Literature DB >> 21587848

(RS)-1-(1-Acetyl-indolin-5-yl)-2-chloro-propan-1-one.

Xue-Mei Yang1.   

Abstract

The mol-ecule of the title compound, C(13)H(14)ClNO(2), is roughly planar [maximum deviation = 0.060 (2) Å] with the disordered Cl/CH(3) group asymetrically distributed on both sides of the mean plane. Indeed, the Cl and CH(3) located on the stereogenic carbon exchange each other with occupancy factors in the ratio 0.60:0.40. The whole crystal is a racemate. Non-classical C-H⋯O hydrogen bonds and π-π inter-actions [centroid-centroid distance = 3.6959 (9) Å] between symmetry-related phenyl rings stabilize the crystal structure.

Entities:  

Year:  2010        PMID: 21587848      PMCID: PMC3006937          DOI: 10.1107/S1600536810020969

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

The title compound was synthesised as an inter­mediate in a search for a new synthetic route for silodosin, an adrenoceptor antagonist, see: Asselin et al. (2000 ▶); Bremner et al. (2000 ▶); Elworthy et al. (1997 ▶); Sorbera et al. (2001 ▶). For related structures, see: Moreno et al. (1998 ▶); Wang et al. (2007 ▶).

Experimental

Crystal data

C13H14ClNO2 M = 251.70 Triclinic, a = 8.4748 (5) Å b = 9.0928 (5) Å c = 9.4952 (5) Å α = 112.071 (1)° β = 110.345 (1)° γ = 99.913 (1)° V = 595.92 (6) Å3 Z = 2 Mo Kα radiation μ = 0.31 mm−1 T = 173 K 0.46 × 0.36 × 0.15 mm

Data collection

Bruker SMART 1000 CCD diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 2008a ▶) T min = 0.871, T max = 0.955 6682 measured reflections 2594 independent reflections 2242 reflections with I > 2σ(I) R int = 0.018

