Literature DB >> 21587830

(E)-3-[4-(Dimethyl-amino)-benzyl-idene]-2,3-di-hydro-1H,9H-pyrrolo-[2,1-b]quinazolin-9-one.

Burkhon Zh Elmuradov1, Rasul Ya Okmanov, Asqar Sh Abdurazakov, Bakhodir Tashkhodjaev, Khusnutdin M Shakhidoyatov.   

Abstract

The title compound, C(20)H(19)N(3)O, was obtained by condensation of 2,3-dihydro-1H,9H-pyrrolo-[2,1-b]quinazolin-9-one (alkaloid de-oxy-vasicinone, isolated from Peganum Harmala) with 4-(dimethyl-amino)-benzaldehyde in the presence of sodium methoxide. The 2,3-dihydro-1H,9H-pyrrolo-[2,1-b]quinazolin-9-one part of the mol-ecule is roughly planar (r.m.s. deviation = 0.0178 Å) and is essentially coplanar with the benzil-idene ring (r.m.s. deviation = 0.0080 Å), forming a dihedral angle of 5.0 (1)°. The crystal structure is stabilized by two aromatic π-π stacking inter-actions observed between the benzene rings of neighboring mol-ecules [centroid-centroid distance = 3.7555 (19) Å.

Entities:  

Year:  2010        PMID: 21587830      PMCID: PMC3006833          DOI: 10.1107/S1600536810020878

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the synthesis of 2,3-dihydro-1H-pyrrolo­[2,1-b]quinazolin-9-one and the title compound, see: Shakhidoyatov et al. (1977 ▶); Elmuradov et al. (2009 ▶); Shakhidoyatov & Kaysarov, (1998 ▶); Jahng et al. (2008 ▶). For the physiological activity of 2,3-dihydro-1H-pyrrolo­[2,1-b]quinazolin-9-one and its derivatives, see: Chatterjee & Ganguly, (1968 ▶); Al-Shamma et al. (1981 ▶); Johne (1981 ▶); Telezhenetskaya & Yunusov, (1977 ▶); Yunusov et al. (1978 ▶). For related structures, see: Barnes et al. (1985 ▶); Wu et al. (1997 ▶).

Experimental

Crystal data

C20H19N3O M = 317.38 Monoclinic, a = 8.8030 (18) Å b = 16.415 (3) Å c = 11.463 (2) Å β = 105.05 (3)° V = 1599.6 (6) Å3 Z = 4 Cu Kα radiation μ = 0.66 mm−1 T = 300 K 0.60 × 0.20 × 0.15 mm

Data collection

Stoe Stadi-4 four-circle diffractometer Absorption correction: ψ scan (X-RED; Stoe & Cie, 1997 ▶). T min = 0.854, T max = 0.906 2446 measured reflections 2342 independent reflections 1728 reflections with I > 2σ(I) θmax = 60.0° 3 standard reflections every 60 min intensity decay: 10.0%

