| Literature DB >> 21587718 |
Abstract
In the title compound, [Cd(C(8)H(4)O(4))(C(3)H(4)N(2))(H(2)O)](n), the Cd(II) ion is seven-coordinated by five O atoms from three crystallographically independent benzene-1,3-carboxylate ligands, one N atom from the imidazole ligand and one coordinated water mol-ecule. Neighboring Cd(II) ions are bridged by the benzene-1,3-dicarboxyl-ate ligands, forming a zigzag polymeric chain structure. These chains are further extended into a three-dimensional supra-molecular structure through O-H⋯O and N-H⋯O hydrogen bonds.Entities:
Year: 2010 PMID: 21587718 PMCID: PMC3006711 DOI: 10.1107/S1600536810022117
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| [Cd(C8H4O4)(C3H4N2)(H2O)] | |
| Triclinic, | |
| Hall symbol: -P 1 | Mo |
| Cell parameters from 3126 reflections | |
| θ = 3.3–27.5° | |
| µ = 1.84 mm−1 | |
| α = 67.017 (2)° | |
| β = 68.176 (2)° | Block, yellow |
| γ = 81.054 (2)° | 0.27 × 0.18 × 0.06 mm |
| Bruker APEX CCD diffractometer | 2086 independent reflections |
| Radiation source: fine-focus sealed tube | 2049 reflections with |
| graphite | |
| Detector resolution: 10 pixels mm-1 | θmax = 25.0°, θmin = 2.3° |
| ω scans | |
| Absorption correction: multi-scan ( | |
| 3166 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: difference Fourier map | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 2086 reflections | (Δ/σ)max < 0.001 |
| 184 parameters | Δρmax = 0.41 e Å−3 |
| 0 restraints | Δρmin = −0.79 e Å−3 |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
| Cd1 | 0.08672 (3) | 0.32297 (3) | 0.90289 (3) | 0.02898 (11) | |
| O1 | −0.0532 (4) | 0.6070 (4) | 0.8593 (3) | 0.0337 (6) | |
| O2 | 0.0672 (4) | 0.8334 (4) | 0.8475 (3) | 0.0382 (6) | |
| O3 | 0.1082 (4) | 0.7617 (4) | 0.1628 (3) | 0.0347 (6) | |
| O4 | −0.1232 (4) | 0.6718 (4) | 0.3685 (3) | 0.0405 (7) | |
| O5 | 0.2389 (4) | 0.0533 (4) | 0.9029 (4) | 0.0414 (7) | |
| H5A | 0.209 (10) | 0.017 (10) | 0.849 (9) | 0.10 (2)* | |
| H5B | 0.211 (10) | −0.024 (10) | 0.994 (9) | 0.10 (3)* | |
| N1 | 0.3422 (4) | 0.4507 (4) | 0.8114 (4) | 0.0340 (7) | |
| N2 | 0.5999 (5) | 0.5524 (5) | 0.6516 (4) | 0.0453 (9) | |
| H2 | 0.687 (9) | 0.587 (9) | 0.570 (8) | 0.08 (2)* | |
| C1 | 0.0393 (5) | 0.7429 (5) | 0.7840 (4) | 0.0272 (7) | |
| C2 | 0.1174 (5) | 0.7962 (5) | 0.6165 (4) | 0.0255 (7) | |
| C3 | 0.2660 (5) | 0.8979 (5) | 0.5366 (4) | 0.0325 (8) | |