Refinement

R[F 2 > 2σ(F 2)] = 0.043 wR(F 2) = 0.111 S = 1.18 2594 reflections 178 parameters 3 restraints H-atom parameters constrained Δρmax = 0.27 e Å−3 Δρmin = −0.21 e Å−3 Data collection: SMART (Bruker, 2001 ▶); cell refinement: SAINT-Plus (Bruker, 2003 ▶); data reduction: SAINT-Plus; program(s) used to solve structure: SHELXTL (Sheldrick, 2008b ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEPIII (Burnett & Johnson, 1996 ▶), ORTEP-3 for Windows (Farrugia, 1997 ▶) and PLATON (Spek, 2009 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810020969/dn2565sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810020969/dn2565Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C13H14ClNO2Z = 2
Mr = 251.70F(000) = 264
Triclinic, P1Dx = 1.403 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 8.4748 (5) ÅCell parameters from 4108 reflections
b = 9.0928 (5) Åθ = 2.6–27.0°
c = 9.4952 (5) ŵ = 0.31 mm1
α = 112.071 (1)°T = 173 K
β = 110.345 (1)°Block, colorless
γ = 99.913 (1)°0.46 × 0.36 × 0.15 mm
V = 595.92 (6) Å3
Bruker SMART 1000 CCD diffractometer2594 independent reflections
Radiation source: fine-focus sealed tube2242 reflections with I > 2σ(I)
graphiteRint = 0.018
ω scansθmax = 27.1°, θmin = 2.6°
Absorption correction: multi-scan (SADABS; Sheldrick, 2008a)h = −10→10
Tmin = 0.871, Tmax = 0.955k = −11→11
6682 measured reflectionsl = −12→12
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.043Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.111H-atom parameters constrained
S = 1.18w = 1/[σ2(Fo2) + (0.0322P)2 + 0.3925P] where P = (Fo2 + 2Fc2)/3
2594 reflections(Δ/σ)max = 0.001
178 parametersΔρmax = 0.27 e Å3
3 restraintsΔρmin = −0.20 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
O10.9779 (2)−0.01243 (19)0.2587 (2)0.0410 (4)
O20.35372 (18)0.39091 (17)0.09272 (18)0.0348 (3)
N10.7298 (2)−0.10127 (19)0.28713 (19)0.0271 (3)
C10.6190 (3)−0.2154 (3)0.3214 (3)0.0394 (5)
H1A0.6802−0.19160.44150.047*
H1B0.5956−0.33540.24630.047*
C20.4441 (3)−0.1788 (2)0.2847 (3)0.0323 (4)
H2A0.3427−0.27650.18240.039*
H2B0.4166−0.15260.38270.039*
C30.4790 (2)−0.0270 (2)0.2553 (2)0.0252 (4)
C40.3712 (2)0.0667 (2)0.2265 (2)0.0253 (4)
H40.25940.04270.23000.030*
C50.4281 (2)0.1977 (2)0.1918 (2)0.0249 (4)
C60.5941 (2)0.2322 (2)0.1900 (2)0.0279 (4)
H60.63190.32080.16610.033*
C70.7055 (2)0.1416 (2)0.2219 (2)0.0292 (4)
H70.81880.16770.22170.035*
C80.6455 (2)0.0109 (2)0.2544 (2)0.0245 (4)
C90.8883 (2)−0.1095 (2)0.2860 (2)0.0296 (4)
C100.9462 (3)−0.2455 (3)0.3189 (3)0.0358 (4)
H10A0.8635−0.35680.22390.054*
H10B0.9452−0.23690.42460.054*
H10C1.0679−0.23130.32980.054*
C110.3175 (2)0.3004 (2)0.1525 (2)0.0264 (4)
C120.1597 (3)0.2956 (2)0.1952 (2)0.0306 (4)
H120.10250.17870.17400.037*
C130.0115 (16)0.3460 (17)0.0833 (16)0.058 (4)0.60
H13A−0.08260.34970.12060.087*0.60
H13B−0.04140.2617−0.03700.087*0.60
H13C0.06780.45760.09750.087*0.60
Cl10.2419 (3)0.4356 (3)0.40972 (18)0.0464 (6)0.60
C13B0.244 (2)0.4216 (19)0.4003 (16)0.072 (6)0.40
H13D0.33290.38510.46310.108*0.40
H13E0.14700.41730.43470.108*0.40
H13F0.30080.53790.42580.108*0.40
Cl1B0.0086 (5)0.3588 (5)0.0840 (4)0.0361 (9)0.40
U11U22U33U12U13U23
O10.0371 (8)0.0425 (8)0.0621 (10)0.0207 (7)0.0328 (7)0.0302 (8)
O20.0361 (8)0.0331 (7)0.0443 (8)0.0126 (6)0.0193 (6)0.0256 (7)
N10.0263 (8)0.0247 (7)0.0326 (8)0.0101 (6)0.0141 (6)0.0145 (6)
C10.0302 (10)0.0397 (11)0.0618 (14)0.0153 (9)0.0227 (10)0.0337 (11)
C20.0300 (10)0.0315 (10)0.0448 (11)0.0132 (8)0.0193 (9)0.0236 (9)
C30.0254 (9)0.0245 (8)0.0262 (9)0.0074 (7)0.0123 (7)0.0123 (7)
C40.0241 (8)0.0263 (9)0.0282 (9)0.0089 (7)0.0139 (7)0.0134 (7)
C50.0261 (9)0.0228 (8)0.0234 (8)0.0082 (7)0.0106 (7)0.0092 (7)
C60.0298 (9)0.0242 (9)0.0324 (9)0.0073 (7)0.0160 (8)0.0150 (8)
