Literature DB >> 21587714

(5,15-Dianthracen-9-yl-10,20-dihexyl-porphyrinato)nickel(II): a planar nickel(II) porphyrin.

Mathias O Senge1, Mia Davis.   

Abstract

The title compound, [Ni(C(60)H(52)N(4))], is an example of a meso tetra-substituted nickel(II) porphyrin with both meso aryl and alkyl residues. The mol-ecule exhibits a planar macrocycle with an average deviation of the 24 macrocycle atoms from their least-squares plane (Δ24) of 0.01 Å and an average Ni-N bond length of 1.960 (2) Å. The Ni(II) atom lies on a center of inversion. The structure presents a rare example for a planar nickel(II) porphyrin, as meso-substituted nickel(II) porphyrins with either only meso-aryl or with meso-alkyl residues typically exhibit a ruffled conformation.

Entities:  

Year:  2010        PMID: 21587714      PMCID: PMC3006865          DOI: 10.1107/S1600536810021434

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the conformation of porphyrins, see: Senge (2006 ▶). For porphyrins with mixed meso substituents, see: Senge et al. (2010 ▶). For Ni(II) porphyrin structures, see: Fleischer et al. (1964 ▶); Gallucci et al. (1982 ▶); Hoard (1973 ▶); Lee & Scheidt (1987 ▶); Senge et al. (1999 ▶, 2000 ▶) and Runge et al. (1999 ▶). For anthracenyl porphyrins see: Volz & Schäffer (1985 ▶); Davis et al. (2008 ▶); Sooambar et al. (2009 ▶). For the handling of the crystals, see: Hope (1994 ▶).

Experimental

Crystal data

[Ni(C60H52N4)] M = 887.77 Triclinic, a = 7.797 (3) Å b = 9.387 (3) Å c = 15.285 (5) Å α = 97.246 (6)° β = 91.222 (4)° γ = 91.402 (6)° V = 1109.1 (7) Å3 Z = 1 Mo Kα radiation μ = 0.48 mm−1 T = 118 K 0.50 × 0.20 × 0.05 mm

Data collection

Rigaku Saturn724 diffractometer 17330 measured reflections 3875 independent reflections 3233 reflections with I > 2σ(I) R int = 0.070

