Literature DB >> 21587728

Diaqua-bis-(4-carb-oxy-2-propyl-1H-imidazole-5-carboxyl-ato-κN,O)zinc(II) N,N-dimethyl-formamide disolvate.

Cheng-Jun Hao1, Xiao-Jun Zhao.   

Abstract

In the crystal structure of the title compound, [Zn(C(8)H(9)N(2)O(4))(2)(H(2)O)(2)]·2C(3)H(7)NO, the Zn(II) atom is coordinated by two N,O-bidentate 2-propyl-1H-imidazole-4,5-dicarboxyl-ate anions and two water mol-ecules in a distorted octa-hedral environment. The asymmetric unit consists of one Zn(II) atom located on a center of inversion as well as one anion, one water mol-ecule and one additional dimethyl-formamide mol-ecule that occupy general positions. Between the carboxyl and the carboxyl-ate group an intra-molecular hydrogen bond is found in which the hydroxy H atom is disordered. Disorder is also found for the H atoms of one of the three methyl groups. In the crystal structure, additional inter-molecular N-H⋯O and O-H⋯O hydrogen bonding is found.

Entities:  

Year:  2010        PMID: 21587728      PMCID: PMC3006990          DOI: 10.1107/S1600536810022282

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For imidazole-4,5-dicarb­oxy­lic complexes, see: Maji et al. (2005 ▶); Yang & Zhang (2006 ▶).

Experimental

Crystal data

[Zn(C8H9N2O4)2(H2O)2]·2C3H7NO M = 641.94 Triclinic, a = 7.3619 (9) Å b = 9.3194 (13) Å c = 11.2301 (15) Å α = 76.281 (1)° β = 87.621 (2)° γ = 68.888 (1)° V = 697.44 (16) Å3 Z = 1 Mo Kα radiation μ = 0.95 mm−1 T = 298 K 0.43 × 0.28 × 0.25 mm

Data collection

Bruker SMART 1000 CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2007 ▶) T min = 0.685, T max = 0.797 3640 measured reflections 2425 independent reflections 2205 reflections with I > 2σ(I) R int = 0.015

