Literature DB >> 21587718

catena-Poly[[aqua-(imidazole)-cadmium(II)]-μ(3)-benzene-1,3-dicarboxyl-ato].

Zhengfang Zeng, Hongyan Xu.   

Abstract

In the title compound, [Cd(C(8)H(4)O(4))(C(3)H(4)N(2))(H(2)O)](n), the Cd(II) ion is seven-coordinated by five O atoms from three crystallographically independent benzene-1,3-carboxylate ligands, one N atom from the imidazole ligand and one coordinated water mol-ecule. Neighboring Cd(II) ions are bridged by the benzene-1,3-dicarboxyl-ate ligands, forming a zigzag polymeric chain structure. These chains are further extended into a three-dimensional supra-molecular structure through O-H⋯O and N-H⋯O hydrogen bonds.

Entities:  

Year:  2010        PMID: 21587718      PMCID: PMC3006711          DOI: 10.1107/S1600536810022117

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the synthesis, see: Yaghi et al. (1998 ▶). For related structures, see: Ma et al. (2008 ▶); Wang et al. (2008 ▶).

Experimental

Crystal data

[Cd(C8H4O4)(C3H4N2)(H2O)] M = 362.61 Triclinic, a = 8.2616 (8) Å b = 8.3138 (8) Å c = 10.235 (1) Å α = 67.017 (2)° β = 68.176 (2)° γ = 81.054 (2)° V = 600.76 (10) Å3 Z = 2 Mo Kα radiation μ = 1.84 mm−1 T = 293 K 0.27 × 0.18 × 0.06 mm

Data collection

Bruker APEX CCD diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.536, T max = 1.000 3166 measured reflections 2086 independent reflections 2049 reflections with I > 2σ(I) R int = 0.019