Refinement

R[F 2 > 2σ(F 2)] = 0.039 wR(F 2) = 0.087 S = 1.00 3875 reflections 296 parameters H-atom parameters constrained Δρmax = 0.37 e Å−3 Δρmin = −0.40 e Å−3 Data collection: CrystalClear (Rigaku, 2008 ▶); cell refinement: CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536810021434/ng2783sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810021434/ng2783Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Ni(C60H52N4)]Z = 1
Mr = 887.77F(000) = 468
Triclinic, P1Dx = 1.329 Mg m3
Hall symbol: -P 1Melting point: n/d K
a = 7.797 (3) ÅMo Kα radiation, λ = 0.71075 Å
b = 9.387 (3) ÅCell parameters from 3864 reflections
c = 15.285 (5) Åθ = 2.4–31.2°
α = 97.246 (6)°µ = 0.48 mm1
β = 91.222 (4)°T = 118 K
γ = 91.402 (6)°Prism, red
V = 1109.1 (7) Å30.50 × 0.20 × 0.05 mm
Rigaku Saturn724 diffractometer3233 reflections with I > 2σ(I)
Radiation source: Sealed TubeRint = 0.070
Graphite Monochromatorθmax = 25.0°, θmin = 3.0°
Detector resolution: 28.5714 pixels mm-1h = −9→9
dtprofit.ref scansk = −11→11
17330 measured reflectionsl = −18→18
3875 independent reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.039Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.087H-atom parameters constrained
S = 1.00w = 1/[σ2(Fo2) + (0.0371P)2] where P = (Fo2 + 2Fc2)/3
3875 reflections(Δ/σ)max < 0.001
296 parametersΔρmax = 0.37 e Å3
0 restraintsΔρmin = −0.40 e Å3
0 constraints
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Ni0.00000.50000.00000.01798 (12)
N210.1442 (2)0.47152 (16)0.10290 (10)0.0185 (4)
N220.1822 (2)0.62389 (16)−0.03788 (10)0.0192 (4)
C5−0.0499 (3)0.31349 (19)0.17545 (13)0.0185 (4)
C60.1022 (3)0.3901 (2)0.16960 (13)0.0198 (5)
C70.2375 (3)0.3969 (2)0.23403 (13)0.0247 (5)
H7A0.23830.35000.28560.030*
C80.3643 (3)0.4817 (2)0.20886 (14)0.0243 (5)
H8A0.47070.50590.23910.029*
C90.3069 (3)0.5284 (2)0.12716 (13)0.0194 (5)
C100.4031 (3)0.6194 (2)0.08102 (13)0.0204 (5)
C110.3407 (3)0.6617 (2)0.00254 (13)0.0197 (5)
C120.4362 (3)0.7542 (2)−0.04785 (14)0.0244 (5)
H12A0.54760.7949−0.03370.029*
C130.3384 (3)0.7725 (2)−0.11872 (14)0.0248 (5)
H13A0.36770.8283−0.16420.030*
C140.1820 (3)0.69232 (19)−0.11298 (13)0.0190 (5)
C5A−0.0738 (3)0.2335 (2)0.25355 (13)0.0205 (5)
C5B−0.0381 (3)0.0855 (2)0.24777 (14)0.0230 (5)
C5C0.0207 (3)0.0055 (2)0.16833 (15)0.0263 (5)
H5CA0.04050.05340.11810.032*
C5D0.0488 (3)−0.1376 (2)0.16363 (16)0.0334 (6)
H5DA0.0880−0.18840.11040.040*
C5E0.0197 (3)−0.2119 (2)0.23800 (17)0.0360 (6)
H5EA0.0382−0.31220.23380.043*
C5F−0.0339 (3)−0.1403 (2)0.31441 (16)0.0321 (6)
H5FA−0.0517−0.19130.36350.038*
C5G−0.0645 (3)0.0104 (2)0.32312 (14)0.0255 (5)
C5H−0.1190 (3)0.0864 (2)0.40177 (14)0.0276 (5)
H5HA−0.13380.03670.45160.033*
C5I−0.1523 (3)0.2321 (2)0.40970 (13)0.0230 (5)
C5J−0.2098 (3)0.3101 (2)0.48906 (14)0.0318 (6)
H5JA−0.21960.26280.54020.038*
C5K−0.2508 (3)0.4502 (2)0.49355 (15)0.0393 (6)
H5KA−0.28770.50030.54750.047*
C5L−0.2383 (3)0.5230 (2)0.41624 (15)0.0347 (6)
H5LA−0.27190.62000.41860.042*
C5M−0.1797 (3)0.4549 (2)0.34139 (15)0.0298 (5)
H5MA−0.16770.50610.29200.036*
C5N−0.1344 (3)0.3070 (2)0.33320 (13)0.0230 (5)
C10A0.5771 (3)0.6803 (2)0.11646 (13)0.0235 (5)
H10A0.65770.67810.06710.028*
H10B0.62320.61890.15910.028*
