Literature DB >> 21587786

9-(4-Hy-droxy-3-meth-oxy-phen-yl)-3,3,6,6-tetra-methyl-3,4,5,6-tetra-hydro-9H-xanthene-1,8(2H,7H)-dione.

Noorhafizah Hasanudin, Aisyah Saad Abdul Rahim, Nornisah Mohamed, Ching Kheng Quah, Hoong-Kun Fun.   

Abstract

In the title compound, C(24)H(28)O(5), the two cyclo-hexene rings adopt envelope conformations, and the planes through the coplanar atoms makes dihedral angles of 82.86 (6) and 77.90 (6)° with the benzene ring. The two cyclo-hexene rings make a dihedral angle of 5.33 (6)° between their least-squares planes. The pyran ring adopts a flattened boat conformation. In the crystal packing, mol-ecules are linked into two-dimensional networks parallel to the ab plane via O-H⋯O and C-H⋯O inter-actions.

Entities:  

Year:  2010        PMID: 21587786      PMCID: PMC3007007          DOI: 10.1107/S1600536810020258

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the synthesis of the title compound, see: Venkatesan et al. (2008 ▶). For general background to and the biological activity of xanthene derivatives, see: Hafez et al. (2008 ▶); Ashry et al. (2006 ▶); Sill & Sweet (1977 ▶); Ion (1997 ▶); Chibale et al. (2003 ▶). For reference bond lengths, see: Allen et al. (1987 ▶). For the stability of the temperature controller used for the data collection, see: Cosier & Glazer (1986 ▶). For ring conformations, see: Cremer & Pople (1975 ▶).

Experimental

Crystal data

C24H28O5 M = 396.46 Orthorhombic, a = 11.4861 (10) Å b = 11.8659 (11) Å c = 30.087 (3) Å V = 4100.6 (6) Å3 Z = 8 Mo Kα radiation μ = 0.09 mm−1 T = 100 K 0.35 × 0.30 × 0.24 mm

Data collection

Bruker APEXII DUO CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2009 ▶) T min = 0.970, T max = 0.979 26584 measured reflections 5972 independent reflections 4634 reflections with I > 2σ(I) R int = 0.046

