Literature DB >> 21587854

(2R*,6S*)-tert-Butyl 2,6-bis-(hydroxy-meth-yl)morpholine-4-carboxyl-ate.

Qian Chen, Bojun Li, Guangxin Xia.   

Abstract

In the title compound, C(11)H(21)NO(5), the H atoms of the hydr-oxy groups are disordered over two positions, each in a 1:1 ratio. In the crystal, inter-molecular O-H⋯O hydrogen bonds link pairs of mol-ecules into centrosymmetric dimers. Weak inter-molecular O-H⋯O inter-actions further link these dimers into chains extended in the [100] direction.

Entities:  

Year:  2010        PMID: 21587854      PMCID: PMC3006686          DOI: 10.1107/S1600536810017599

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For details of the synthesis of 2,6-disubstituted morpholines, see: Dave & Sasaki (2004 ▶); Lupi et al. (2004 ▶).

Experimental

Crystal data

C11H21NO5 M = 247.29 Monoclinic, a = 21.909 (3) Å b = 5.6643 (8) Å c = 22.510 (3) Å β = 107.612 (3)° V = 2662.5 (7) Å3 Z = 8 Mo Kα radiation μ = 0.10 mm−1 T = 293 K 0.45 × 0.34 × 0.21 mm

Data collection

Bruker SMART CCD area-detector diffractometer 6675 measured reflections 2476 independent reflections 1699 reflections with I > 2σ(I) R int = 0.086