C10B0.5667 (3)0.8359 (2)0.16236 (13)0.0265 (5)
H10C0.68350.88050.16700.032*
H10D0.49550.89130.12500.032*
C10C0.4915 (3)0.8477 (2)0.25444 (14)0.0279 (5)
H10E0.57180.80510.29430.033*
H10F0.38230.79090.25140.033*
C10D0.4574 (3)1.0030 (2)0.29382 (14)0.0287 (5)
H10G0.56371.06220.29160.034*
H10H0.36811.04250.25740.034*
C10E0.4000 (3)1.0138 (2)0.38747 (15)0.0356 (6)
H10I0.49380.98240.42460.043*
H10J0.30040.94730.39040.043*
C10F0.3500 (3)1.1641 (2)0.42523 (14)0.0316 (6)
H10K0.32921.16660.48840.047*
H10L0.24531.19000.39500.047*
H10M0.44301.23260.41660.047*
U11U22U33U12U13U23
Ni0.0227 (2)0.0162 (2)0.0154 (2)−0.00037 (16)0.00200 (15)0.00351 (15)
N210.0227 (10)0.0156 (8)0.0174 (9)−0.0013 (7)0.0034 (7)0.0021 (7)
N220.0240 (10)0.0184 (9)0.0155 (9)0.0016 (8)0.0008 (7)0.0030 (7)
C50.0243 (12)0.0137 (10)0.0171 (10)−0.0003 (9)0.0026 (9)0.0004 (8)
C60.0279 (13)0.0145 (10)0.0170 (11)0.0015 (9)0.0004 (9)0.0020 (8)
C70.0307 (13)0.0231 (11)0.0212 (11)−0.0003 (10)−0.0011 (10)0.0069 (9)
C80.0244 (12)0.0235 (11)0.0252 (12)−0.0005 (9)−0.0043 (9)0.0048 (9)
C90.0219 (12)0.0161 (10)0.0198 (11)0.0005 (9)0.0000 (9)0.0005 (9)
C100.0215 (12)0.0177 (10)0.0211 (11)0.0032 (9)0.0025 (9)−0.0015 (9)
C110.0208 (12)0.0171 (10)0.0204 (11)−0.0007 (9)0.0021 (9)−0.0005 (9)
C120.0243 (12)0.0245 (11)0.0246 (12)−0.0043 (9)0.0021 (9)0.0047 (9)
C130.0282 (13)0.0248 (11)0.0221 (11)−0.0045 (10)0.0024 (9)0.0061 (9)
C140.0249 (12)0.0138 (10)0.0184 (10)−0.0005 (9)0.0027 (9)0.0028 (8)
C5A0.0206 (12)0.0199 (11)0.0209 (11)−0.0033 (9)−0.0013 (9)0.0036 (9)
C5B0.0215 (12)0.0224 (11)0.0254 (12)−0.0028 (9)−0.0011 (9)0.0050 (9)
C5C0.0235 (12)0.0243 (12)0.0312 (13)−0.0006 (10)0.0029 (10)0.0029 (10)
C5D0.0297 (14)0.0295 (13)0.0400 (14)0.0025 (11)0.0049 (11)0.0001 (11)
C5E0.0338 (15)0.0204 (12)0.0548 (17)0.0030 (10)0.0046 (12)0.0073 (11)
C5F0.0275 (14)0.0275 (12)0.0445 (15)0.0023 (10)0.0012 (11)0.0166 (11)
C5G0.0227 (12)0.0242 (12)0.0308 (12)−0.0018 (9)−0.0011 (10)0.0088 (10)
C5H0.0259 (13)0.0333 (13)0.0259 (12)−0.0043 (10)−0.0008 (10)0.0135 (10)
C5I0.0234 (12)0.0244 (11)0.0218 (11)−0.0032 (9)0.0020 (9)0.0056 (9)
C5J0.0353 (14)0.0375 (14)0.0232 (12)−0.0075 (11)0.0003 (10)0.0075 (10)
C5K0.0509 (17)0.0376 (14)0.0268 (13)−0.0036 (12)0.0092 (12)−0.0069 (11)
C5L0.0490 (17)0.0188 (11)0.0359 (14)0.0024 (11)0.0132 (12)−0.0006 (10)
C5M0.0370 (14)0.0257 (12)0.0282 (13)−0.0016 (10)0.0020 (10)0.0090 (10)
C5N0.0238 (12)0.0220 (11)0.0234 (11)−0.0015 (9)0.0003 (9)0.0035 (9)
C10A0.0212 (12)0.0290 (12)0.0209 (11)−0.0013 (9)0.0002 (9)0.0059 (9)
C10B0.0222 (12)0.0306 (12)0.0262 (12)−0.0058 (10)−0.0007 (10)0.0035 (10)
C10C0.0286 (13)0.0284 (12)0.0269 (12)−0.0013 (10)−0.0015 (10)0.0048 (10)
C10D0.0265 (13)0.0316 (12)0.0282 (12)−0.0031 (10)−0.0030 (10)0.0057 (10)
C10E0.0428 (16)0.0354 (13)0.0285 (13)0.0020 (11)0.0001 (11)0.0033 (11)
C10F0.0368 (15)0.0288 (12)0.0289 (13)0.0039 (11)0.0004 (11)0.0019 (10)
Ni—N221.9570 (17)C5E—H5EA0.9500
Ni—N22i1.9570 (17)C5F—C5G1.430 (3)
Ni—N21i1.9632 (17)C5F—H5FA0.9500
Ni—N211.9632 (17)C5G—C5H1.399 (3)
N21—C61.389 (2)C5H—C5I1.389 (3)
N21—C91.389 (3)C5H—H5HA0.9500
N22—C141.384 (2)C5I—C5J1.423 (3)
N22—C111.388 (3)C5I—C5N1.446 (3)
C5—C61.382 (3)C5J—C5K1.354 (3)
C5—C14i1.385 (3)C5J—H5JA0.9500
