Literature DB >> 21587824

1,4-Diazo-niabicyclo-[2.2.2]octane bis-(2,4,6-trinitro-phenolate).

Weiwei Sima1.   

Abstract

In the title compound, C(6)H(14)N(2) (2+)·2C(6)n class="Species">H(2)N(3)O(7) (-), the cation possesses crystallographically imposed twofold rotation symmetry. In the crystal structure, the cation and anions are linked into a trimeric aggregate by inter-molecular N-H⋯O hydrogen bonds. The trimeric units are further connected by π-π inter-actions [centroid-centroid distances = 3.507 (2)-3.660 (3) Å], forming layers parallel to the bc plane.

Entities:  

Year:  2010        PMID: 21587824      PMCID: PMC3006919          DOI: 10.1107/S1600536810021021

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For a discussion on hydrogen bonding in in the title crystal, see: Kumai et al. (2007 ▶); Horiuchi et al. (2005 ▶). For related structures, see: Dabros et al. (2007 ▶); Jin et al. (2004 ▶); Glidewell et al. (1999 ▶); Chen et al. (2009 ▶).

Experimental

Crystal data

C6H14N2 2+·2C6n class="Species">H2N3O7 − M = 570.40 Monoclinic, a = 15.3808 (11) Å b = 7.1520 (5) Å c = 25.3527 (14) Å β = 125.496 (2)° V = 2270.6 (3) Å3 Z = 4 Mo Kα radiation μ = 0.15 mm−1 T = 93 K 0.1 × 0.1 × 0.1 mm

Data collection

Rigaku SCXmini diffractometer Absorption correction: multi-scan (CrystalClear; Rigaku, 2005 ▶) T min = 0.857, T max = 1.000 10700 measured reflections 2590 independent reflections 2218 reflections with I > 2σ(I) R int = 0.028