Refinement

R[F 2 > 2σ(F 2)] = 0.057 wR(F 2) = 0.142 S = 1.13 2342 reflections 220 parameters H-atom parameters constrained Δρmax = 0.16 e Å−3 Δρmin = −0.18 e Å−3 Data collection: STADI4 (Stoe & Cie, 1997 ▶); cell refinement: STADI4; data reduction: X-RED (Stoe & Cie, 1997 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: XP in SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXL97 and PLATON (Spek, 2009 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536810020878/si2264sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810020878/si2264Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C20H19N3OF(000) = 672
Mr = 317.38Dx = 1.318 Mg m3
Monoclinic, P21/cMelting point: 514(2) K
Hall symbol: -P 2ybcCu Kα radiation, λ = 1.54184 Å
a = 8.8030 (18) ÅCell parameters from 12 reflections
b = 16.415 (3) Åθ = 10–20°
c = 11.463 (2) ŵ = 0.66 mm1
β = 105.05 (3)°T = 300 K
V = 1599.6 (6) Å3Prizmatic, light yellow
Z = 40.60 × 0.20 × 0.15 mm
Stoe Stadi-4 four-circle diffractometer1728 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.0000
graphiteθmax = 60.0°, θmin = 4.8°
Scan width (ω) = 1.32 – 1.56, scan ratio 2θ:ω = 0.00 I(Net) and sigma(I) calculated according to Blessing (1987)h = −9→9
Absorption correction: ψ scan (X-RED; Stoe & Cie, 1997).k = 0→18
Tmin = 0.854, Tmax = 0.906l = 0→12
2446 measured reflections3 standard reflections every 60 min
2342 independent reflections intensity decay: 10.0%
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.057H-atom parameters constrained
wR(F2) = 0.142w = 1/[σ2(Fo2) + (0.0446P)2 + 1.0639P] where P = (Fo2 + 2Fc2)/3
S = 1.13(Δ/σ)max < 0.001
2342 reflectionsΔρmax = 0.16 e Å3
220 parametersΔρmin = −0.18 e Å3
0 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.0033 (3)
Experimental. Empirical absorption correction using ψ Scan. Reflections used Mu * R = 0.00 H K L, θ, χ, I~min~/I~max~: -2 1 1 21.1 80.5 0.900
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O1−0.1964 (3)0.57316 (13)0.07780 (19)0.0553 (7)
C10.0365 (4)0.48250 (18)0.2373 (3)0.0496 (9)
H1A0.08180.48800.16910.060*
H1B−0.04320.44020.21970.060*
C20.1634 (4)0.46318 (18)0.3530 (3)0.0435 (8)
H2A0.14350.41070.38510.052*
H2B0.26630.46170.33700.052*
C30.1562 (3)0.52982 (17)0.4410 (3)0.0373 (7)
C3A0.0343 (3)0.58741 (17)0.3798 (2)0.0355 (7)
N4−0.0078 (3)0.65349 (14)0.4246 (2)0.0391 (6)
C4A−0.1278 (3)0.69758 (17)0.3470 (3)0.0378 (7)
C5−0.1799 (4)0.76888 (18)0.3914 (3)0.0459 (8)
H5A−0.13300.78560.47000.055*
C6−0.2995 (4)0.8144 (2)0.3201 (3)0.0495 (8)
H6A−0.33270.86180.35030.059*
C7−0.3707 (4)0.78958 (19)0.2026 (3)0.0476 (8)
H7A−0.45250.82010.15490.057*
C8−0.3213 (3)0.72058 (19)0.1568 (3)0.0452 (8)
H8A−0.36900.70470.07800.054*
C8A−0.1995 (3)0.67373 (17)0.2279 (3)0.0379 (7)
C9−0.1474 (3)0.59996 (18)0.1804 (3)0.0413 (7)
