Literature DB >> 21587796

4-Amino-benzoic acid-1,2-bis-(4-pyrid-yl)ethane (2/1).

Fwu Ming Shen, Shie Fu Lush.   

Abstract

In the title compound, C(12)H(12)N(2)·2C(7)H(7)NO(2), the 4-amino-benzoic acid mol-ecules are linked by O-H⋯N hydrogen bonds to 1,2-bis-(4-pyrid-yl)ethane, forming linear hydrogen bonded chains parallel to [21]. The structure exhibits a hydrogen-bonding network involving COOHN(pyrid-yl) and amine and carb-oxy-lic N-H⋯ O inter-actions. In addition, π-π stacking inter-actions [centroid-centroid distance = 3.8622 (14) Å] are also present.

Entities:  

Year:  2010        PMID: 21587796      PMCID: PMC3006685          DOI: 10.1107/S1600536810020337

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For linear hydrogen bonding associations involving 4-amino­benzoic acid, see: Smith et al. (1997 ▶). For related structures, see: Smith et al. (2000 ▶, 2005 ▶); Lynch & McClenaghan (2001 ▶). For hydrogen-bond motifs, see: Etter et al. (1990 ▶).

Experimental

Crystal data

C12H12N2·2C7H7NO2 M = 458.51 Monoclinic, a = 7.3556 (10) Å b = 23.230 (3) Å c = 7.9373 (11) Å β = 115.579 (2)° V = 1223.3 (3) Å3 Z = 2 Mo Kα radiation μ = 0.09 mm−1 T = 297 K 0.76 × 0.34 × 0.22 mm

Data collection

Bruker SMART CCD area-detector diffractometer Absorption correction: multi-scan (SMART; Bruker, 2000 ▶) T min = 0.674, T max = 1.000 6871 measured reflections 2406 independent reflections 1530 reflections with I > 2σ(I) R int = 0.032