Refinement

R[F 2 > 2σ(F 2)] = 0.029 wR(F 2) = 0.076 S = 1.06 2425 reflections 179 parameters H-atom parameters constrained Δρmax = 0.26 e Å−3 Δρmin = −0.33 e Å−3 Data collection: SMART (Bruker, 2007 ▶); cell refinement: SAINT (Bruker, 2007 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536810022282/nc2185sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810022282/nc2185Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Zn(C8H9N2O4)2(H2O)2]·2C3H7NOZ = 1
Mr = 641.94F(000) = 336
Triclinic, P1Dx = 1.528 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 7.3619 (9) ÅCell parameters from 2051 reflections
b = 9.3194 (13) Åθ = 2.5–23.9°
c = 11.2301 (15) ŵ = 0.95 mm1
α = 76.281 (1)°T = 298 K
β = 87.621 (2)°Block, colorless
γ = 68.888 (1)°0.43 × 0.28 × 0.25 mm
V = 697.44 (16) Å3
Bruker SMART 1000 CCD area-detector diffractometer2425 independent reflections
Radiation source: fine-focus sealed tube2205 reflections with I > 2σ(I)
graphiteRint = 0.015
φ and ω scansθmax = 25.0°, θmin = 1.9°
Absorption correction: multi-scan (SADABS; Bruker, 2007)h = −8→8
Tmin = 0.685, Tmax = 0.797k = −10→11
3640 measured reflectionsl = −13→10
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.029H-atom parameters constrained
wR(F2) = 0.076w = 1/[σ2(Fo2) + (0.0389P)2 + 0.2536P] where P = (Fo2 + 2Fc2)/3
S = 1.06(Δ/σ)max < 0.001
2425 reflectionsΔρmax = 0.26 e Å3
179 parametersΔρmin = −0.33 e Å3
0 restraintsExtinction correction: SHELXTL (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.067 (4)
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
Zn10.50000.50000.50000.02921 (14)
N10.6351 (2)0.25671 (17)0.54820 (14)0.0248 (3)
N20.8023 (2)0.00172 (18)0.60587 (15)0.0287 (4)
H1N10.8740−0.08850.65060.034*
N30.1215 (3)0.4911 (2)0.86419 (18)0.0419 (4)
O10.4380 (2)0.43510 (15)0.33379 (12)0.0342 (3)
O20.49486 (10)0.22669 (8)0.25454 (6)0.0384 (4)
H1O20.55910.13150.27270.058*0.60
O30.68632 (10)−0.06116 (8)0.31714 (6)0.0423 (4)
H1O30.61320.03110.29200.063*0.40
O40.86310 (10)−0.23869 (8)0.47855 (6)0.0412 (4)
O50.03879 (10)0.74901 (8)0.76828 (6)0.0575 (5)
O60.77394 (10)0.51222 (8)0.43114 (6)0.0381 (4)
H1O60.79380.58870.44350.057*
H2O60.86310.43100.46470.057*
C10.5133 (3)0.2910 (2)0.34026 (17)0.0275 (4)
C20.6268 (3)0.1875 (2)0.45418 (17)0.0240 (4)
C30.7305 (3)0.0277 (2)0.48902 (17)0.0251 (4)
C40.7647 (3)−0.1017 (2)0.42490 (19)0.0306 (4)
C50.7424 (3)0.1403 (2)0.63940 (17)0.0272 (4)
C60.7850 (3)0.1559 (2)0.76285 (18)0.0357 (5)
H6C0.74350.26750.76200.043*
H6D0.92470.10930.78070.043*
C70.6844 (4)0.0768 (3)0.8641 (2)0.0553 (7)
H7A0.54560.11870.84320.066*
H7B0.7320−0.03580.86790.066*
C80.7156 (4)0.0996 (3)0.9888 (2)0.0571 (7)
H8B0.70540.20710.98150.086*0.60
H8C0.84290.02891.02260.086*0.60
H8A0.61860.07751.04200.086*0.60
H8E0.83560.11770.99210.086*0.40
H8D0.72200.00651.05040.086*0.40
H8F0.60940.18931.00370.086*0.40
C90.0112 (3)0.6238 (3)0.7883 (2)0.0442 (6)