Refinement

R[F 2 > 2σ(F 2)] = 0.039 wR(F 2) = 0.098 S = 1.07 2590 reflections 181 parameters H-atom parameters constrained Δρmax = 0.54 e Å−3 Δρmin = −0.59 e Å−3 Data collection: CrystalClear (Rigaku, 2005 ▶); cell refinement: CrystalClear (Rigaku, 2005 ▶); data reduction: CrystalClear (Rigaku, 2005 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: PRPKAPPA (Ferguson, 1999 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536810021021/rz2442sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810021021/rz2442Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C6H14N22+·2C6H2N3O7F(000) = 1176
Mr = 570.40Dx = 1.669 Mg m3
Monoclinic, C2/cMo Kα radiation, λ = 0.71075 Å
Hall symbol: -C 2ycCell parameters from 4042 reflections
a = 15.3808 (11) Åθ = 3.5–27.6°
b = 7.1520 (5) ŵ = 0.15 mm1
c = 25.3527 (14) ÅT = 93 K
β = 125.496 (2)°Prism, yellow
V = 2270.6 (3) Å30.1 × 0.1 × 0.1 mm
Z = 4
Rigaku SCXmini diffractometer2590 independent reflections
Radiation source: fine-focus sealed tube2218 reflections with I > 2σ(I)
graphiteRint = 0.028
Detector resolution: 13.6612 pixels mm-1θmax = 27.5°, θmin = 3.1°
ω scansh = −19→18
Absorption correction: multi-scan (CrystalClear; Rigaku, 2005)k = −9→9
Tmin = 0.857, Tmax = 1.000l = −32→32
10700 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.039Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.098H-atom parameters constrained
S = 1.07w = 1/[σ2(Fo2) + (0.0406P)2 + 3.4753P] where P = (Fo2 + 2Fc2)/3
2590 reflections(Δ/σ)max < 0.001
181 parametersΔρmax = 0.54 e Å3
0 restraintsΔρmin = −0.59 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.06908 (8)0.27695 (17)0.12769 (5)0.0196 (2)
O2−0.12313 (9)0.44433 (16)0.07242 (5)0.0189 (2)
O3−0.23908 (8)0.41893 (16)−0.03110 (5)0.0192 (2)
O4−0.13536 (9)0.27577 (18)−0.16941 (5)0.0248 (3)
O50.01746 (9)0.14572 (17)−0.13108 (5)0.0241 (3)
O60.28037 (11)0.2978 (2)0.13599 (8)0.0563 (5)
O70.23717 (10)0.01540 (18)0.13396 (7)0.0404 (4)
N1−0.14821 (10)0.39809 (17)0.01833 (6)0.0135 (3)
N2−0.04785 (10)0.21799 (18)−0.12408 (6)0.0167 (3)
N30.21729 (10)0.17069 (18)0.11151 (6)0.0156 (3)
N40.00848 (9)0.28214 (18)0.20398 (6)0.0136 (3)
H4A0.01470.28250.16960.016*
C10.03700 (11)0.2720 (2)0.06954 (7)0.0135 (3)
C2−0.06664 (11)0.3209 (2)0.01256 (7)0.0129 (3)
C3−0.09268 (11)0.30461 (19)−0.04961 (7)0.0133 (3)
H3A−0.16160.3403−0.08590.016*
C4−0.01856 (12)0.2367 (2)−0.05864 (7)0.0143 (3)
C50.08530 (12)0.1875 (2)−0.00629 (7)0.0141 (3)
H5A0.13640.1409−0.01260.017*
C60.10876 (11)0.2103 (2)0.05401 (7)0.0137 (3)
C70.01049 (12)0.4793 (2)0.22402 (7)0.0163 (3)
H7A−0.04500.55360.18620.020*
H7B0.08090.53630.24140.020*
C80.10044 (12)0.1762 (2)0.25921 (7)0.0182 (3)
H8A0.16870.23020.27070.022*
H8B0.09730.04380.24680.022*
C9−0.09404 (11)0.1889 (2)0.18263 (7)0.0149 (3)
H9A−0.09700.06210.16600.018*
H9B−0.15520.26200.14740.018*
U11U22U33U12U13U23
O10.0162 (5)0.0311 (6)0.0120 (5)0.0027 (5)0.0085 (4)0.0029 (4)
O20.0207 (5)0.0237 (6)0.0143 (5)0.0014 (4)0.0113 (5)−0.0021 (4)
O30.0138 (5)0.0258 (6)0.0153 (5)0.0029 (4)0.0069 (4)0.0023 (4)
O40.0198 (6)0.0389 (7)0.0128 (5)−0.0009 (5)0.0078 (5)0.0008 (5)
O50.0306 (6)0.0267 (6)0.0222 (6)0.0043 (5)0.0194 (5)−0.0029 (5)
O60.0256 (7)0.0389 (9)0.0517 (9)−0.0181 (6)−0.0076 (7)0.0214 (7)
O70.0271 (7)0.0164 (6)0.0401 (8)0.0023 (5)−0.0020 (6)0.0064 (5)
N10.0144 (6)0.0126 (6)0.0138 (6)−0.0010 (5)0.0083 (5)0.0008 (4)
N20.0201 (6)0.0165 (6)0.0153 (6)−0.0040 (5)0.0114 (5)−0.0029 (5)
N30.0138 (6)0.0181 (6)0.0164 (6)0.0000 (5)0.0096 (5)0.0013 (5)
N40.0142 (6)0.0167 (6)0.0113 (5)0.0000 (5)0.0082 (5)0.0000 (4)
C10.0150 (7)0.0125 (7)0.0137 (6)−0.0023 (5)0.0087 (6)0.0003 (5)
C20.0138 (7)0.0118 (6)0.0147 (6)−0.0013 (5)0.0092 (6)−0.0003 (5)
C30.0140 (6)0.0108 (6)0.0137 (6)−0.0028 (5)0.0073 (6)−0.0002 (5)
C40.0192 (7)0.0118 (7)0.0133 (6)−0.0034 (5)0.0103 (6)−0.0018 (5)
C50.0168 (7)0.0105 (7)0.0182 (7)−0.0008 (5)0.0120 (6)−0.0006 (5)
C60.0129 (6)0.0118 (6)0.0156 (7)−0.0006 (5)0.0078 (6)0.0024 (5)
C70.0199 (7)0.0155 (7)0.0142 (7)−0.0031 (6)0.0102 (6)−0.0015 (5)
C80.0142 (7)0.0256 (8)0.0141 (7)0.0063 (6)0.0077 (6)0.0023 (6)
C90.0137 (6)0.0167 (7)0.0127 (6)−0.0030 (5)0.0067 (6)−0.0027 (5)
O1—C11.2543 (17)C2—C31.3876 (19)
O2—N11.2348 (16)C3—C41.375 (2)
O3—N11.2297 (16)C3—H3A0.9500
O4—N21.2274 (17)C4—C51.405 (2)
O5—N21.2307 (17)C5—C61.361 (2)
O6—N31.2054 (19)C5—H5A0.9500
O7—N31.2037 (18)C7—C7i1.528 (3)
N1—C21.4535 (18)C7—H7A0.9900
N2—C41.4510 (18)C7—H7B0.9900
N3—C61.4718 (18)C8—C9i1.536 (2)
N4—C71.4930 (19)C8—H8A0.9900
N4—C91.4942 (18)C8—H8B0.9900
N4—C81.4952 (18)C9—C8i1.536 (2)
N4—H4A0.9300C9—H9A0.9900
C1—C61.440 (2)C9—H9B0.9900
C1—C21.4409 (19)
O3—N1—O2122.45 (12)C5—C4—N2119.00 (13)
O3—N1—C2118.70 (12)C6—C5—C4116.45 (13)
O2—N1—C2118.83 (12)C6—C5—H5A121.8
O4—N2—O5123.34 (12)C4—C5—H5A121.8
O4—N2—C4118.88 (12)C5—C6—C1126.76 (13)
O5—N2—C4117.78 (12)C5—C6—N3119.86 (13)
O7—N3—O6123.01 (14)C1—C6—N3113.38 (12)
O7—N3—C6118.46 (12)N4—C7—C7i108.68 (7)
O6—N3—C6118.41 (13)N4—C7—H7A110.0
C7—N4—C9110.72 (11)C7i—C7—H7A110.0
C7—N4—C8109.79 (11)N4—C7—H7B110.0
C9—N4—C8109.80 (12)C7i—C7—H7B110.0
C7—N4—H4A108.8H7A—C7—H7B108.3
C9—N4—H4A108.8N4—C8—C9i108.41 (11)
C8—N4—H4A108.8N4—C8—H8A110.0
O1—C1—C6119.29 (13)C9i—C8—H8A110.0
O1—C1—C2128.51 (14)N4—C8—H8B110.0
C6—C1—C2112.20 (12)C9i—C8—H8B110.0
C3—C2—C1122.68 (13)H8A—C8—H8B108.4
C3—C2—N1116.72 (12)N4—C9—C8i108.72 (11)
C1—C2—N1120.56 (12)N4—C9—H9A109.9
C4—C3—C2119.91 (13)C8i—C9—H9A109.9
C4—C3—H3A120.0N4—C9—H9B109.9
C2—C3—H3A120.0C8i—C9—H9B109.9
C3—C4—C5121.92 (13)H9A—C9—H9B108.3
C3—C4—N2119.08 (13)
O1—C1—C2—C3−178.37 (14)N2—C4—C5—C6179.14 (13)
C6—C1—C2—C31.4 (2)C4—C5—C6—C12.8 (2)
O1—C1—C2—N14.2 (2)C4—C5—C6—N3−177.06 (12)
C6—C1—C2—N1−175.98 (12)O1—C1—C6—C5176.35 (14)
O3—N1—C2—C310.33 (19)C2—C1—C6—C5−3.5 (2)
O2—N1—C2—C3−167.99 (13)O1—C1—C6—N3−3.80 (19)
O3—N1—C2—C1−172.10 (13)C2—C1—C6—N3176.37 (12)
O2—N1—C2—C19.59 (19)O7—N3—C6—C5−90.91 (18)
C1—C2—C3—C41.0 (2)O6—N3—C6—C593.1 (2)
N1—C2—C3—C4178.54 (12)O7—N3—C6—C189.23 (18)
C2—C3—C4—C5−1.9 (2)O6—N3—C6—C1−86.80 (19)
C2—C3—C4—N2179.07 (13)C9—N4—C7—C7i55.03 (18)
O4—N2—C4—C35.2 (2)C8—N4—C7—C7i−66.36 (18)
O5—N2—C4—C3−175.42 (13)C7—N4—C8—C9i56.78 (15)
O4—N2—C4—C5−173.87 (13)C9—N4—C8—C9i−65.17 (13)
O5—N2—C4—C55.5 (2)C7—N4—C9—C8i−64.33 (15)
C3—C4—C5—C60.1 (2)C8—N4—C9—C8i57.06 (14)
D—H···AD—HH···AD···AD—H···A
N4—H4A···O10.931.692.589 (2)161
N4—H4A···O20.932.422.954 (2)117
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N4—H4A⋯O10.931.692.589 (2)161
N4—H4A⋯O20.932.422.954 (2)117
  5 in total