N10−0.0298 (3)0.55973 (14)0.2639 (2)0.0384 (6)
N1'0.7209 (3)0.34893 (18)0.8577 (2)0.0585 (8)
C1'0.3643 (3)0.49063 (17)0.6292 (2)0.0375 (7)
C2'0.4284 (4)0.42189 (18)0.5885 (3)0.0445 (8)
H2'A0.39020.40640.50810.053*
C3'0.5455 (4)0.37605 (19)0.6621 (3)0.0451 (8)
H3'A0.58470.33100.63030.054*
C4'0.6065 (3)0.39601 (18)0.7836 (3)0.0426 (8)
C5'0.5453 (4)0.46547 (19)0.8262 (3)0.0462 (8)
H5'A0.58390.48120.90640.055*
C6'0.4282 (3)0.51068 (18)0.7500 (3)0.0423 (8)
H6'A0.39040.55660.78080.051*
C7'0.2395 (3)0.54038 (17)0.5554 (3)0.0383 (7)
H7'A0.21350.58640.59340.046*
C8'0.7668 (5)0.3632 (3)0.9855 (3)0.0906 (15)
H8'A0.67530.36231.01640.136*
H8'B0.81710.41541.00150.136*
H8'C0.83860.32141.02430.136*
C9'0.7788 (4)0.2766 (2)0.8122 (3)0.0617 (10)
H9'A0.82560.29120.74820.093*
H9'B0.69320.23970.78180.093*
H9'C0.85620.25090.87620.093*
U11U22U33U12U13U23
O10.0632 (15)0.0588 (14)0.0371 (13)0.0057 (12)0.0006 (11)−0.0039 (11)
C10.056 (2)0.0412 (18)0.0468 (19)0.0081 (16)0.0043 (16)−0.0075 (15)
C20.0460 (18)0.0406 (18)0.0415 (17)0.0033 (15)0.0072 (15)−0.0009 (14)
C30.0345 (16)0.0388 (16)0.0379 (16)−0.0011 (13)0.0079 (13)0.0008 (13)
C3A0.0346 (16)0.0360 (16)0.0353 (15)−0.0039 (13)0.0079 (13)−0.0016 (13)
N40.0348 (14)0.0373 (14)0.0418 (14)0.0027 (11)0.0039 (11)−0.0016 (11)
C4A0.0363 (17)0.0348 (16)0.0427 (17)−0.0020 (13)0.0111 (14)0.0033 (13)
C50.0415 (18)0.0440 (19)0.0507 (19)0.0007 (15)0.0093 (15)−0.0026 (15)
C60.0465 (19)0.0432 (18)0.059 (2)0.0066 (15)0.0149 (17)0.0039 (16)
C70.0395 (18)0.0464 (19)0.057 (2)0.0056 (15)0.0124 (15)0.0178 (16)
C80.0378 (17)0.0506 (19)0.0455 (18)0.0015 (15)0.0079 (14)0.0109 (15)
C8A0.0375 (17)0.0371 (17)0.0384 (16)−0.0026 (13)0.0088 (13)0.0044 (13)
C90.0400 (18)0.0453 (18)0.0370 (17)−0.0056 (14)0.0072 (14)0.0017 (14)
N100.0401 (14)0.0368 (14)0.0356 (13)0.0023 (11)0.0051 (11)−0.0017 (11)
N1'0.0514 (17)0.0607 (19)0.0523 (17)0.0112 (15)−0.0062 (14)0.0008 (14)
C1'0.0340 (16)0.0379 (17)0.0383 (16)−0.0034 (13)0.0052 (13)−0.0011 (13)
C2'0.0471 (19)0.0445 (18)0.0385 (17)−0.0001 (15)0.0054 (14)−0.0029 (14)
C3'0.0454 (19)0.0449 (18)0.0431 (18)0.0035 (15)0.0082 (15)0.0014 (15)
C4'0.0336 (17)0.0441 (18)0.0462 (18)−0.0052 (14)0.0033 (14)0.0058 (15)
C5'0.0423 (18)0.0491 (19)0.0414 (18)−0.0042 (16)0.0004 (15)−0.0028 (15)
C6'0.0411 (17)0.0412 (17)0.0426 (17)−0.0020 (14)0.0071 (14)−0.0046 (14)
C7'0.0347 (16)0.0368 (16)0.0430 (17)0.0010 (13)0.0096 (14)−0.0007 (13)
C8'0.092 (3)0.103 (3)0.056 (2)0.034 (3)−0.017 (2)0.000 (2)
C9'0.048 (2)0.055 (2)0.075 (2)0.0088 (18)0.0019 (18)0.0083 (19)
O1—C91.225 (3)C8A—C91.450 (4)
C1—N101.461 (4)C9—N101.382 (4)
C1—C21.529 (4)N1'—C4'1.375 (4)
C1—H1A0.9700N1'—C8'1.434 (4)
C1—H1B0.9700N1'—C9'1.442 (4)
C2—C31.500 (4)C1'—C6'1.392 (4)
C2—H2A0.9700C1'—C2'1.395 (4)
C2—H2B0.9700C1'—C7'1.452 (4)
C3—C7'1.338 (4)C2'—C3'1.374 (4)