H9−0.09470.62180.74730.053*
C100.2943 (4)0.4853 (3)0.9244 (3)0.0616 (7)
H10A0.40700.43500.88250.092*
H10B0.30510.42611.00800.092*
H10C0.28580.59100.92260.092*
C110.0897 (6)0.3442 (3)0.8741 (3)0.0793 (10)
H11A−0.03200.36590.83250.119*
H11B0.08630.29470.95900.119*
H11C0.19390.27470.83720.119*
U11U22U33U12U13U23
Zn10.0353 (2)0.01589 (19)0.0328 (2)−0.00545 (13)−0.00206 (13)−0.00454 (13)
N10.0288 (8)0.0178 (8)0.0263 (8)−0.0071 (6)−0.0014 (6)−0.0037 (6)
N20.0310 (8)0.0161 (8)0.0325 (9)−0.0048 (7)−0.0042 (7)0.0012 (7)
N30.0475 (11)0.0272 (10)0.0455 (11)−0.0102 (8)0.0006 (9)−0.0037 (8)
O10.0437 (8)0.0194 (7)0.0312 (8)−0.0033 (6)−0.0080 (6)−0.0020 (6)
O20.0494 (9)0.0298 (8)0.0317 (8)−0.0069 (7)−0.0092 (6)−0.0090 (6)
O30.0549 (9)0.0284 (8)0.0421 (9)−0.0081 (7)−0.0025 (7)−0.0156 (7)
O40.0415 (8)0.0192 (7)0.0586 (10)−0.0040 (6)−0.0032 (7)−0.0113 (7)
O50.0633 (11)0.0276 (9)0.0651 (12)−0.0046 (8)−0.0201 (9)0.0046 (8)
O60.0358 (8)0.0230 (7)0.0548 (10)−0.0097 (6)0.0027 (7)−0.0097 (7)
C10.0283 (10)0.0239 (10)0.0281 (10)−0.0075 (8)0.0003 (8)−0.0050 (8)
C20.0248 (9)0.0205 (9)0.0264 (10)−0.0081 (7)0.0016 (7)−0.0051 (7)
C30.0245 (9)0.0199 (9)0.0300 (10)−0.0077 (7)0.0017 (7)−0.0045 (8)
C40.0285 (10)0.0229 (10)0.0410 (12)−0.0089 (8)0.0050 (9)−0.0100 (9)
C50.0291 (10)0.0199 (9)0.0296 (10)−0.0079 (8)−0.0023 (8)−0.0011 (7)
C60.0445 (12)0.0277 (11)0.0320 (11)−0.0117 (9)−0.0089 (9)−0.0020 (8)
C70.0699 (17)0.0634 (17)0.0420 (14)−0.0321 (14)0.0123 (12)−0.0188 (12)
C80.0653 (17)0.0591 (17)0.0402 (14)−0.0146 (14)0.0039 (12)−0.0123 (12)
C90.0379 (12)0.0437 (14)0.0437 (13)−0.0057 (10)−0.0053 (10)−0.0099 (11)
C100.0469 (14)0.0528 (16)0.0639 (18)−0.0051 (12)−0.0138 (13)0.0076 (13)
C110.113 (3)0.0437 (17)0.089 (2)−0.0384 (18)0.014 (2)−0.0156 (16)
Zn1—N12.0643 (15)C1—C21.479 (3)
Zn1—N1i2.0643 (15)C2—C31.372 (3)
Zn1—O6i2.1616C3—C41.488 (3)
Zn1—O62.1616C5—C61.485 (3)
Zn1—O12.2053 (14)C6—C71.520 (3)
Zn1—O1i2.2053 (14)C6—H6C0.9700
N1—C51.331 (2)C6—H6D0.9700
N1—C21.375 (2)C7—C81.505 (3)
N2—C51.346 (2)C7—H7A0.9700
N2—C31.369 (2)C7—H7B0.9700
N2—H1N10.8600C8—H8B0.9600
N3—C91.322 (3)C8—H8C0.9600
N3—C101.443 (3)C8—H8A0.9600
N3—C111.448 (3)C8—H8E0.9602
O1—C11.240 (2)C8—H8D0.9601
O2—C11.284 (2)C8—H8F0.9602
O2—H1O20.8200C9—H90.9300
O3—C41.274 (2)C10—H10A0.9600
O3—H1O30.8200C10—H10B0.9600
O4—C41.234 (2)C10—H10C0.9600
O5—C91.223 (3)C11—H11A0.9600
O6—H1O60.8201C11—H11B0.9600
O6—H2O60.8200C11—H11C0.9600
N1—Zn1—N1i180.0O3—C4—C3116.34 (16)
N1—Zn1—O6i92.14 (5)N1—C5—N2110.03 (17)
N1i—Zn1—O6i87.86 (5)N1—C5—C6126.12 (17)
N1—Zn1—O687.86 (5)N2—C5—C6123.80 (17)
N1i—Zn1—O692.14 (5)C5—C6—C7113.04 (18)
O6i—Zn1—O6180.0C5—C6—H6C109.0
N1—Zn1—O178.58 (5)C7—C6—H6C109.0
N1i—Zn1—O1101.43 (5)C5—C6—H6D109.0
O6i—Zn1—O188.98 (4)C7—C6—H6D109.0
O6—Zn1—O191.02 (4)H6C—C6—H6D107.8
N1—Zn1—O1i101.43 (5)C8—C7—C6113.9 (2)
N1i—Zn1—O1i78.57 (5)C8—C7—H7A108.8
O6i—Zn1—O1i91.02 (4)C6—C7—H7A108.8
O6—Zn1—O1i88.98 (4)C8—C7—H7B108.8