Refinement

R[F 2 > 2σ(F 2)] = 0.051 wR(F 2) = 0.165 S = 1.03 2406 reflections 162 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.21 e Å−3 Δρmin = −0.23 e Å−3 Data collection: SMART (Bruker, 2000 ▶); cell refinement: SAINT (Bruker, 1999 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXL97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXS97 (Sheldrick, 2008 ▶); molecular graphics: PLATON (Spek, 2009 ▶); software used to prepare material for publication: PLATON. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810020337/pb2029sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810020337/pb2029Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C12H12N2·2C7H7NO2F(000) = 484
Mr = 458.51Dx = 1.239 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 2347 reflections
a = 7.3556 (10) Åθ = 3.0–23.7°
b = 23.230 (3) ŵ = 0.09 mm1
c = 7.9373 (11) ÅT = 297 K
β = 115.579 (2)°Parallelepiped, colorless
V = 1223.3 (3) Å30.76 × 0.34 × 0.22 mm
Z = 2
Bruker SMART CCD area-detector diffractometer2406 independent reflections
Radiation source: fine-focus sealed tube1530 reflections with I > 2σ(I)
graphiteRint = 0.032
phi and ω scansθmax = 26.1°, θmin = 1.8°
Absorption correction: multi-scan (SMART; Bruker, 2000)h = −9→5
Tmin = 0.674, Tmax = 1.000k = −27→28
6871 measured reflectionsl = −9→9
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.051Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.165H atoms treated by a mixture of independent and constrained refinement
S = 1.03w = 1/[σ2(Fo2) + (0.0959P)2 + 0.0431P] where P = (Fo2 + 2Fc2)/3
2406 reflections(Δ/σ)max < 0.001
162 parametersΔρmax = 0.21 e Å3
0 restraintsΔρmin = −0.23 e Å3
0 constraints
Geometry. Bond distances, angles etc. have been calculated using the rounded fractional coordinates. All su's are estimated from the variances of the (full) variance-covariance matrix. The cell esds are taken into account in the estimation of distances, angles and torsion angles
Refinement. Refinement on F2 for ALL reflections except those flagged by the user for potential systematic errors. Weighted R-factors wR and all goodnesses of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The observed criterion of F2 > σ(F2) is used only for calculating -R-factor-obs etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger.
xyzUiso*/Ueq
N21.1453 (2)0.43421 (8)0.3904 (2)0.0738 (7)
C81.0950 (3)0.48682 (10)0.3233 (3)0.0783 (8)
C90.8987 (3)0.50396 (11)0.2231 (4)0.0864 (9)
C100.7437 (3)0.46541 (11)0.1882 (3)0.0739 (8)
C110.7978 (3)0.41122 (10)0.2571 (3)0.0806 (8)
C120.9970 (3)0.39735 (10)0.3566 (3)0.0826 (9)
C130.5251 (3)0.48182 (15)0.0801 (4)0.1066 (13)
O10.4674 (2)0.33090 (7)0.4157 (2)0.0841 (5)
O20.51671 (19)0.40480 (7)0.6066 (2)0.0837 (6)
N11.3716 (3)0.28863 (10)1.0252 (3)0.0824 (8)
C10.5750 (3)0.35702 (8)0.5572 (3)0.0624 (6)
C20.7798 (3)0.33843 (8)0.6832 (2)0.0560 (6)
C30.8914 (3)0.36554 (8)0.8520 (3)0.0621 (6)