Refinement

R[F 2 > 2σ(F 2)] = 0.028 wR(F 2) = 0.072 S = 1.15 2086 reflections 184 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.41 e Å−3 Δρmin = −0.79 e Å−3 Data collection: SMART (Siemens, 1996 ▶); cell refinement: SAINT (Siemens, 1996 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536810022117/lx2148sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810022117/lx2148Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Cd(C8H4O4)(C3H4N2)(H2O)]Z = 2
Mr = 362.61F(000) = 356
Triclinic, P1Dx = 2.005 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 8.2616 (8) ÅCell parameters from 3126 reflections
b = 8.3138 (8) Åθ = 3.3–27.5°
c = 10.235 (1) ŵ = 1.84 mm1
α = 67.017 (2)°T = 293 K
β = 68.176 (2)°Block, yellow
γ = 81.054 (2)°0.27 × 0.18 × 0.06 mm
V = 600.76 (10) Å3
Bruker APEX CCD diffractometer2086 independent reflections
Radiation source: fine-focus sealed tube2049 reflections with I > 2σ(I)
graphiteRint = 0.019
Detector resolution: 10 pixels mm-1θmax = 25.0°, θmin = 2.3°
ω scansh = −9→9
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)k = −9→4
Tmin = 0.536, Tmax = 1.000l = −12→11
3166 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.028Hydrogen site location: difference Fourier map
wR(F2) = 0.072H atoms treated by a mixture of independent and constrained refinement
S = 1.15w = 1/[σ2(Fo2) + (0.0315P)2 + 1.1125P] where P = (Fo2 + 2Fc2)/3
2086 reflections(Δ/σ)max < 0.001
184 parametersΔρmax = 0.41 e Å3
0 restraintsΔρmin = −0.79 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cd10.08672 (3)0.32297 (3)0.90289 (3)0.02898 (11)
O1−0.0532 (4)0.6070 (4)0.8593 (3)0.0337 (6)
O20.0672 (4)0.8334 (4)0.8475 (3)0.0382 (6)
O30.1082 (4)0.7617 (4)0.1628 (3)0.0347 (6)
O4−0.1232 (4)0.6718 (4)0.3685 (3)0.0405 (7)
O50.2389 (4)0.0533 (4)0.9029 (4)0.0414 (7)
H5A0.209 (10)0.017 (10)0.849 (9)0.10 (2)*
H5B0.211 (10)−0.024 (10)0.994 (9)0.10 (3)*
N10.3422 (4)0.4507 (4)0.8114 (4)0.0340 (7)
N20.5999 (5)0.5524 (5)0.6516 (4)0.0453 (9)
H20.687 (9)0.587 (9)0.570 (8)0.08 (2)*
C10.0393 (5)0.7429 (5)0.7840 (4)0.0272 (7)
C20.1174 (5)0.7962 (5)0.6165 (4)0.0255 (7)
C30.2660 (5)0.8979 (5)0.5366 (4)0.0325 (8)
H30.31530.93720.58680.039*
C40.3406 (5)0.9406 (6)0.3814 (5)0.0398 (9)
H40.44281.00480.32840.048*
C50.2642 (5)0.8885 (5)0.3047 (4)0.0333 (8)
H50.31450.91840.20060.040*
C80.0251 (5)0.7384 (5)0.3016 (4)0.0293 (8)
C70.0420 (4)0.7439 (4)0.5394 (4)0.0248 (7)
H7−0.05750.67570.59300.030*
C110.4652 (6)0.4570 (6)0.6844 (5)0.0425 (10)
H110.45920.40100.62350.051*
C100.4032 (6)0.5481 (6)0.8641 (5)0.0436 (10)