Refinement

R[F 2 > 2σ(F 2)] = 0.066 wR(F 2) = 0.199 S = 1.06 2476 reflections 173 parameters 4 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.53 e Å−3 Δρmin = −0.38 e Å−3 Data collection: SMART (Bruker, 2002 ▶); cell refinement: SAINT (Bruker, 2002 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536810017599/cv2712sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810017599/cv2712Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C11H21NO5F(000) = 1072
Mr = 247.29Dx = 1.234 Mg m3
Monoclinic, C2/cMo Kα radiation, λ = 0.71073 Å
a = 21.909 (3) ÅCell parameters from 1734 reflections
b = 5.6643 (8) Åθ = 4.6–44.5°
c = 22.510 (3) ŵ = 0.10 mm1
β = 107.612 (3)°T = 293 K
V = 2662.5 (7) Å3Prismatic, colourless
Z = 80.45 × 0.34 × 0.21 mm
Bruker SMART CCD area-detector diffractometer1699 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.086
graphiteθmax = 25.5°, θmin = 1.9°
φ and ω scansh = −26→25
6675 measured reflectionsk = −6→6
2476 independent reflectionsl = −27→19
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.066Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.199H atoms treated by a mixture of independent and constrained refinement
S = 1.06w = 1/[σ2(Fo2) + (0.0978P)2 + 0.9544P] where P = (Fo2 + 2Fc2)/3
2476 reflections(Δ/σ)max = 0.028
173 parametersΔρmax = 0.53 e Å3
4 restraintsΔρmin = −0.38 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
O10.41734 (8)1.2127 (3)0.00900 (7)0.0487 (5)
O20.33480 (10)1.4453 (4)−0.09361 (9)0.0668 (6)
O30.53146 (9)1.4619 (4)0.06357 (9)0.0638 (6)
O40.28864 (15)0.7185 (5)0.10144 (10)0.1312 (14)
O50.38194 (9)0.7747 (3)0.17686 (8)0.0598 (6)
N10.36921 (10)0.9179 (4)0.08274 (10)0.0584 (6)
C10.34976 (12)1.1868 (5)−0.00456 (11)0.0503 (7)
H10.33351.30980.01720.060*
C20.33469 (15)0.9479 (5)0.01673 (12)0.0650 (8)
H2A0.28900.93440.01020.078*
H2B0.34720.8254−0.00740.078*
C30.43769 (13)0.9642 (5)0.09948 (13)0.0622 (8)
H3A0.45840.84010.08290.075*
H3B0.45580.96430.14450.075*
C40.44998 (11)1.1985 (4)0.07397 (10)0.0477 (6)
H40.43481.32510.09560.057*
C50.32122 (14)1.2194 (5)−0.07387 (12)0.0623 (8)
H5A0.33811.0993−0.09530.075*
H5B0.27521.1985−0.08510.075*
C60.51984 (12)1.2342 (5)0.08203 (12)0.0566 (7)
H6A0.54421.21030.12540.068*
H6B0.53411.11850.05730.068*
C70.34176 (15)0.7944 (5)0.11901 (12)0.0621 (8)
C80.36300 (13)0.6503 (5)0.22584 (11)0.0527 (7)
C90.30285 (16)0.7518 (6)0.23374 (18)0.0880 (11)
H9A0.30610.92080.23580.132*
H9B0.29680.69260.27150.132*
H9C0.26700.70710.19890.132*
C100.3569 (2)0.3929 (6)0.21181 (18)0.1117 (15)
H10A0.32110.36620.17530.168*
H10B0.35030.30980.24650.168*
H10C0.39530.33670.20450.168*
C110.41842 (16)0.7042 (7)0.28251 (14)0.0860 (11)
H11A0.45700.63920.27730.129*
H11B0.41080.63570.31860.129*
H11C0.42300.87210.28780.129*
H2E0.3751 (10)1.474 (9)−0.083 (2)0.050 (15)*0.50
H3E0.5706 (11)1.495 (9)0.074 (3)0.056 (16)*0.50
H2D0.303 (2)1.529 (11)−0.104 (3)0.09 (3)*0.50
H3D0.507 (2)1.477 (10)0.0285 (13)0.055 (16)*0.50
U11U22U33U12U13U23
O10.0563 (11)0.0596 (11)0.0309 (9)−0.0055 (8)0.0143 (8)0.0060 (7)
O20.0609 (14)0.0802 (15)0.0548 (12)−0.0088 (12)0.0109 (11)0.0241 (11)
O30.0524 (12)0.0870 (15)0.0460 (12)−0.0197 (10)0.0059 (10)0.0093 (10)
O40.147 (2)0.169 (3)0.0511 (13)−0.123 (2)−0.0095 (14)0.0263 (15)
O50.0710 (12)0.0721 (12)0.0389 (10)−0.0173 (9)0.0205 (9)0.0112 (8)
N10.0625 (14)0.0725 (15)0.0412 (12)−0.0083 (11)0.0172 (10)0.0176 (11)
C10.0550 (15)0.0575 (16)0.0366 (13)−0.0072 (12)0.0113 (12)0.0049 (11)
C20.083 (2)0.0706 (19)0.0403 (15)−0.0186 (15)0.0171 (14)0.0078 (13)
C30.0615 (17)0.0780 (19)0.0519 (16)0.0106 (14)0.0243 (14)0.0236 (14)