| H3 | 0.3153 | 0.9372 | 0.5868 | 0.039* | |
| C4 | 0.3406 (5) | 0.9406 (6) | 0.3814 (5) | 0.0398 (9) | |
| H4 | 0.4428 | 1.0048 | 0.3284 | 0.048* | |
| C5 | 0.2642 (5) | 0.8885 (5) | 0.3047 (4) | 0.0333 (8) | |
| H5 | 0.3145 | 0.9184 | 0.2006 | 0.040* | |
| C8 | 0.0251 (5) | 0.7384 (5) | 0.3016 (4) | 0.0293 (8) | |
| C7 | 0.0420 (4) | 0.7439 (4) | 0.5394 (4) | 0.0248 (7) | |
| H7 | −0.0575 | 0.6757 | 0.5930 | 0.030* | |
| C11 | 0.4652 (6) | 0.4570 (6) | 0.6844 (5) | 0.0425 (10) | |
| H11 | 0.4592 | 0.4010 | 0.6235 | 0.051* | |
| C10 | 0.4032 (6) | 0.5481 (6) | 0.8641 (5) | 0.0436 (10) | |
| H10 | 0.3441 | 0.5688 | 0.9532 | 0.052* | |
| C9 | 0.5632 (6) | 0.6097 (7) | 0.7663 (6) | 0.0488 (11) | |
| H9 | 0.6338 | 0.6779 | 0.7762 | 0.059* | |
| C6 | 0.1121 (5) | 0.7914 (5) | 0.3837 (4) | 0.0261 (7) |
| Cd1 | 0.03179 (17) | 0.03293 (17) | 0.02429 (16) | −0.01047 (11) | −0.00754 (11) | −0.01069 (12) |
| O1 | 0.0381 (15) | 0.0359 (15) | 0.0243 (13) | −0.0070 (12) | −0.0089 (11) | −0.0074 (11) |
| O2 | 0.0528 (17) | 0.0447 (16) | 0.0260 (13) | −0.0095 (13) | −0.0144 (12) | −0.0175 (12) |
| O3 | 0.0442 (15) | 0.0420 (15) | 0.0236 (13) | −0.0069 (12) | −0.0114 (11) | −0.0154 (11) |
| O4 | 0.0422 (16) | 0.0530 (18) | 0.0302 (14) | −0.0195 (13) | −0.0118 (12) | −0.0125 (13) |
| O5 | 0.0440 (17) | 0.0385 (16) | 0.0405 (17) | −0.0083 (13) | −0.0105 (14) | −0.0137 (15) |
| N1 | 0.0310 (16) | 0.0374 (18) | 0.0328 (17) | −0.0080 (13) | −0.0085 (13) | −0.0114 (14) |
| N2 | 0.0336 (19) | 0.055 (2) | 0.039 (2) | −0.0110 (17) | −0.0046 (16) | −0.0120 (18) |
| C1 | 0.0274 (18) | 0.0310 (19) | 0.0236 (17) | −0.0004 (14) | −0.0103 (14) | −0.0091 (15) |
| C2 | 0.0289 (18) | 0.0254 (17) | 0.0223 (17) | −0.0011 (14) | −0.0100 (14) | −0.0073 (14) |
| C3 | 0.036 (2) | 0.042 (2) | 0.0276 (19) | −0.0122 (16) | −0.0133 (16) | −0.0137 (16) |
| C4 | 0.033 (2) | 0.053 (3) | 0.032 (2) | −0.0214 (18) | −0.0048 (16) | −0.0118 (18) |
| C5 | 0.035 (2) | 0.042 (2) | 0.0202 (17) | −0.0076 (16) | −0.0060 (15) | −0.0092 (16) |
| C8 | 0.038 (2) | 0.0273 (18) | 0.0267 (18) | −0.0028 (15) | −0.0152 (16) | −0.0089 (15) |
| C7 | 0.0250 (17) | 0.0278 (17) | 0.0220 (17) | −0.0045 (13) | −0.0084 (13) | −0.0075 (14) |
| C11 | 0.040 (2) | 0.050 (3) | 0.040 (2) | −0.0124 (19) | −0.0100 (18) | −0.017 (2) |
| C10 | 0.036 (2) | 0.057 (3) | 0.042 (2) | −0.0128 (19) | −0.0100 (18) | −0.021 (2) |