C41.0858 (3)0.34892 (8)0.9655 (3)0.0649 (6)
C51.1749 (3)0.30406 (8)0.9143 (3)0.0601 (6)
C61.0617 (3)0.27578 (9)0.7479 (3)0.0722 (7)
C70.8687 (3)0.29233 (9)0.6355 (3)0.0690 (7)
H8A1.197100.513500.345000.0940*
H9A0.870200.541500.178800.1040*
H11A0.699100.383500.236500.0970*
H12A1.029500.360100.402800.0990*
H13A0.447000.446700.039000.1280*
H13B0.481900.501000.165100.1280*
H1A1.413 (4)0.3021 (12)1.142 (4)0.108 (9)*
H1B1.409 (3)0.2543 (12)0.988 (3)0.095 (8)*
H2A0.387300.412200.527800.1600*
H3A0.833800.395600.889400.0750*
H4A1.158000.368001.077800.0780*
H6A1.118100.245000.712100.0870*
H7A0.795500.272400.525100.0830*
U11U22U33U12U13U23
N20.0497 (10)0.0777 (12)0.0824 (12)0.0081 (8)0.0176 (9)0.0039 (9)
C80.0490 (11)0.0770 (14)0.0935 (16)−0.0026 (10)0.0163 (11)0.0066 (12)
C90.0549 (13)0.0798 (15)0.1084 (18)0.0100 (10)0.0201 (12)0.0279 (13)
C100.0445 (10)0.0941 (16)0.0755 (13)0.0038 (10)0.0189 (9)0.0124 (11)
C110.0565 (13)0.0847 (15)0.0937 (15)−0.0058 (10)0.0260 (12)0.0087 (12)
C120.0670 (14)0.0707 (13)0.1014 (17)0.0099 (11)0.0281 (13)0.0117 (12)
C130.0498 (13)0.146 (3)0.110 (2)0.0138 (13)0.0212 (13)0.0438 (17)
O10.0607 (8)0.0805 (10)0.0741 (9)−0.0025 (7)−0.0058 (7)−0.0085 (8)
O20.0553 (8)0.0796 (10)0.0888 (11)0.0151 (7)0.0052 (7)−0.0106 (8)
N10.0556 (11)0.0881 (14)0.0825 (14)0.0129 (10)0.0100 (10)0.0009 (11)
C10.0496 (10)0.0616 (11)0.0620 (11)−0.0040 (8)0.0110 (9)0.0041 (9)
C20.0480 (10)0.0548 (10)0.0557 (10)−0.0022 (8)0.0134 (8)0.0004 (8)
C30.0574 (11)0.0591 (11)0.0592 (11)0.0088 (8)0.0152 (9)−0.0038 (9)
C40.0570 (11)0.0638 (11)0.0546 (10)0.0021 (9)0.0060 (9)−0.0047 (9)
C50.0483 (10)0.0596 (11)0.0627 (11)0.0042 (8)0.0147 (9)0.0075 (9)
C60.0662 (12)0.0703 (12)0.0705 (12)0.0141 (10)0.0206 (10)−0.0085 (10)
C70.0628 (12)0.0690 (12)0.0593 (11)0.0029 (9)0.0114 (9)−0.0099 (9)
O1—C11.220 (3)C11—H11A0.9300
O2—C11.310 (3)C12—H12A0.9300
O2—H2A0.9000C13—H13B0.9700
N2—C121.320 (3)C13—H13A0.9700
N2—C81.321 (3)C1—C21.468 (3)
N1—C51.377 (3)C2—C71.390 (3)
N1—H1A0.90 (3)C2—C31.384 (3)
N1—H1B0.93 (3)C3—C41.376 (3)
C8—C91.373 (4)C4—C51.382 (3)
C9—C101.381 (4)C5—C61.386 (3)
C10—C131.509 (4)C6—C71.366 (3)
C10—C111.362 (3)C3—H3A0.9300
C11—C121.369 (3)C4—H4A0.9300
C13—C13i1.436 (4)C6—H6A0.9300
C8—H8A0.9300C7—H7A0.9300
C9—H9A0.9300
O1···N1ii3.081 (3)C12···H4Axi3.0000
O1···N1iii3.030 (3)C13···H9Ai2.7900
O2···N2iv2.613 (2)H1A···O1vii2.14 (3)
O1···H1Aiii2.14 (3)H1A···H4A2.3000
O1···H1Bii2.16 (3)H1B···H6A2.3200
O1···H7A2.5700H1B···O1viii2.16 (3)
O1···H11A2.9200H1B···C1viii2.81 (3)
O1···H4Aiii2.8000H2A···C8iv2.6900
O2···H3A2.4500H2A···C12iv2.6200
O2···H8Av2.7400H2A···N2iv1.7200
O2···H13Bvi2.8400H3A···O22.4500
N1···O1vii3.030 (3)H3A···C11xii3.0600
N1···O1viii3.081 (3)H4A···H1A2.3000
N2···O2ix2.613 (2)H4A···C12xii3.0000
N2···C1ix3.368 (3)H4A···O1vii2.8000
N1···H6Ax2.9500H6A···H1B2.3200
N2···H2Aix1.7200H6A···N1xiii2.9500
C1···N2iv3.368 (3)H6A···C4xiii2.8700
C3···C9v3.567 (3)H6A···C5xiii2.8100