C40.0539 (15)0.0601 (15)0.0305 (12)0.0048 (11)0.0149 (11)0.0068 (11)
C50.0687 (17)0.0713 (18)0.0415 (15)−0.0159 (14)0.0084 (13)0.0121 (13)
C60.0551 (16)0.0737 (19)0.0406 (14)0.0023 (13)0.0143 (12)0.0147 (13)
C70.086 (2)0.0583 (16)0.0398 (15)−0.0304 (15)0.0167 (14)0.0014 (12)
C80.0714 (17)0.0535 (15)0.0382 (14)−0.0117 (12)0.0242 (13)0.0085 (11)
C90.084 (2)0.101 (3)0.096 (3)−0.0023 (18)0.053 (2)0.019 (2)
C100.212 (5)0.0526 (19)0.087 (3)−0.011 (2)0.070 (3)0.0050 (19)
C110.087 (2)0.119 (3)0.0514 (18)−0.0166 (19)0.0197 (17)0.0188 (18)
O1—C41.422 (3)C3—H3A0.9700
O1—C11.426 (3)C3—H3B0.9700
O2—C51.415 (3)C4—C61.499 (3)
O2—H2E0.858 (19)C4—H40.9800
O2—H2D0.82 (2)C5—H5A0.9700
O3—C61.402 (3)C5—H5B0.9700
O3—H3E0.84 (2)C6—H6A0.9700
O3—H3D0.817 (19)C6—H6B0.9700
O4—C71.191 (4)C8—C101.489 (4)
O5—C71.338 (3)C8—C91.497 (4)
O5—C81.470 (3)C8—C111.503 (4)
N1—C71.347 (3)C9—H9A0.9600
N1—C31.456 (3)C9—H9B0.9600
N1—C21.459 (3)C9—H9C0.9600
C1—C21.505 (4)C10—H10A0.9600
C1—C51.506 (3)C10—H10B0.9600
C1—H10.9800C10—H10C0.9600
C2—H2A0.9700C11—H11A0.9600
C2—H2B0.9700C11—H11B0.9600
C3—C41.502 (4)C11—H11C0.9600
C4—O1—C1112.38 (18)C1—C5—H5A109.2
C5—O2—H2E112 (3)O2—C5—H5B109.2
C5—O2—H2D112 (5)C1—C5—H5B109.2
H2E—O2—H2D134 (6)H5A—C5—H5B107.9
C6—O3—H3E113 (4)O3—C6—C4111.0 (2)
C6—O3—H3D105 (4)O3—C6—H6A109.4
H3E—O3—H3D125 (6)C4—C6—H6A109.4
C7—O5—C8121.21 (19)O3—C6—H6B109.4
C7—N1—C3123.4 (2)C4—C6—H6B109.4
C7—N1—C2119.3 (2)H6A—C6—H6B108.0
C3—N1—C2114.8 (2)O4—C7—O5125.6 (2)
O1—C1—C2109.8 (2)O4—C7—N1123.9 (3)
O1—C1—C5106.7 (2)O5—C7—N1110.5 (2)
C2—C1—C5112.2 (2)O5—C8—C10109.7 (2)
O1—C1—H1109.4O5—C8—C9111.3 (2)
C2—C1—H1109.4C10—C8—C9112.0 (3)
C5—C1—H1109.4O5—C8—C11101.6 (2)
N1—C2—C1109.5 (2)C10—C8—C11112.1 (3)
N1—C2—H2A109.8C9—C8—C11109.6 (3)
C1—C2—H2A109.8C8—C9—H9A109.5
N1—C2—H2B109.8C8—C9—H9B109.5
C1—C2—H2B109.8H9A—C9—H9B109.5
H2A—C2—H2B108.2C8—C9—H9C109.5
N1—C3—C4110.5 (2)H9A—C9—H9C109.5
N1—C3—H3A109.5H9B—C9—H9C109.5
C4—C3—H3A109.6C8—C10—H10A109.5
N1—C3—H3B109.6C8—C10—H10B109.5
C4—C3—H3B109.5H10A—C10—H10B109.5
H3A—C3—H3B108.1C8—C10—H10C109.5
O1—C4—C6107.10 (19)H10A—C10—H10C109.5
O1—C4—C3110.5 (2)H10B—C10—H10C109.5
C6—C4—C3111.5 (2)C8—C11—H11A109.5
O1—C4—H4109.2C8—C11—H11B109.5
C6—C4—H4109.2H11A—C11—H11B109.5
C3—C4—H4109.2C8—C11—H11C109.5
O2—C5—C1112.0 (2)H11A—C11—H11C109.5
O2—C5—H5A109.2H11B—C11—H11C109.5
C4—O1—C1—C2−61.4 (3)C2—C1—C5—O2179.3 (2)
C4—O1—C1—C5176.8 (2)O1—C4—C6—O364.6 (3)
C7—N1—C2—C1145.5 (3)C3—C4—C6—O3−174.3 (2)
C3—N1—C2—C1−52.0 (3)C8—O5—C7—O40.4 (5)
O1—C1—C2—N155.4 (3)C8—O5—C7—N1179.1 (2)
C5—C1—C2—N1173.9 (2)C3—N1—C7—O4−165.7 (3)
C7—N1—C3—C4−147.9 (3)C2—N1—C7—O4−4.8 (5)
C2—N1—C3—C450.5 (3)C3—N1—C7—O515.6 (4)
C1—O1—C4—C6−178.62 (19)C2—N1—C7—O5176.5 (2)
C1—O1—C4—C359.7 (3)C7—O5—C8—C1068.9 (4)
N1—C3—C4—O1−52.3 (3)C7—O5—C8—C9−55.7 (3)
N1—C3—C4—C6−171.3 (2)C7—O5—C8—C11−172.3 (3)
O1—C1—C5—O2−60.5 (3)
D—H···AD—HH···AD···AD—H···A
O3—H3D···O3i0.82 (3)2.02 (3)2.809 (4)164 (6)
O2—H2E···O3i0.86 (3)1.99 (3)2.849 (3)176 (5)
O2—H2D···O4ii0.82 (4)2.48 (5)3.269 (4)163 (6)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O3—H3D⋯O3i0.82 (3)2.02 (3)2.809 (4)164 (6)
O2—H2E⋯O3i0.86 (3)1.99 (3)2.849 (3)176 (5)
O2—H2D⋯O4ii0.82 (4)2.48 (5)3.269 (4)163 (6)

Symmetry codes: (i) ; (ii) .

  2 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Facile route to 3,5-disubstituted morpholines: enantioselective synthesis of O-protected trans-3,5-bis(hydroxymethyl)morpholines.

Authors:  Rajesh Dave; N André Sasaki
Journal:  Org Lett       Date:  2004-01-08       Impact factor: 6.005

  2 in total

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