H100.34410.56880.95320.052*
C90.5632 (6)0.6097 (7)0.7663 (6)0.0488 (11)
H90.63380.67790.77620.059*
C60.1121 (5)0.7914 (5)0.3837 (4)0.0261 (7)
U11U22U33U12U13U23
Cd10.03179 (17)0.03293 (17)0.02429 (16)−0.01047 (11)−0.00754 (11)−0.01069 (12)
O10.0381 (15)0.0359 (15)0.0243 (13)−0.0070 (12)−0.0089 (11)−0.0074 (11)
O20.0528 (17)0.0447 (16)0.0260 (13)−0.0095 (13)−0.0144 (12)−0.0175 (12)
O30.0442 (15)0.0420 (15)0.0236 (13)−0.0069 (12)−0.0114 (11)−0.0154 (11)
O40.0422 (16)0.0530 (18)0.0302 (14)−0.0195 (13)−0.0118 (12)−0.0125 (13)
O50.0440 (17)0.0385 (16)0.0405 (17)−0.0083 (13)−0.0105 (14)−0.0137 (15)
N10.0310 (16)0.0374 (18)0.0328 (17)−0.0080 (13)−0.0085 (13)−0.0114 (14)
N20.0336 (19)0.055 (2)0.039 (2)−0.0110 (17)−0.0046 (16)−0.0120 (18)
C10.0274 (18)0.0310 (19)0.0236 (17)−0.0004 (14)−0.0103 (14)−0.0091 (15)
C20.0289 (18)0.0254 (17)0.0223 (17)−0.0011 (14)−0.0100 (14)−0.0073 (14)
C30.036 (2)0.042 (2)0.0276 (19)−0.0122 (16)−0.0133 (16)−0.0137 (16)
C40.033 (2)0.053 (3)0.032 (2)−0.0214 (18)−0.0048 (16)−0.0118 (18)
C50.035 (2)0.042 (2)0.0202 (17)−0.0076 (16)−0.0060 (15)−0.0092 (16)
C80.038 (2)0.0273 (18)0.0267 (18)−0.0028 (15)−0.0152 (16)−0.0089 (15)
C70.0250 (17)0.0278 (17)0.0220 (17)−0.0045 (13)−0.0084 (13)−0.0075 (14)
C110.040 (2)0.050 (3)0.040 (2)−0.0124 (19)−0.0100 (18)−0.017 (2)
C100.036 (2)0.057 (3)0.042 (2)−0.0128 (19)−0.0100 (18)−0.021 (2)
C90.040 (2)0.057 (3)0.054 (3)−0.017 (2)−0.015 (2)−0.020 (2)
C60.0285 (18)0.0281 (18)0.0248 (17)−0.0013 (14)−0.0113 (14)−0.0105 (14)
Cd1—N12.216 (3)N2—H20.85 (7)
Cd1—O3i2.251 (3)C1—C21.492 (5)
Cd1—O2ii2.311 (3)C2—C71.384 (5)
Cd1—O52.394 (3)C2—C31.388 (5)
Cd1—O12.413 (3)C3—C41.389 (5)
Cd1—O1ii2.626 (3)C3—H30.9300
Cd1—O4i2.663 (3)C4—C51.387 (6)
O1—C11.266 (5)C4—H40.9300
O2—C11.260 (4)C5—C61.391 (5)
O3—C81.276 (4)C5—H50.9300
O4—C81.252 (5)C8—C61.501 (5)
O5—H5A0.84 (8)C7—C61.387 (5)
O5—H5B0.87 (8)C7—H70.9300
N1—C111.306 (5)C11—H110.9300
N1—C101.368 (5)C10—C91.356 (6)
N2—C111.330 (6)C10—H100.9300
N2—C91.351 (6)C9—H90.9300
N1—Cd1—O3i143.34 (11)C9—N2—H2124 (4)
N1—Cd1—O2ii127.43 (11)O2—C1—O1121.5 (3)
O3i—Cd1—O2ii88.49 (10)O2—C1—C2119.4 (3)
N1—Cd1—O588.63 (11)O1—C1—C2119.1 (3)
O3i—Cd1—O587.33 (11)C7—C2—C3119.4 (3)
O2ii—Cd1—O585.20 (11)C7—C2—C1120.0 (3)
N1—Cd1—O189.20 (11)C3—C2—C1120.5 (3)
O3i—Cd1—O189.03 (10)C2—C3—C4119.7 (3)
O2ii—Cd1—O1103.25 (10)C2—C3—H3120.2
O5—Cd1—O1170.71 (11)C4—C3—H3120.2
N1—Cd1—O1ii83.08 (10)C5—C4—C3120.6 (4)
O3i—Cd1—O1ii131.61 (9)C5—C4—H4119.7
O2ii—Cd1—O1ii52.58 (9)C3—C4—H4119.7
O5—Cd1—O1ii112.79 (11)C4—C5—C6119.8 (3)
O1—Cd1—O1ii75.89 (9)C4—C5—H5120.1