Refinement

R[F 2 > 2σ(F 2)] = 0.045 wR(F 2) = 0.136 S = 1.06 5972 reflections 271 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.57 e Å−3 Δρmin = −0.38 e Å−3 Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810020258/rz2454sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810020258/rz2454Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C24H28O5F(000) = 1696
Mr = 396.46Dx = 1.284 Mg m3
Orthorhombic, PbcaMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ac 2abCell parameters from 5544 reflections
a = 11.4861 (10) Åθ = 2.2–31.4°
b = 11.8659 (11) ŵ = 0.09 mm1
c = 30.087 (3) ÅT = 100 K
V = 4100.6 (6) Å3Block, colourless
Z = 80.35 × 0.30 × 0.24 mm
Bruker APEXII DUO CCD area-detector diffractometer5972 independent reflections
Radiation source: fine-focus sealed tube4634 reflections with I > 2σ(I)
graphiteRint = 0.046
φ and ω scansθmax = 30.0°, θmin = 2.2°
Absorption correction: multi-scan (SADABS; Bruker, 2009)h = −16→12
Tmin = 0.970, Tmax = 0.979k = −16→16
26584 measured reflectionsl = −20→42
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.045Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.136H atoms treated by a mixture of independent and constrained refinement
S = 1.06w = 1/[σ2(Fo2) + (0.0729P)2 + 0.8139P] where P = (Fo2 + 2Fc2)/3
5972 reflections(Δ/σ)max = 0.001
271 parametersΔρmax = 0.57 e Å3
0 restraintsΔρmin = −0.38 e Å3
Experimental. The crystal was placed in the cold stream of an Oxford Cyrosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K.
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O1−0.28861 (7)0.40281 (8)0.37337 (3)0.01617 (19)
O20.01386 (8)0.44676 (8)0.26832 (3)0.0228 (2)
O3−0.01627 (8)0.68315 (9)0.41472 (4)0.0257 (2)
O40.35090 (8)0.35573 (8)0.36534 (3)0.0207 (2)
O50.27890 (8)0.17322 (8)0.41056 (4)0.0225 (2)
C1−0.23302 (10)0.38185 (10)0.33355 (4)0.0146 (2)
C2−0.30172 (10)0.30335 (11)0.30502 (4)0.0170 (2)
H2A−0.36160.34540.28950.020*
H2B−0.33980.24770.32360.020*
C3−0.22358 (11)0.24318 (11)0.27099 (4)0.0190 (3)
C4−0.15068 (12)0.33410 (12)0.24770 (5)0.0215 (3)
H4A−0.09830.29790.22680.026*
H4B−0.20230.38260.23080.026*
C5−0.08000 (11)0.40592 (10)0.27917 (4)0.0171 (2)
C6−0.12984 (10)0.42841 (10)0.32340 (4)0.0142 (2)
C7−0.05937 (10)0.49443 (10)0.35702 (4)0.0142 (2)
H7A−0.02280.55900.34230.017*
C8−0.14118 (10)0.53630 (10)0.39271 (4)0.0143 (2)
C9−0.10776 (11)0.63245 (11)0.42079 (4)0.0172 (2)
C10−0.19236 (11)0.67093 (11)0.45628 (5)0.0195 (3)
H10A−0.24280.72830.44380.023*
H10B−0.14870.70540.48030.023*
C11−0.26798 (11)0.57635 (11)0.47544 (4)0.0185 (3)
C12−0.32808 (11)0.51647 (11)0.43638 (4)0.0182 (3)
H12A−0.36460.44790.44710.022*
H12B−0.38880.56490.42470.022*
C13−0.24524 (10)0.48756 (10)0.39991 (4)0.0145 (2)
C140.03504 (10)0.41644 (10)0.37528 (4)0.0144 (2)
C150.15186 (10)0.43068 (10)0.36324 (4)0.0150 (2)
H15A0.17420.49370.34700.018*
C160.23459 (10)0.35118 (11)0.37548 (4)0.0154 (2)