C70.0269 (9)0.0290 (9)0.0350 (10)0.0095 (7)0.0174 (8)0.0152 (8)
C80.0247 (9)0.0234 (8)0.0240 (8)0.0091 (7)0.0112 (7)0.0094 (7)
C90.0280 (9)0.0282 (9)0.0300 (9)0.0120 (7)0.0137 (8)0.0097 (8)
C100.0338 (10)0.0345 (10)0.0415 (11)0.0183 (8)0.0179 (9)0.0168 (9)
C110.0277 (9)0.0208 (8)0.0253 (9)0.0056 (7)0.0091 (7)0.0094 (7)
C120.0346 (10)0.0273 (9)0.0390 (10)0.0151 (8)0.0197 (8)0.0195 (8)
C130.058 (7)0.049 (6)0.073 (7)0.007 (4)0.035 (5)0.034 (5)
Cl10.0466 (10)0.0642 (12)0.0263 (6)0.0269 (8)0.0168 (6)0.0158 (6)
C13B0.091 (12)0.052 (7)0.118 (12)0.036 (7)0.066 (9)0.060 (8)
Cl1B0.0366 (17)0.0457 (16)0.0344 (14)0.0273 (14)0.0139 (11)0.0231 (12)
O1—C91.225 (2)C7—C81.393 (3)
O2—C111.216 (2)C7—H70.9500
N1—C91.362 (2)C9—C101.504 (3)
N1—C81.408 (2)C10—H10A0.9800
N1—C11.482 (2)C10—H10B0.9800
C1—C21.525 (3)C10—H10C0.9800
C1—H1A0.9900C11—C121.525 (3)
C1—H1B0.9900C12—C131.598 (10)
C2—C31.509 (2)C12—C13B1.641 (13)
C2—H2A0.9900C12—Cl1B1.689 (3)
C2—H2B0.9900C12—Cl11.736 (3)
C3—C41.380 (2)C12—H120.9997
C3—C81.398 (2)C13—H13A0.9800
C4—C51.402 (2)C13—H13B0.9800
C4—H40.9500C13—H13C0.9800
C5—C61.395 (3)C13B—H13D0.9800
C5—C111.487 (2)C13B—H13E0.9800
C6—C71.385 (3)C13B—H13F0.9800
C6—H60.9500
C9—N1—C8126.44 (15)N1—C9—C10116.09 (17)
C9—N1—C1123.37 (15)C9—C10—H10A109.5
C8—N1—C1110.18 (14)C9—C10—H10B109.5
N1—C1—C2105.33 (15)H10A—C10—H10B109.5
N1—C1—H1A110.7C9—C10—H10C109.5
C2—C1—H1A110.7H10A—C10—H10C109.5
N1—C1—H1B110.7H10B—C10—H10C109.5
C2—C1—H1B110.7O2—C11—C5121.51 (17)
H1A—C1—H1B108.8O2—C11—C12119.99 (16)
C3—C2—C1104.15 (15)C5—C11—C12118.47 (15)
C3—C2—H2A110.9C11—C12—C13112.2 (5)
C1—C2—H2A110.9C11—C12—C13B106.7 (7)
C3—C2—H2B110.9C13—C12—C13B112.7 (8)
C1—C2—H2B110.9C11—C12—Cl1B112.0 (2)
H2A—C2—H2B108.9C13—C12—Cl1B2.8 (6)
C4—C3—C8120.43 (16)C13B—C12—Cl1B110.3 (6)
C4—C3—C2129.55 (16)C11—C12—Cl1108.14 (15)
C8—C3—C2109.99 (15)C13—C12—Cl1109.6 (5)
C3—C4—C5119.36 (16)C13B—C12—Cl13.1 (7)
C3—C4—H4120.3Cl1B—C12—Cl1107.28 (18)
C5—C4—H4120.3C11—C12—H12109.1
C6—C5—C4119.17 (16)C13—C12—H12108.7
C6—C5—C11117.85 (16)C13B—C12—H12107.3
C4—C5—C11122.97 (16)Cl1B—C12—H12111.2
C7—C6—C5122.22 (16)Cl1—C12—H12109.0
C7—C6—H6118.9C12—C13—H13A109.5
C5—C6—H6118.9C12—C13—H13B109.5
C6—C7—C8117.69 (17)C12—C13—H13C109.5
C6—C7—H7121.2C12—C13B—H13D109.5
C8—C7—H7121.2C12—C13B—H13E109.5
C7—C8—C3121.11 (16)H13D—C13B—H13E109.5
C7—C8—N1129.13 (16)C12—C13B—H13F109.5
C3—C8—N1109.75 (15)H13D—C13B—H13F109.5
O1—C9—N1121.97 (17)H13E—C13B—H13F109.5
O1—C9—C10121.94 (17)
C9—N1—C1—C2−172.04 (17)C9—N1—C8—C3175.76 (17)
C8—N1—C1—C27.0 (2)C1—N1—C8—C3−3.2 (2)
N1—C1—C2—C3−7.7 (2)C8—N1—C9—O11.8 (3)
C1—C2—C3—C4−175.90 (19)C1—N1—C9—O1−179.33 (19)
C1—C2—C3—C86.2 (2)C8—N1—C9—C10−177.82 (17)
C8—C3—C4—C51.6 (3)C1—N1—C9—C101.1 (3)
C2—C3—C4—C5−176.09 (18)C6—C5—C11—O212.3 (3)
C3—C4—C5—C6−1.0 (3)C4—C5—C11—O2−166.21 (17)
C3—C4—C5—C11177.50 (16)C6—C5—C11—C12−165.37 (16)
C4—C5—C6—C7−0.2 (3)C4—C5—C11—C1216.1 (3)
C11—C5—C6—C7−178.82 (17)O2—C11—C12—C1325.4 (6)
C5—C6—C7—C80.8 (3)C5—C11—C12—C13−156.9 (5)
C6—C7—C8—C3−0.2 (3)O2—C11—C12—C13B−98.5 (6)
C6—C7—C8—N1178.75 (17)C5—C11—C12—C13B79.3 (6)
C4—C3—C8—C7−1.0 (3)O2—C11—C12—Cl1B22.4 (3)
C2—C3—C8—C7177.12 (17)C5—C11—C12—Cl1B−159.9 (2)
C4—C3—C8—N1179.83 (16)O2—C11—C12—Cl1−95.6 (2)
C2—C3—C8—N1−2.0 (2)C5—C11—C12—Cl182.12 (19)
C9—N1—C8—C7−3.3 (3)C5—C11—C12—Cl182.12 (19)
C1—N1—C8—C7177.69 (19)C5—C11—C12—Cl1B−159.9 (2)
D—H···AD—HH···AD···AD—H···A
C1—H1B···O2i0.992.443.252 (3)139
C4—H4···O1ii0.952.483.430 (2)177
C12—H12···O1ii1.002.413.318 (2)151
Centroid–Centroid (Å)Centroid-to-plane (Å)Slippage (Å)
Cg1···Cg1iii3.6959 (9)3.4713 (6)1.269
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C1—H1B⋯O2i0.992.443.252 (3)139
C4—H4⋯O1ii0.952.483.430 (2)177
C12—H12⋯O1ii1.002.413.318 (2)151

Symmetry codes: (i) ; (ii) .

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