C5—C5A1.501 (3)C5K—C5L1.442 (3)
C6—C71.423 (3)C5K—H5KA0.9500
C7—C81.346 (3)C5L—C5M1.333 (3)
C7—H7A0.9500C5L—H5LA0.9500
C8—C91.441 (3)C5M—C5N1.433 (3)
C8—H8A0.9500C5M—H5MA0.9500
C9—C101.390 (3)C10A—C10B1.544 (3)
C10—C111.392 (3)C10A—H10A0.9900
C10—C10A1.521 (3)C10A—H10B0.9900
C11—C121.436 (3)C10B—C10C1.529 (3)
C12—C131.343 (3)C10B—H10C0.9900
C12—H12A0.9500C10B—H10D0.9900
C13—C141.427 (3)C10C—C10D1.538 (3)
C13—H13A0.9500C10C—H10E0.9900
C14—C5i1.385 (3)C10C—H10F0.9900
C5A—C5B1.416 (3)C10D—C10E1.501 (3)
C5A—C5N1.417 (3)C10D—H10G0.9900
C5B—C5C1.435 (3)C10D—H10H0.9900
C5B—C5G1.440 (3)C10E—C10F1.518 (3)
C5C—C5D1.359 (3)C10E—H10I0.9900
C5C—H5CA0.9500C10E—H10J0.9900
C5D—C5E1.426 (3)C10F—H10K0.9800
C5D—H5DA0.9500C10F—H10L0.9800
C5E—C5F1.352 (3)C10F—H10M0.9800
N22—Ni—N22i180.00 (8)C5H—C5G—C5F122.4 (2)
N22—Ni—N21i91.02 (7)C5H—C5G—C5B119.23 (19)
N22i—Ni—N21i88.98 (7)C5F—C5G—C5B118.4 (2)
N22—Ni—N2188.98 (7)C5I—C5H—C5G122.40 (19)
N22i—Ni—N2191.02 (7)C5I—C5H—H5HA118.8
N21i—Ni—N21180.00 (9)C5G—C5H—H5HA118.8
C6—N21—C9104.27 (16)C5H—C5I—C5J122.86 (19)
C6—N21—Ni126.74 (14)C5H—C5I—C5N118.78 (19)
C9—N21—Ni128.98 (13)C5J—C5I—C5N118.31 (19)
C14—N22—C11104.18 (16)C5K—C5J—C5I121.6 (2)
C14—N22—Ni127.19 (14)C5K—C5J—H5JA119.2
C11—N22—Ni128.63 (13)C5I—C5J—H5JA119.2
C6—C5—C14i123.17 (18)C5J—C5K—C5L119.8 (2)
C6—C5—C5A118.53 (18)C5J—C5K—H5KA120.1
C14i—C5—C5A118.30 (18)C5L—C5K—H5KA120.1
C5—C6—N21126.01 (18)C5M—C5L—C5K120.3 (2)
C5—C6—C7123.21 (18)C5M—C5L—H5LA119.8
N21—C6—C7110.77 (18)C5K—C5L—H5LA119.8
C8—C7—C6107.78 (19)C5L—C5M—C5N122.0 (2)
C8—C7—H7A126.1C5L—C5M—H5MA119.0
C6—C7—H7A126.1C5N—C5M—H5MA119.0
C7—C8—C9106.63 (19)C5A—C5N—C5M122.31 (19)
C7—C8—H8A126.7C5A—C5N—C5I119.88 (18)
C9—C8—H8A126.7C5M—C5N—C5I117.81 (18)
N21—C9—C10125.85 (19)C10—C10A—C10B112.21 (17)
N21—C9—C8110.55 (17)C10—C10A—H10A109.2
C10—C9—C8123.6 (2)C10B—C10A—H10A109.2
C9—C10—C11121.1 (2)C10—C10A—H10B109.2
C9—C10—C10A121.00 (19)C10B—C10A—H10B109.2
C11—C10—C10A117.87 (18)H10A—C10A—H10B107.9
N22—C11—C10126.47 (18)C10C—C10B—C10A113.98 (17)
N22—C11—C12110.47 (18)C10C—C10B—H10C108.8
C10—C11—C12123.1 (2)C10A—C10B—H10C108.8
C13—C12—C11107.1 (2)C10C—C10B—H10D108.8
C13—C12—H12A126.4C10A—C10B—H10D108.8
C11—C12—H12A126.4H10C—C10B—H10D107.7
C12—C13—C14107.17 (19)C10B—C10C—C10D113.40 (17)
C12—C13—H13A126.4C10B—C10C—H10E108.9
C14—C13—H13A126.4C10D—C10C—H10E108.9
N22—C14—C5i125.85 (19)C10B—C10C—H10F108.9
N22—C14—C13111.04 (18)C10D—C10C—H10F108.9
C5i—C14—C13123.11 (18)H10E—C10C—H10F107.7
C5B—C5A—C5N120.05 (18)C10E—C10D—C10C112.63 (18)
C5B—C5A—C5120.47 (18)C10E—C10D—H10G109.1
C5N—C5A—C5119.47 (17)C10C—C10D—H10G109.1
C5A—C5B—C5C122.32 (19)C10E—C10D—H10H109.1
C5A—C5B—C5G119.53 (19)C10C—C10D—H10H109.1
C5C—C5B—C5G118.13 (18)H10G—C10D—H10H107.8
C5D—C5C—C5B121.2 (2)C10D—C10E—C10F113.70 (18)
C5D—C5C—H5CA119.4C10D—C10E—H10I108.8
C5B—C5C—H5CA119.4C10F—C10E—H10I108.8
C5C—C5D—C5E120.5 (2)C10D—C10E—H10J108.8
C5C—C5D—H5DA119.8C10F—C10E—H10J108.8
C5E—C5D—H5DA119.8H10I—C10E—H10J107.7
C5F—C5E—C5D120.3 (2)C10E—C10F—H10K109.5
C5F—C5E—H5EA119.9C10E—C10F—H10L109.5
C5D—C5E—H5EA119.9H10K—C10F—H10L109.5
C5E—C5F—C5G121.6 (2)C10E—C10F—H10M109.5
C5E—C5F—H5FA119.2H10K—C10F—H10M109.5
C5G—C5F—H5FA119.2H10L—C10F—H10M109.5
Table 1