C170.20159 (11)0.25532 (10)0.39955 (4)0.0163 (2)
C180.08671 (11)0.24362 (11)0.41294 (5)0.0192 (3)
H18A0.06480.18200.43010.023*
C190.00419 (11)0.32338 (11)0.40088 (5)0.0186 (3)
H19A−0.07260.31460.41000.022*
C20−0.14395 (12)0.15751 (11)0.29401 (5)0.0253 (3)
H20A−0.19060.10250.30920.038*
H20B−0.09510.19570.31510.038*
H20C−0.09630.12070.27220.038*
C21−0.29993 (13)0.18345 (13)0.23661 (5)0.0291 (3)
H21A−0.34980.13040.25140.044*
H21B−0.25130.14440.21570.044*
H21C−0.34650.23810.22120.044*
C22−0.36133 (12)0.62585 (14)0.50611 (5)0.0282 (3)
H22A−0.32460.66250.53080.042*
H22B−0.41070.56640.51680.042*
H22C−0.40720.67960.48990.042*
C23−0.19191 (13)0.49357 (13)0.50166 (5)0.0280 (3)
H23A−0.15510.53240.52590.042*
H23B−0.13340.46260.48240.042*
H23C−0.23960.43380.51310.042*
C240.39966 (11)0.46439 (12)0.35714 (5)0.0238 (3)
H24A0.48310.45940.35770.036*
H24B0.37390.51600.37970.036*
H24C0.37480.49080.32850.036*
H14O0.3488 (19)0.1956 (19)0.4055 (8)0.047 (6)*
U11U22U33U12U13U23
O10.0129 (4)0.0191 (4)0.0165 (4)−0.0030 (3)0.0024 (3)−0.0032 (3)
O20.0224 (5)0.0237 (5)0.0223 (5)−0.0030 (4)0.0075 (4)0.0022 (4)
O30.0185 (5)0.0247 (5)0.0339 (6)−0.0067 (4)0.0031 (4)−0.0047 (4)
O40.0105 (4)0.0246 (5)0.0272 (5)0.0030 (3)0.0023 (3)0.0053 (4)
O50.0165 (5)0.0195 (5)0.0315 (5)0.0044 (4)−0.0038 (4)0.0044 (4)
C10.0140 (5)0.0146 (5)0.0152 (5)0.0022 (4)0.0005 (4)0.0006 (4)
C20.0153 (5)0.0179 (5)0.0179 (6)−0.0010 (4)−0.0009 (4)−0.0017 (5)
C30.0214 (6)0.0169 (6)0.0187 (6)−0.0027 (5)0.0022 (5)−0.0026 (5)
C40.0263 (7)0.0216 (6)0.0166 (6)−0.0029 (5)0.0036 (5)−0.0008 (5)
C50.0205 (6)0.0143 (5)0.0166 (6)0.0021 (4)0.0024 (5)0.0028 (5)
C60.0132 (5)0.0135 (5)0.0159 (5)0.0021 (4)0.0003 (4)0.0024 (4)
C70.0106 (5)0.0146 (5)0.0173 (6)0.0004 (4)0.0012 (4)0.0017 (4)
C80.0114 (5)0.0148 (5)0.0166 (5)0.0015 (4)−0.0001 (4)0.0015 (4)
C90.0144 (5)0.0166 (5)0.0206 (6)0.0004 (4)−0.0021 (5)0.0007 (5)
C100.0165 (6)0.0202 (6)0.0219 (6)−0.0002 (5)−0.0008 (5)−0.0049 (5)
C110.0155 (5)0.0237 (6)0.0163 (6)−0.0008 (5)0.0010 (5)−0.0023 (5)
C120.0127 (5)0.0229 (6)0.0191 (6)−0.0005 (4)0.0017 (4)−0.0036 (5)
C130.0119 (5)0.0161 (5)0.0156 (5)0.0006 (4)−0.0011 (4)−0.0001 (5)
C140.0116 (5)0.0152 (5)0.0164 (5)0.0014 (4)−0.0005 (4)−0.0004 (4)
C150.0129 (5)0.0156 (5)0.0164 (5)−0.0004 (4)0.0002 (4)0.0008 (4)
C160.0112 (5)0.0199 (6)0.0151 (5)0.0013 (4)−0.0007 (4)−0.0016 (5)
C170.0141 (5)0.0177 (6)0.0171 (6)0.0026 (4)−0.0031 (4)−0.0001 (5)
C180.0169 (6)0.0173 (6)0.0235 (6)−0.0005 (4)−0.0003 (5)0.0043 (5)
C190.0130 (5)0.0193 (6)0.0235 (6)−0.0002 (4)0.0016 (5)0.0028 (5)
C200.0260 (7)0.0145 (6)0.0354 (8)0.0013 (5)0.0065 (6)0.0001 (6)
C210.0334 (8)0.0288 (7)0.0252 (7)−0.0090 (6)0.0034 (6)−0.0102 (6)
C220.0221 (7)0.0409 (8)0.0216 (7)−0.0028 (6)0.0033 (5)−0.0115 (6)
C230.0301 (7)0.0339 (8)0.0200 (7)0.0016 (6)−0.0021 (6)0.0045 (6)
C240.0143 (6)0.0272 (7)0.0298 (7)−0.0045 (5)0.0002 (5)−0.0047 (6)
O1—C131.3772 (15)C11—C221.5317 (18)
