Å3 Z = 8 Ag Kα radiation λ = 0.56085 Å μ = 0.35 mm−1 T = 293 K 0.30 × 0.25 × 0.20 mm

Data collection

Enraf–Nonius TurboCAD-4 diffractometer 5908 measured reflections 4207 independent reflections 2217 reflections with I > 2σ(I) R int = 0.031 2 standard reflections every 120 min intensity decay: 5%

Refinement

R[F 2 > 2σ(F 2)] = 0.048 wR(F 2) = 0.130 S = 1.00 4207 reflections 101 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.34 e Å−3 Δρmin = −0.32 e Å−3 Data collection: CAD-4 EXPRESS (Enraf–Nonius, 1994 ▶); cell refinement: CAD-4 EXPRESS; data reduction: XCAD4 (Harms & Wocadlo, 1995 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536810021100/hb5481sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810021100/hb5481Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C7H9ClN+·Cl·0.5H2OF(000) = 776
Mr = 187.06Dx = 1.443 Mg m3
Monoclinic, C2/cAg Kα radiation, λ = 0.56085 Å
Hall symbol: -C 2ycCell parameters from 25 reflections
a = 30.462 (2) Åθ = 9–11°
b = 4.890 (3) ŵ = 0.35 mm1
c = 11.738 (2) ÅT = 293 K
β = 99.97 (3)°Block, colourless
V = 1722.1 (11) Å30.30 × 0.25 × 0.20 mm
Z = 8
Enraf–Nonius TurboCAD-4 diffractometerRint = 0.031
Radiation source: fine-focus sealed tubeθmax = 28.0°, θmin = 2.3°
graphiteh = −50→50
non–profiled ω scansk = 0→8
5908 measured reflectionsl = −5→19
4207 independent reflections2 standard reflections every 120 min
2217 reflections with I > 2σ(I) intensity decay: 5%
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.048H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.130w = 1/[σ2(Fo2) + (0.0585P)2 + 0.2911P] where P = (Fo2 + 2Fc2)/3
S = 1.00(Δ/σ)max = 0.001
4207 reflectionsΔρmax = 0.34 e Å3
101 parametersΔρmin = −0.32 e Å3
0 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.0080 (12)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cl10.049348 (13)0.63727 (9)0.11132 (4)0.04257 (13)
O0.00000.2285 (4)0.25000.0494 (5)
H10.0151 (8)0.323 (5)0.210 (2)0.089 (9)*
C10.12851 (4)0.0280 (3)0.40289 (14)0.0313 (3)
C20.12629 (5)0.1317 (3)0.29253 (14)0.0364 (3)
H20.10480.06610.23280.044*
C30.15582 (5)0.3328 (3)0.26977 (14)0.0371 (3)
H30.15380.40460.19570.045*
C40.18814 (4)0.4244 (3)0.35851 (14)0.0329 (3)
C50.19059 (5)0.3278 (4)0.46938 (15)0.0386 (4)
H50.21210.39470.52890.046*
C60.16065 (5)0.1293 (4)0.49129 (14)0.0380 (3)
H60.16210.06310.56610.046*
C70.09748 (5)−0.1977 (3)0.42512 (18)0.0399 (4)
H7A0.0966−0.33620.36560.048*
H7B0.1090−0.28240.49900.048*
Cl20.225682 (14)0.66901 (9)0.32754 (5)0.04948 (15)
N0.05166 (4)−0.0999 (3)0.42641 (13)0.0404 (3)
H0A0.0347−0.24000.44010.061*
H0B0.0406−0.02610.35820.061*
H0C0.05210.02510.48170.061*
U11U22U33U12U13U23
Cl10.0390 (2)0.0365 (2)0.0527 (3)0.00140 (16)0.00925 (17)0.00195 (19)
O0.0523 (11)0.0428 (10)0.0574 (12)0.0000.0215 (9)0.000
C10.0289 (6)0.0260 (6)0.0403 (8)0.0011 (5)0.0097 (6)−0.0002 (6)
C20.0372 (7)0.0376 (8)0.0333 (8)−0.0070 (6)0.0033 (6)−0.0044 (7)
C30.0441 (8)0.0367 (8)0.0314 (8)−0.0060 (7)0.0086 (6)0.0008 (7)
C40.0281 (6)0.0281 (6)0.0444 (9)−0.0017 (5)0.0117 (6)−0.0042 (6)
C50.0318 (7)0.0436 (9)0.0388 (9)−0.0035 (6)0.0011 (6)−0.0064 (7)
C60.0388 (7)0.0407 (8)0.0342 (8)0.0015 (7)0.0057 (6)0.0049 (7)
C70.0384 (7)0.0263 (7)0.0577 (11)0.0010 (6)0.0153 (7)0.0043 (7)
Cl20.0432 (2)0.0391 (2)0.0709 (3)−0.01276 (17)0.0229 (2)−0.0055 (2)
N0.0339 (6)0.0355 (7)0.0529 (9)−0.0069 (5)0.0101 (6)0.0005 (6)
O—H10.84 (2)C5—C61.386 (2)
C1—C21.382 (2)C5—H50.9300
C1—C61.389 (2)C6—H60.9300
C1—C71.505 (2)C7—N1.4779 (19)
C2—C31.389 (2)C7—H7A0.9700
C2—H20.9300C7—H7B0.9700
C3—C41.379 (2)N—H0A0.8900
C3—H30.9300N—H0B0.8900
C4—C51.374 (2)N—H0C0.8900
C4—Cl21.7361 (15)
C2—C1—C6118.89 (14)C5—C6—C1120.84 (15)
C2—C1—C7120.10 (15)C5—C6—H6119.6
C6—C1—C7120.98 (15)C1—C6—H6119.6
C1—C2—C3120.78 (15)N—C7—C1112.77 (13)
C1—C2—H2119.6N—C7—H7A109.0
C3—C2—H2119.6C1—C7—H7A109.0
C4—C3—C2119.10 (15)N—C7—H7B109.0
C4—C3—H3120.5C1—C7—H7B109.0
C2—C3—H3120.5H7A—C7—H7B107.8
C5—C4—C3121.21 (14)C7—N—H0A109.5
C5—C4—Cl2120.36 (12)C7—N—H0B109.5
C3—C4—Cl2118.42 (13)H0A—N—H0B109.5
C4—C5—C6119.14 (14)C7—N—H0C109.5
C4—C5—H5120.4H0A—N—H0C109.5
C6—C5—H5120.4H0B—N—H0C109.5
D—H···AD—HH···AD···AD—H···A
N—H0A···Cl1i0.892.603.2930 (19)136
N—H0A···Cl1ii0.892.783.417 (2)130
N—H0B···O0.892.042.866 (2)155
N—H0C···Cl1iii0.892.263.144 (2)175
O—H1···Cl10.85 (3)2.28 (3)3.1230 (18)171 (3)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N—H0A⋯Cl1i0.892.603.2930 (19)136
N—H0A⋯Cl1ii0.892.783.417 (2)130
N—H0B⋯O0.892.042.866 (2)155
N—H0C⋯Cl1iii0.892.263.144 (2)175
O—H1⋯Cl10.85 (3)2.28 (3)3.1230 (18)171 (3)

Symmetry codes: (i) ; (ii) ; (iii) .

  2 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Comparative studies on the inhibition of trypsin, plasmin, and thrombin by derivatives of benzylamine and benzamidine.

Authors:  F Markwardt; H Landmann; P Walsmann
Journal:  Eur J Biochem       Date:  1968-12-05
  2 in total

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