1.  Ferroelectricity near room temperature in co-crystals of nonpolar organic molecules.

Authors:  Sachio Horiuchi; Fumiyuki Ishii; Reiji Kumai; Yoichi Okimoto; Hiroaki Tachibana; Naoto Nagaosa; Yoshinori Tokura
Journal:  Nat Mater       Date:  2005-01-23       Impact factor: 43.841

2.  A supramolecular approach to organic alloys: cocrystals and three- and four-component solid solutions of 1,4-diazabicyclo[2.2.2]octane and 4-X-phenols (X=Cl, CH(3), Br).

Authors:  Marta Dabros; Paul R Emery; Venkat R Thalladi
Journal:  Angew Chem Int Ed Engl       Date:  2007       Impact factor: 15.336

3.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

4.  Structural assignment of polarization in hydrogen-bonded supramolecular ferroelectrics.

Authors:  Reiji Kumai; Sachio Horiuchi; Hajime Sagayama; Taka-Hisa Arima; Masashi Watanabe; Yukio Noda; Yoshinori Tokura
Journal:  J Am Chem Soc       Date:  2007-10-09       Impact factor: 15.419

5.  The 1:1 adduct of 5-methylbenzene-1,3-diol (orcin) and 1,4-diazabicyclo[2.2.2]octane.

Authors:  Zhi-Min Jin; Chen-Shui Lin; Hai-Bin Wang; Mao-Lin Hu; Liang Shen; Liang-Ren Huang
Journal:  Acta Crystallogr C       Date:  2004-09-30       Impact factor: 1.172

  5 in total

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