C3—C3A1.465 (4)C2'—H2'A0.9300
C3A—N41.295 (3)C3'—C4'1.395 (4)
C3A—N101.378 (3)C3'—H3'A0.9300
N4—C4A1.394 (4)C4'—C5'1.402 (4)
C4A—C51.400 (4)C5'—C6'1.381 (4)
C4A—C8A1.403 (4)C5'—H5'A0.9300
C5—C61.374 (4)C6'—H6'A0.9300
C5—H5A0.9300C7'—H7'A0.9300
C6—C71.390 (4)C8'—H8'A0.9600
C6—H6A0.9300C8'—H8'B0.9600
C7—C81.366 (4)C8'—H8'C0.9600
C7—H7A0.9300C9'—H9'A0.9600
C8—C8A1.397 (4)C9'—H9'B0.9600
C8—H8A0.9300C9'—H9'C0.9600
N10—C1—C2103.9 (2)C3A—N10—C9123.8 (2)
N10—C1—H1A111.0C3A—N10—C1113.7 (2)
C2—C1—H1A111.0C9—N10—C1122.5 (2)
N10—C1—H1B111.0C4'—N1'—C8'120.5 (3)
C2—C1—H1B111.0C4'—N1'—C9'120.7 (3)
H1A—C1—H1B109.0C8'—N1'—C9'118.2 (3)
C3—C2—C1106.4 (2)C6'—C1'—C2'115.5 (3)
C3—C2—H2A110.4C6'—C1'—C7'119.7 (3)
C1—C2—H2A110.4C2'—C1'—C7'124.8 (3)
C3—C2—H2B110.4C3'—C2'—C1'122.8 (3)
C1—C2—H2B110.4C3'—C2'—H2'A118.6
H2A—C2—H2B108.6C1'—C2'—H2'A118.6
C7'—C3—C3A122.2 (3)C2'—C3'—C4'121.1 (3)
C7'—C3—C2130.2 (3)C2'—C3'—H3'A119.4
C3A—C3—C2107.6 (2)C4'—C3'—H3'A119.4
N4—C3A—N10124.8 (3)N1'—C4'—C3'121.0 (3)
N4—C3A—C3126.9 (3)N1'—C4'—C5'121.8 (3)
N10—C3A—C3108.3 (2)C3'—C4'—C5'117.1 (3)
C3A—N4—C4A115.4 (2)C6'—C5'—C4'120.5 (3)
N4—C4A—C5117.9 (3)C6'—C5'—H5'A119.8
N4—C4A—C8A123.4 (3)C4'—C5'—H5'A119.8
C5—C4A—C8A118.7 (3)C5'—C6'—C1'123.0 (3)
C6—C5—C4A120.7 (3)C5'—C6'—H6'A118.5
C6—C5—H5A119.6C1'—C6'—H6'A118.5
C4A—C5—H5A119.6C3—C7'—C1'129.6 (3)
C5—C6—C7120.0 (3)C3—C7'—H7'A115.2
C5—C6—H6A120.0C1'—C7'—H7'A115.2
C7—C6—H6A120.0N1'—C8'—H8'A109.5
C8—C7—C6120.4 (3)N1'—C8'—H8'B109.5
C8—C7—H7A119.8H8'A—C8'—H8'B109.5
C6—C7—H7A119.8N1'—C8'—H8'C109.5
C7—C8—C8A120.3 (3)H8'A—C8'—H8'C109.5
C7—C8—H8A119.8H8'B—C8'—H8'C109.5
C8A—C8—H8A119.8N1'—C9'—H9'A109.5
C8—C8A—C4A119.8 (3)N1'—C9'—H9'B109.5
C8—C8A—C9120.7 (3)H9'A—C9'—H9'B109.5
C4A—C8A—C9119.5 (3)N1'—C9'—H9'C109.5
O1—C9—N10120.5 (3)H9'A—C9'—H9'C109.5
O1—C9—C8A126.4 (3)H9'B—C9'—H9'C109.5
N10—C9—C8A113.1 (3)
  5 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  One-pot synthesis of simple alkaloids: 2,3-polymethylene-4(3H)-quinazolinones, luotonin A, tryptanthrin, and rutaecarpine.

Authors:  Katherine Chae Jahng; Seung Ill Kim; Dong Hyeon Kim; Chang Seob Seo; Jong-Keun Son; Seung Ho Lee; Eung Seok Lee; Yurngdong Jahng
Journal:  Chem Pharm Bull (Tokyo)       Date:  2008-04       Impact factor: 1.645

Review 3.  [Quinazoline derivatives in pharmaceutical research].

Authors:  S Johne
Journal:  Pharmazie       Date:  1981-09       Impact factor: 1.267

4.  Antimicrobial agents from higher plants. Antimicrobial agents from Peganum harmala seeds.

Authors:  A Al-Shamma; S Drake; D L Flynn; L A Mitscher; Y H Park; G S Rao; A Simpson; J K Swayze; T Veysoglu; S T Wu
Journal:  J Nat Prod       Date:  1981 Nov-Dec       Impact factor: 4.050

5.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  5 in total

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