| C9 | 0.040 (2) | 0.057 (3) | 0.054 (3) | −0.017 (2) | −0.015 (2) | −0.020 (2) |
| C6 | 0.0285 (18) | 0.0281 (18) | 0.0248 (17) | −0.0013 (14) | −0.0113 (14) | −0.0105 (14) |
| Cd1—N1 | 2.216 (3) | N2—H2 | 0.85 (7) |
| Cd1—O3i | 2.251 (3) | C1—C2 | 1.492 (5) |
| Cd1—O2ii | 2.311 (3) | C2—C7 | 1.384 (5) |
| Cd1—O5 | 2.394 (3) | C2—C3 | 1.388 (5) |
| Cd1—O1 | 2.413 (3) | C3—C4 | 1.389 (5) |
| Cd1—O1ii | 2.626 (3) | C3—H3 | 0.9300 |
| Cd1—O4i | 2.663 (3) | C4—C5 | 1.387 (6) |
| O1—C1 | 1.266 (5) | C4—H4 | 0.9300 |
| O2—C1 | 1.260 (4) | C5—C6 | 1.391 (5) |
| O3—C8 | 1.276 (4) | C5—H5 | 0.9300 |
| O4—C8 | 1.252 (5) | C8—C6 | 1.501 (5) |
| O5—H5A | 0.84 (8) | C7—C6 | 1.387 (5) |
| O5—H5B | 0.87 (8) | C7—H7 | 0.9300 |
| N1—C11 | 1.306 (5) | C11—H11 | 0.9300 |
| N1—C10 | 1.368 (5) | C10—C9 | 1.356 (6) |
| N2—C11 | 1.330 (6) | C10—H10 | 0.9300 |
| N2—C9 | 1.351 (6) | C9—H9 | 0.9300 |
| N1—Cd1—O3i | 143.34 (11) | C9—N2—H2 | 124 (4) |
| N1—Cd1—O2ii | 127.43 (11) | O2—C1—O1 | 121.5 (3) |
| O3i—Cd1—O2ii | 88.49 (10) | O2—C1—C2 | 119.4 (3) |
| N1—Cd1—O5 | 88.63 (11) | O1—C1—C2 | 119.1 (3) |
| O3i—Cd1—O5 | 87.33 (11) | C7—C2—C3 | 119.4 (3) |
| O2ii—Cd1—O5 | 85.20 (11) | C7—C2—C1 | 120.0 (3) |
| N1—Cd1—O1 | 89.20 (11) | C3—C2—C1 | 120.5 (3) |
| O3i—Cd1—O1 | 89.03 (10) | C2—C3—C4 | 119.7 (3) |
| O2ii—Cd1—O1 | 103.25 (10) | C2—C3—H3 | 120.2 |
| O5—Cd1—O1 | 170.71 (11) | C4—C3—H3 | 120.2 |
| N1—Cd1—O1ii | 83.08 (10) | C5—C4—C3 | 120.6 (4) |
| O3i—Cd1—O1ii | 131.61 (9) | C5—C4—H4 | 119.7 |
| O2ii—Cd1—O1ii | 52.58 (9) | C3—C4—H4 | 119.7 |
| O5—Cd1—O1ii | 112.79 (11) | C4—C5—C6 | 119.8 (3) |
| O1—Cd1—O1ii | 75.89 (9) | C4—C5—H5 | 120.1 |
| N1—Cd1—O4i | 91.00 (10) | C6—C5—H5 | 120.1 |
| O3i—Cd1—O4i | 52.54 (9) | O4—C8—O3 | 121.5 (3) |
| O2ii—Cd1—O4i | 137.72 (9) | O4—C8—C6 | 120.7 (3) |
| O5—Cd1—O4i | 78.09 (11) | O3—C8—C6 | 117.8 (3) |
| O1—Cd1—O4i | 92.92 (9) | C2—C7—C6 | 121.2 (3) |
| O1ii—Cd1—O4i | 167.35 (9) | C2—C7—H7 | 119.4 |
| C1—O1—Cd1 | 119.5 (2) | C6—C7—H7 | 119.4 |
| C1—O1—Cd1ii | 85.5 (2) | N1—C11—N2 | 112.7 (4) |
| Cd1—O1—Cd1ii | 104.11 (9) | N1—C11—H11 | 123.7 |
| C1—O2—Cd1ii | 100.4 (2) | N2—C11—H11 | 123.7 |
| C8—O3—Cd1i | 102.2 (2) | C9—C10—N1 | 109.4 (4) |
| Cd1—O5—H5A | 108 (5) | C9—C10—H10 | 125.3 |
| Cd1—O5—H5B | 110 (5) | N1—C10—H10 | 125.3 |
| H5A—O5—H5B | 109 (7) | N2—C9—C10 | 106.5 (4) |
| C11—N1—C10 | 104.7 (3) | N2—C9—H9 | 126.7 |
| C11—N1—Cd1 | 125.3 (3) | C10—C9—H9 | 126.7 |