O1—C11.3802 (14)C11—C231.5333 (19)
O2—C51.2263 (15)C11—C121.5370 (18)
O3—C91.2246 (15)C12—C131.4922 (17)
O4—C161.3714 (15)C12—H12A0.9700
O4—C241.4272 (17)C12—H12B0.9700
O5—C171.3591 (15)C14—C191.3922 (18)
O5—H14O0.86 (2)C14—C151.4001 (16)
C1—C61.3427 (17)C15—C161.3886 (17)
C1—C21.4924 (17)C15—H15A0.9300
C2—C31.5372 (18)C16—C171.4007 (18)
C2—H2A0.9700C17—C181.3867 (18)
C2—H2B0.9700C18—C191.3877 (18)
C3—C211.5301 (19)C18—H18A0.9300
C3—C201.5329 (19)C19—H19A0.9300
C3—C41.5350 (18)C20—H20A0.9600
C4—C51.5106 (19)C20—H20B0.9600
C4—H4A0.9700C20—H20C0.9600
C4—H4B0.9700C21—H21A0.9600
C5—C61.4730 (17)C21—H21B0.9600
C6—C71.5140 (17)C21—H21C0.9600
C7—C81.5108 (17)C22—H22A0.9600
C7—C141.5278 (16)C22—H22B0.9600
C7—H7A0.9800C22—H22C0.9600
C8—C131.3454 (16)C23—H23A0.9600
C8—C91.4706 (17)C23—H23B0.9600
C9—C101.5143 (18)C23—H23C0.9600
C10—C111.5317 (18)C24—H24A0.9600
C10—H10A0.9700C24—H24B0.9600
C10—H10B0.9700C24—H24C0.9600
C13—O1—C1117.88 (9)C11—C12—H12A109.1
C16—O4—C24117.15 (10)C13—C12—H12B109.1
C17—O5—H14O110.3 (15)C11—C12—H12B109.1
C6—C1—O1122.11 (11)H12A—C12—H12B107.8
C6—C1—C2126.34 (11)C8—C13—O1122.80 (11)
O1—C1—C2111.55 (10)C8—C13—C12125.88 (11)
C1—C2—C3111.36 (10)O1—C13—C12111.32 (10)
C1—C2—H2A109.4C19—C14—C15118.86 (11)
C3—C2—H2A109.4C19—C14—C7119.92 (10)
C1—C2—H2B109.4C15—C14—C7120.94 (11)
C3—C2—H2B109.4C16—C15—C14120.35 (12)
H2A—C2—H2B108.0C16—C15—H15A119.8
C21—C3—C20109.88 (12)C14—C15—H15A119.8
C21—C3—C4109.24 (11)O4—C16—C15125.52 (12)
C20—C3—C4110.30 (11)O4—C16—C17114.24 (11)
C21—C3—C2109.31 (11)C15—C16—C17120.23 (11)
C20—C3—C2110.83 (11)O5—C17—C18118.62 (12)
C4—C3—C2107.22 (10)O5—C17—C16122.09 (11)
C5—C4—C3113.79 (11)C18—C17—C16119.28 (11)
C5—C4—H4A108.8C17—C18—C19120.37 (12)
C3—C4—H4A108.8C17—C18—H18A119.8
C5—C4—H4B108.8C19—C18—H18A119.8
C3—C4—H4B108.8C18—C19—C14120.78 (12)
H4A—C4—H4B107.7C18—C19—H19A119.6
O2—C5—C6120.71 (12)C14—C19—H19A119.6
O2—C5—C4121.91 (12)C3—C20—H20A109.5
C6—C5—C4117.36 (11)C3—C20—H20B109.5
C1—C6—C5118.29 (11)H20A—C20—H20B109.5
C1—C6—C7122.20 (11)C3—C20—H20C109.5
C5—C6—C7119.31 (10)H20A—C20—H20C109.5
C8—C7—C6108.21 (10)H20B—C20—H20C109.5
C8—C7—C14112.65 (10)C3—C21—H21A109.5
C6—C7—C14107.84 (10)C3—C21—H21B109.5
C8—C7—H7A109.4H21A—C21—H21B109.5
C6—C7—H7A109.4C3—C21—H21C109.5
C14—C7—H7A109.4H21A—C21—H21C109.5
C13—C8—C9118.22 (11)H21B—C21—H21C109.5
C13—C8—C7121.72 (11)C11—C22—H22A109.5
C9—C8—C7120.07 (10)C11—C22—H22B109.5
O3—C9—C8121.30 (12)H22A—C22—H22B109.5
O3—C9—C10120.51 (12)C11—C22—H22C109.5
C8—C9—C10118.14 (11)H22A—C22—H22C109.5
C9—C10—C11114.09 (11)H22B—C22—H22C109.5
C9—C10—H10A108.7C11—C23—H23A109.5
C11—C10—H10A108.7C11—C23—H23B109.5
C9—C10—H10B108.7H23A—C23—H23B109.5
C11—C10—H10B108.7C11—C23—H23C109.5
H10A—C10—H10B107.6H23A—C23—H23C109.5
C22—C11—C10110.04 (11)H23B—C23—H23C109.5
C22—C11—C23109.54 (12)O4—C24—H24A109.5
C10—C11—C23109.87 (11)O4—C24—H24B109.5
C22—C11—C12108.88 (10)H24A—C24—H24B109.5
C10—C11—C12107.80 (11)O4—C24—H24C109.5