O1—Zn1—O1i180.0C6—C7—H7B108.8
C5—N1—C2106.21 (15)H7A—C7—H7B107.7
C5—N1—Zn1141.02 (13)C7—C8—H8B109.5
C2—N1—Zn1112.56 (12)C7—C8—H8C109.5
C5—N2—C3108.91 (16)C7—C8—H8A109.5
C5—N2—H1N1125.5C7—C8—H8E109.5
C3—N2—H1N1125.5C7—C8—H8D109.5
C9—N3—C10119.9 (2)H8E—C8—H8D109.5
C9—N3—C11121.1 (2)C7—C8—H8F109.5
C10—N3—C11118.4 (2)H8E—C8—H8F109.5
C1—O1—Zn1112.88 (12)H8D—C8—H8F109.5
C1—O2—H1O2110.3O5—C9—N3124.6 (2)
C4—O3—H1O3117.8O5—C9—H9117.7
Zn1—O6—H1O6112.3N3—C9—H9117.7
Zn1—O6—H2O6109.2N3—C10—H10A109.5
H1O6—O6—H2O6108.9N3—C10—H10B109.5
O1—C1—O2123.54 (16)H10A—C10—H10B109.5
O1—C1—C2118.08 (17)N3—C10—H10C109.5
O2—C1—C2118.37 (16)H10A—C10—H10C109.5
C3—C2—N1109.67 (16)H10B—C10—H10C109.5
C3—C2—C1132.62 (17)N3—C11—H11A109.5
N1—C2—C1117.71 (16)N3—C11—H11B109.5
N2—C3—C2105.17 (16)H11A—C11—H11B109.5
N2—C3—C4122.91 (17)N3—C11—H11C109.5
C2—C3—C4131.90 (18)H11A—C11—H11C109.5
O4—C4—O3124.73 (17)H11B—C11—H11C109.5
O4—C4—C3118.93 (18)
N1i—Zn1—N1—C523 (100)O1—C1—C2—N12.6 (3)
O6i—Zn1—N1—C5−94.0 (2)O2—C1—C2—N1−175.99 (15)
O6—Zn1—N1—C586.0 (2)C5—N2—C3—C20.5 (2)
O1—Zn1—N1—C5177.5 (2)C5—N2—C3—C4−178.27 (17)
O1i—Zn1—N1—C5−2.5 (2)N1—C2—C3—N2−0.2 (2)
N1i—Zn1—N1—C2−151 (100)C1—C2—C3—N2−179.58 (19)
O6i—Zn1—N1—C292.28 (12)N1—C2—C3—C4178.35 (18)
O6—Zn1—N1—C2−87.72 (12)C1—C2—C3—C4−1.0 (4)
O1—Zn1—N1—C23.76 (12)N2—C3—C4—O4−0.5 (3)
O1i—Zn1—N1—C2−176.24 (12)C2—C3—C4—O4−178.83 (17)
N1—Zn1—O1—C1−2.53 (13)N2—C3—C4—O3178.75 (15)
N1i—Zn1—O1—C1177.47 (13)C2—C3—C4—O30.4 (3)
O6i—Zn1—O1—C1−94.92 (13)C2—N1—C5—N20.4 (2)
O6—Zn1—O1—C185.08 (13)Zn1—N1—C5—N2−173.60 (14)
O1i—Zn1—O1—C1168 (100)C2—N1—C5—C6−177.05 (18)
Zn1—O1—C1—O2179.33 (13)Zn1—N1—C5—C68.9 (3)
Zn1—O1—C1—C20.8 (2)C3—N2—C5—N1−0.6 (2)
C5—N1—C2—C3−0.1 (2)C3—N2—C5—C6176.97 (17)
Zn1—N1—C2—C3175.82 (12)N1—C5—C6—C7110.5 (2)
C5—N1—C2—C1179.37 (16)N2—C5—C6—C7−66.6 (3)
Zn1—N1—C2—C1−4.7 (2)C5—C6—C7—C8−176.5 (2)
O1—C1—C2—C3−178.04 (19)C10—N3—C9—O5−3.7 (4)
O2—C1—C2—C33.3 (3)C11—N3—C9—O5−174.1 (2)
D—H···AD—HH···AD···AD—H···A
O6—H2O6···O4ii0.822.162.9594 (14)167
O6—H1O6···O4iii0.821.982.796175
O3—H1O3···O20.821.672.478169
O2—H1O2···O30.821.662.478177
N2—H1N1···O5iv0.861.842.6789 (17)166
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O6—H2O6⋯O4i0.822.162.9594 (14)167
O6—H1O6⋯O4ii0.821.982.796175
O3—H1O3⋯O20.821.672.478169
O2—H1O2⋯O30.821.662.478177
N2—H1N1⋯O5iii0.861.842.6789 (17)166

Symmetry codes: (i) ; (ii) ; (iii) .

  3 in total

1.  Porous lanthanide-organic framework with zeolite-like topology.

Authors:  Tapas Kumar Maji; Golam Mostafa; Ho-Chol Chang; Susumu Kitagawa
Journal:  Chem Commun (Camb)       Date:  2005-03-24       Impact factor: 6.222

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  Diversity of coordination architecture of metal 4,5-dicarboxyimidazole.

Authors:  Rui-Qin Fang; Xian-Ming Zhang
Journal:  Inorg Chem       Date:  2006-06-12       Impact factor: 5.165

  3 in total

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