N1—Cd1—O4i91.00 (10)C6—C5—H5120.1
O3i—Cd1—O4i52.54 (9)O4—C8—O3121.5 (3)
O2ii—Cd1—O4i137.72 (9)O4—C8—C6120.7 (3)
O5—Cd1—O4i78.09 (11)O3—C8—C6117.8 (3)
O1—Cd1—O4i92.92 (9)C2—C7—C6121.2 (3)
O1ii—Cd1—O4i167.35 (9)C2—C7—H7119.4
C1—O1—Cd1119.5 (2)C6—C7—H7119.4
C1—O1—Cd1ii85.5 (2)N1—C11—N2112.7 (4)
Cd1—O1—Cd1ii104.11 (9)N1—C11—H11123.7
C1—O2—Cd1ii100.4 (2)N2—C11—H11123.7
C8—O3—Cd1i102.2 (2)C9—C10—N1109.4 (4)
Cd1—O5—H5A108 (5)C9—C10—H10125.3
Cd1—O5—H5B110 (5)N1—C10—H10125.3
H5A—O5—H5B109 (7)N2—C9—C10106.5 (4)
C11—N1—C10104.7 (3)N2—C9—H9126.7
C11—N1—Cd1125.3 (3)C10—C9—H9126.7
C10—N1—Cd1129.8 (3)C7—C6—C5119.1 (3)
C11—N2—C9106.7 (4)C7—C6—C8120.4 (3)
C11—N2—H2129 (4)C5—C6—C8120.4 (3)
N1—Cd1—O1—C19.8 (3)O2—C1—C2—C7−156.1 (3)
O3i—Cd1—O1—C1−133.6 (3)O1—C1—C2—C724.1 (5)
O2ii—Cd1—O1—C1138.2 (3)O2—C1—C2—C324.1 (5)
O1ii—Cd1—O1—C192.8 (3)O1—C1—C2—C3−155.6 (4)
O4i—Cd1—O1—C1−81.2 (3)C7—C2—C3—C4−2.3 (6)
N1—Cd1—O1—Cd1ii−83.06 (11)C1—C2—C3—C4177.5 (4)
O3i—Cd1—O1—Cd1ii133.56 (10)C2—C3—C4—C52.6 (7)
O2ii—Cd1—O1—Cd1ii45.34 (11)C3—C4—C5—C6−0.5 (7)
O1ii—Cd1—O1—Cd1ii0.0Cd1i—O3—C8—O44.2 (4)
O4i—Cd1—O1—Cd1ii−174.03 (9)Cd1i—O3—C8—C6−176.6 (3)
O3i—Cd1—N1—C11−24.3 (5)C3—C2—C7—C6−0.1 (5)
O2ii—Cd1—N1—C11142.2 (3)C1—C2—C7—C6−179.9 (3)
O5—Cd1—N1—C1159.3 (4)C10—N1—C11—N2−0.4 (5)
O1—Cd1—N1—C11−111.6 (4)Cd1—N1—C11—N2175.6 (3)
O1ii—Cd1—N1—C11172.5 (4)C9—N2—C11—N11.0 (6)
O4i—Cd1—N1—C11−18.7 (4)C11—N1—C10—C9−0.4 (5)
O3i—Cd1—N1—C10150.6 (3)Cd1—N1—C10—C9−176.1 (3)
O2ii—Cd1—N1—C10−42.9 (4)C11—N2—C9—C10−1.2 (5)
O5—Cd1—N1—C10−125.8 (4)N1—C10—C9—N20.9 (6)
O1—Cd1—N1—C1063.3 (4)C2—C7—C6—C52.1 (5)
O1ii—Cd1—N1—C10−12.6 (4)C2—C7—C6—C8−178.0 (3)
O4i—Cd1—N1—C10156.2 (4)C4—C5—C6—C7−1.8 (6)
Cd1ii—O2—C1—O10.1 (4)C4—C5—C6—C8178.3 (4)
Cd1ii—O2—C1—C2−179.6 (3)O4—C8—C6—C79.7 (5)
Cd1—O1—C1—O2−103.8 (4)O3—C8—C6—C7−169.4 (3)
Cd1ii—O1—C1—O2−0.1 (3)O4—C8—C6—C5−170.4 (4)
Cd1—O1—C1—C276.0 (4)O3—C8—C6—C510.4 (5)
Cd1ii—O1—C1—C2179.6 (3)
D—H···AD—HH···AD···AD—H···A
O5—H5A···O2iii0.84 (8)2.07 (8)2.809 (4)146 (7)
O5—H5B···O3iv0.87 (8)1.96 (8)2.786 (4)158 (7)
N2—H2···O4v0.85 (7)2.00 (7)2.854 (5)175 (6)
Table 1

Selected bond lengths (Å)

Cd1—N12.216 (3)
Cd1—O3i2.251 (3)
Cd1—O2ii2.311 (3)
Cd1—O52.394 (3)
Cd1—O12.413 (3)
Cd1—O1ii2.626 (3)
Cd1—O4i2.663 (3)

Symmetry codes: (i) ; (ii) .

Table 2

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O5—H5A⋯O2iii0.84 (8)2.07 (8)2.809 (4)146 (7)
O5—H5B⋯O3iv0.87 (8)1.96 (8)2.786 (4)158 (7)
N2—H2⋯O4v0.85 (7)2.00 (7)2.854 (5)175 (6)

Symmetry codes: (iii) ; (iv) ; (v) .

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