C23—C11—C12110.68 (11)H24A—C24—H24C109.5
C13—C12—C11112.46 (10)H24B—C24—H24C109.5
C13—C12—H12A109.1
C13—O1—C1—C610.47 (17)C9—C10—C11—C22−172.25 (11)
C13—O1—C1—C2−169.61 (10)C9—C10—C11—C2367.06 (14)
C6—C1—C2—C322.80 (18)C9—C10—C11—C12−53.64 (14)
O1—C1—C2—C3−157.11 (10)C22—C11—C12—C13167.54 (12)
C1—C2—C3—C21−168.27 (11)C10—C11—C12—C1348.19 (14)
C1—C2—C3—C2070.47 (13)C23—C11—C12—C13−71.99 (14)
C1—C2—C3—C4−49.96 (14)C9—C8—C13—O1174.91 (11)
C21—C3—C4—C5174.64 (12)C7—C8—C13—O1−5.31 (18)
C20—C3—C4—C5−64.49 (15)C9—C8—C13—C12−4.82 (19)
C2—C3—C4—C556.29 (14)C7—C8—C13—C12174.95 (12)
C3—C4—C5—O2148.98 (12)C1—O1—C13—C8−12.05 (17)
C3—C4—C5—C6−32.87 (16)C1—O1—C13—C12167.72 (10)
O1—C1—C6—C5−176.84 (10)C11—C12—C13—C8−21.12 (18)
C2—C1—C6—C53.25 (18)C11—C12—C13—O1159.11 (10)
O1—C1—C6—C78.37 (18)C8—C7—C14—C1952.88 (15)
C2—C1—C6—C7−171.54 (11)C6—C7—C14—C19−66.46 (15)
O2—C5—C6—C1179.82 (11)C8—C7—C14—C15−133.24 (12)
C4—C5—C6—C11.65 (17)C6—C7—C14—C15107.43 (13)
O2—C5—C6—C7−5.23 (17)C19—C14—C15—C162.08 (19)
C4—C5—C6—C7176.59 (11)C7—C14—C15—C16−171.87 (11)
C1—C6—C7—C8−22.67 (15)C24—O4—C16—C1525.08 (18)
C5—C6—C7—C8162.59 (10)C24—O4—C16—C17−156.10 (12)
C1—C6—C7—C1499.45 (13)C14—C15—C16—O4179.50 (12)
C5—C6—C7—C14−75.29 (13)C14—C15—C16—C170.74 (19)
C6—C7—C8—C1321.08 (15)O4—C16—C17—O5−1.71 (18)
C14—C7—C8—C13−98.04 (13)C15—C16—C17—O5177.18 (12)
C6—C7—C8—C9−159.15 (11)O4—C16—C17—C18177.85 (12)
C14—C7—C8—C981.73 (14)C15—C16—C17—C18−3.26 (19)
C13—C8—C9—O3−177.09 (12)O5—C17—C18—C19−177.48 (12)
C7—C8—C9—O33.13 (18)C16—C17—C18—C193.0 (2)
C13—C8—C9—C100.12 (17)C17—C18—C19—C14−0.1 (2)
C7—C8—C9—C10−179.65 (11)C15—C14—C19—C18−2.4 (2)
O3—C9—C10—C11−152.16 (12)C7—C14—C19—C18171.61 (12)
C8—C9—C10—C1130.60 (16)
D—H···AD—HH···AD···AD—H···A
O5—H14O···O3i0.86 (2)1.95 (2)2.7319 (13)151 (2)
C2—H2A···O2ii0.972.553.5003 (16)165
C20—H20C···O2iii0.962.583.4646 (17)154
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O5—H14O⋯O3i0.86 (2)1.95 (2)2.7319 (13)151 (2)
C2—H2A⋯O2ii0.972.553.5003 (16)165
C20—H20C⋯O2iii0.962.583.4646 (17)154

Symmetry codes: (i) ; (ii) ; (iii) .

  4 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  A facile regioselective synthesis of novel spiro-thioxanthene and spiro-xanthene-9',2-[1,3,4]thiadiazole derivatives as potential analgesic and anti-inflammatory agents.

Authors:  H N Hafez; M I Hegab; I S Ahmed-Farag; A B A el-Gazzar
Journal:  Bioorg Med Chem Lett       Date:  2008-07-15       Impact factor: 2.823

3.  An efficient synthesis of 1,8-dioxo-octahydro-xanthene derivatives promoted by a room temperature ionic liquid at ambient conditions under ultrasound irradiation.

Authors:  K Venkatesan; Suresh S Pujari; R J Lahoti; K V Srinivasan
Journal:  Ultrason Sonochem       Date:  2007-06-14       Impact factor: 7.491

4.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  4 in total

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