| C10—N1—Cd1 | 129.8 (3) | C7—C6—C5 | 119.1 (3) |
| C11—N2—C9 | 106.7 (4) | C7—C6—C8 | 120.4 (3) |
| C11—N2—H2 | 129 (4) | C5—C6—C8 | 120.4 (3) |
| N1—Cd1—O1—C1 | 9.8 (3) | O2—C1—C2—C7 | −156.1 (3) |
| O3i—Cd1—O1—C1 | −133.6 (3) | O1—C1—C2—C7 | 24.1 (5) |
| O2ii—Cd1—O1—C1 | 138.2 (3) | O2—C1—C2—C3 | 24.1 (5) |
| O1ii—Cd1—O1—C1 | 92.8 (3) | O1—C1—C2—C3 | −155.6 (4) |
| O4i—Cd1—O1—C1 | −81.2 (3) | C7—C2—C3—C4 | −2.3 (6) |
| N1—Cd1—O1—Cd1ii | −83.06 (11) | C1—C2—C3—C4 | 177.5 (4) |
| O3i—Cd1—O1—Cd1ii | 133.56 (10) | C2—C3—C4—C5 | 2.6 (7) |
| O2ii—Cd1—O1—Cd1ii | 45.34 (11) | C3—C4—C5—C6 | −0.5 (7) |
| O1ii—Cd1—O1—Cd1ii | 0.0 | Cd1i—O3—C8—O4 | 4.2 (4) |
| O4i—Cd1—O1—Cd1ii | −174.03 (9) | Cd1i—O3—C8—C6 | −176.6 (3) |
| O3i—Cd1—N1—C11 | −24.3 (5) | C3—C2—C7—C6 | −0.1 (5) |
| O2ii—Cd1—N1—C11 | 142.2 (3) | C1—C2—C7—C6 | −179.9 (3) |
| O5—Cd1—N1—C11 | 59.3 (4) | C10—N1—C11—N2 | −0.4 (5) |
| O1—Cd1—N1—C11 | −111.6 (4) | Cd1—N1—C11—N2 | 175.6 (3) |
| O1ii—Cd1—N1—C11 | 172.5 (4) | C9—N2—C11—N1 | 1.0 (6) |
| O4i—Cd1—N1—C11 | −18.7 (4) | C11—N1—C10—C9 | −0.4 (5) |
| O3i—Cd1—N1—C10 | 150.6 (3) | Cd1—N1—C10—C9 | −176.1 (3) |
| O2ii—Cd1—N1—C10 | −42.9 (4) | C11—N2—C9—C10 | −1.2 (5) |
| O5—Cd1—N1—C10 | −125.8 (4) | N1—C10—C9—N2 | 0.9 (6) |
| O1—Cd1—N1—C10 | 63.3 (4) | C2—C7—C6—C5 | 2.1 (5) |
| O1ii—Cd1—N1—C10 | −12.6 (4) | C2—C7—C6—C8 | −178.0 (3) |
| O4i—Cd1—N1—C10 | 156.2 (4) | C4—C5—C6—C7 | −1.8 (6) |
| Cd1ii—O2—C1—O1 | 0.1 (4) | C4—C5—C6—C8 | 178.3 (4) |
| Cd1ii—O2—C1—C2 | −179.6 (3) | O4—C8—C6—C7 | 9.7 (5) |
| Cd1—O1—C1—O2 | −103.8 (4) | O3—C8—C6—C7 | −169.4 (3) |
| Cd1ii—O1—C1—O2 | −0.1 (3) | O4—C8—C6—C5 | −170.4 (4) |
| Cd1—O1—C1—C2 | 76.0 (4) | O3—C8—C6—C5 | 10.4 (5) |
| Cd1ii—O1—C1—C2 | 179.6 (3) |
| H··· | ||||
| O5—H5A···O2iii | 0.84 (8) | 2.07 (8) | 2.809 (4) | 146 (7) |
| O5—H5B···O3iv | 0.87 (8) | 1.96 (8) | 2.786 (4) | 158 (7) |
| N2—H2···O4v | 0.85 (7) | 2.00 (7) | 2.854 (5) | 175 (6) |
Selected bond lengths (Å)
| Cd1—N1 | 2.216 (3) |
| Cd1—O3i | 2.251 (3) |
| Cd1—O2ii | 2.311 (3) |
| Cd1—O5 | 2.394 (3) |
| Cd1—O1 | 2.413 (3) |
| Cd1—O1ii | 2.626 (3) |
| Cd1—O4i | 2.663 (3) |
Symmetry codes: (i) ; (ii) .
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| O5—H5 | 0.84 (8) | 2.07 (8) | 2.809 (4) | 146 (7) |
| O5—H5 | 0.87 (8) | 1.96 (8) | 2.786 (4) | 158 (7) |
| N2—H2⋯O4v | 0.85 (7) | 2.00 (7) | 2.854 (5) | 175 (6) |
Symmetry codes: (iii) ; (iv) ; (v) .