Selected bond lengths (Å)

Ni—N221.9570 (17)
Ni—N211.9632 (17)
  5 in total

1.  Exercises in molecular gymnastics--bending, stretching and twisting porphyrins.

Authors:  Mathias O Senge
Journal:  Chem Commun (Camb)       Date:  2005-10-14       Impact factor: 6.222

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  Some aspects of metalloporphyrin stereochemistry.

Authors:  J L Hoard
Journal:  Ann N Y Acad Sci       Date:  1973       Impact factor: 5.691

4.  Expanding the porphyrin pi-system by fusion with anthracene.

Authors:  Nicola K S Davis; Miłosz Pawlicki; Harry L Anderson
Journal:  Org Lett       Date:  2008-08-23       Impact factor: 6.005

5.  Synthesis, photophysical, electrochemical, and electrochemiluminescent properties of 5,15-bis(9-anthracenyl)porphyrin derivatives.

Authors:  Chloè Sooambar; Vincent Troiani; Carlo Bruno; Massimo Marcaccio; Francesco Paolucci; Andrea Listorti; Abdelhalim Belbakra; Nicola Armaroli; Alessandra Magistrato; Rita De Zorzi; Silvano Geremia; Davide Bonifazi
Journal:  Org Biomol Chem       Date:  2009-04-16       Impact factor: 3.876

  5 in total
  1 in total

1.  [5,15-Bis(2-methyl-prop-yl)porphyrinato]nickel(II).

Authors:  Mathias O Senge
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-08-23
  1 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.