C8···C9v3.587 (4)H7A···O12.5700
C9···C8v3.587 (4)H8A···O2v2.7400
C9···C3v3.567 (3)H9A···C4v2.8700
C1···H1Bii2.81 (3)H9A···C13i2.7900
C3···H9Av2.8600H9A···C3v2.8600
C4···H9Av2.8700H9A···H13Ai2.2400
C4···H6Ax2.8700H11A···O12.9200
C5···H6Ax2.8100H11A···H13A2.3500
C7···H12A3.0300H12A···C73.0300
C8···H2Aix2.6900H13A···H11A2.3500
C9···H13Ai2.7500H13A···C9i2.7500
C11···H3Axi3.0600H13A···H9Ai2.2400
C12···H2Aix2.6200H13B···O2vi2.8400
C1—O2—H2A110.00C13i—C13—H13A108.00
C8—N2—C12117.08 (19)C13i—C13—H13B108.00
C5—N1—H1A111 (2)O2—C1—C2114.69 (17)
C5—N1—H1B113.1 (14)O1—C1—O2122.1 (2)
H1A—N1—H1B128 (2)O1—C1—C2123.22 (19)
N2—C8—C9122.9 (2)C1—C2—C7120.41 (16)
C8—C9—C10119.9 (2)C3—C2—C7117.52 (19)
C9—C10—C11116.5 (2)C1—C2—C3122.07 (19)
C11—C10—C13121.1 (2)C2—C3—C4121.4 (2)
C9—C10—C13122.4 (2)C3—C4—C5120.6 (2)
C10—C11—C12120.2 (2)N1—C5—C4120.6 (2)
N2—C12—C11123.3 (2)C4—C5—C6118.1 (2)
C10—C13—C13i117.1 (2)N1—C5—C6121.3 (2)
C9—C8—H8A118.00C5—C6—C7121.1 (2)
N2—C8—H8A119.00C2—C7—C6121.17 (19)
C8—C9—H9A120.00C2—C3—H3A119.00
C10—C9—H9A120.00C4—C3—H3A119.00
C10—C11—H11A120.00C3—C4—H4A120.00
C12—C11—H11A120.00C5—C4—H4A120.00
N2—C12—H12A118.00C5—C6—H6A119.00
C11—C12—H12A118.00C7—C6—H6A119.00
C10—C13—H13B108.00C2—C7—H7A119.00
H13A—C13—H13B107.00C6—C7—H7A119.00
C10—C13—H13A108.00
C12—N2—C8—C90.3 (3)O2—C1—C2—C37.6 (3)
C8—N2—C12—C110.0 (3)O2—C1—C2—C7−172.38 (19)
N2—C8—C9—C10−0.2 (4)C1—C2—C3—C4−177.7 (2)
C8—C9—C10—C11−0.3 (4)C7—C2—C3—C42.3 (3)
C8—C9—C10—C13179.6 (2)C1—C2—C7—C6177.6 (2)
C9—C10—C11—C120.6 (3)C3—C2—C7—C6−2.3 (3)
C13—C10—C11—C12−179.3 (2)C2—C3—C4—C5−0.5 (3)
C9—C10—C13—C13i40.3 (4)C3—C4—C5—N1178.0 (2)
C11—C10—C13—C13i−139.9 (3)C3—C4—C5—C6−1.2 (3)
C10—C11—C12—N2−0.4 (3)N1—C5—C6—C7−178.0 (2)
C10—C13—C13i—C10i−180.0 (2)C4—C5—C6—C71.2 (3)
O1—C1—C2—C3−173.5 (2)C5—C6—C7—C20.6 (3)
O1—C1—C2—C76.5 (3)
D—H···AD—HH···AD···AD—H···A
N1—H1A···O1vii0.90 (3)2.14 (3)3.030 (3)171 (3)
N1—H1B···O1viii0.93 (3)2.16 (3)3.081 (3)172 (2)
O2—H2A···N2iv0.901.722.613 (2)173
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1A⋯O1i0.90 (3)2.14 (3)3.030 (3)171 (3)
N1—H1B⋯O1ii0.93 (3)2.16 (3)3.081 (3)172 (2)
O2—H2A⋯N2iii0.901.722.613 (2)173

Symmetry codes: (i) ; (ii) ; (iii) .

  5 in total

1.  The 1:1 adduct of 4-aminobenzoic acid with 4-aminobenzonitrile.

Authors:  G Smith; R C Bott; D E Lynch
Journal:  Acta Crystallogr C       Date:  2000-09       Impact factor: 1.172

2.  2-amino-4-(4-pyridyl)pyrimidine and the 1:1 adduct with 4-aminobenzoic acid.

Authors:  D E Lynch; I McClenaghan
Journal:  Acta Crystallogr C       Date:  2001-07-09       Impact factor: 1.172

3.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

4.  Graph-set analysis of hydrogen-bond patterns in organic crystals.

Authors:  M C Etter; J C MacDonald; J Bernstein
Journal:  Acta Crystallogr B       Date:  1990-04-01

5.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  5 in total

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