Literature DB >> 21587702

Bis[N,N-dimethyl-1-(10H-pyrido[3,2-b][1,4]benzothia-zin-10-yl)propan-2-aminium] tetrakis-(thio-cyanato-κN)cobaltate(II).

H K Arunkashi, S Jeyaseelan, Suresh Babu Vepuri, H D Revanasiddappa, H C Devarajegowda.   

Abstract

The asymmetric unit of the title salt, (C(16)H(20)N(3)S)(2)[Co(NCS)(4)], comprises one monovalent isothio-pendylium cation and one-half of a divalent thio-cyanatocobaltate(II) anion (2 symmetry). The central thia-zine ring of the cation is slightly twisted in a boat-like fashion, with r.m.s. deviations from the mean plane of 0.272 (1) and 0.2852 (8) Å for the N and S atoms. The mol-ecular structure of the cation is stabilized by an intra-molecular N-H⋯N hydrogen bond. Within the complex anion, the Co(II) atom is tetra-hedrally surrounded by four N atoms of the thio-cyanate ligands. π-π stacking, with a distance of 3.7615 (10) Å between the centroids of benzene and pyridine rings, helps to consolidate the packing.

Entities:  

Year:  2010        PMID: 21587702      PMCID: PMC3006707          DOI: 10.1107/S1600536810021367

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background to isothipendyl, cobalt(II) and thio­cyanate compounds, see: Kinnamon et al. (1994 ▶); Moreau et al. (1995 ▶); Scott et al. (1990 ▶); Hudson et al. (2005 ▶). For a related structure, see: Shi et al. (2005 ▶).

Experimental

Crystal data

(C16H20N3S)2[Co(NCS)4] M = 864.07 Monoclinic, a = 25.2420 (4) Å b = 11.4357 (2) Å c = 14.5939 (2) Å β = 98.557 (1)° V = 4165.78 (11) Å3 Z = 4 Mo Kα radiation μ = 0.75 mm−1 T = 295 K 0.22 × 0.15 × 0.12 mm

Data collection

Bruker APEXII CCD area-detector diffractometer Absorption correction: ψ scan (SADABS; Sheldrick, 2004 ▶) T min = 0.852, T max = 0.915 48347 measured reflections 6498 independent reflections 4566 reflections with I > 2σ(I) R int = 0.032

Refinement

R[F 2 > 2σ(F 2)] = 0.038 wR(F 2) = 0.114 S = 1.01 6498 reflections 243 parameters H-atom parameters constrained Δρmax = 0.30 e Å−3 Δρmin = −0.37 e Å−3 Data collection: APEX2 (Bruker, 2008 ▶); cell refinement: SAINT (Bruker, 2008 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536810021367/wm2356sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810021367/wm2356Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
(C16H20N3S)2[Co(NCS)4]F(000) = 1796
Mr = 864.07Dx = 1.378 Mg m3
Monoclinic, C2/cMelting point: 453 K
Hall symbol: -C 2ycMo Kα radiation, λ = 0.71073 Å
a = 25.2420 (4) ÅCell parameters from 6498 reflections
b = 11.4357 (2) Åθ = 1.6–30.8°
c = 14.5939 (2) ŵ = 0.75 mm1
β = 98.557 (1)°T = 295 K
V = 4165.78 (11) Å3Plate, green
Z = 40.22 × 0.15 × 0.12 mm
Bruker APEXII CCD area-detector diffractometer6498 independent reflections
Radiation source: fine-focus sealed tube4566 reflections with I > 2σ(I)
graphiteRint = 0.032
ω and φ scansθmax = 30.8°, θmin = 1.6°
Absorption correction: ψ scan (SADABS; Sheldrick, 2004)h = −36→36
Tmin = 0.852, Tmax = 0.915k = −16→16
48347 measured reflectionsl = −20→20
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.038Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.114H-atom parameters constrained
S = 1.01w = 1/[σ2(Fo2) + (0.0516P)2 + 2.3179P] where P = (Fo2 + 2Fc2)/3
6498 reflections(Δ/σ)max < 0.001
243 parametersΔρmax = 0.30 e Å3
0 restraintsΔρmin = −0.37 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Co10.00000.18800 (3)0.25000.05395 (11)
S10.169598 (17)0.36282 (5)0.31347 (4)0.06906 (15)
S20.09133 (3)0.39599 (6)0.04513 (5)0.0913 (2)
S3−0.09097 (2)−0.11877 (5)0.08464 (4)0.06810 (15)
N10.30192 (5)0.17216 (12)0.37667 (10)0.0479 (3)
N20.29026 (5)0.36667 (11)0.33141 (9)0.0428 (3)
N30.40850 (5)0.23282 (13)0.40260 (9)0.0503 (3)
H3A0.37810.18880.39530.060*
N40.04020 (8)0.28147 (18)0.17318 (14)0.0771 (5)
N5−0.04823 (6)0.08326 (15)0.17017 (11)0.0595 (4)
C20.28169 (8)0.06803 (16)0.39813 (13)0.0589 (4)
H20.30490.00490.41010.071*
C30.22864 (9)0.05145 (18)0.40307 (14)0.0663 (5)
H30.2161−0.02050.42040.080*
C40.19412 (7)0.14419 (19)0.38174 (14)0.0621 (5)
H40.15780.13520.38480.074*
C50.21316 (6)0.24990 (16)0.35591 (11)0.0487 (4)
C60.26864 (5)0.26126 (14)0.35550 (10)0.0413 (3)
C70.21115 (6)0.48282 (17)0.34832 (11)0.0506 (4)
C80.18804 (8)0.5880 (2)0.36902 (13)0.0653 (5)
H80.15130.59170.37000.078*
C90.21887 (10)0.6863 (2)0.38804 (14)0.0729 (6)
H90.20300.75670.40070.087*
C100.27306 (10)0.68031 (18)0.38826 (14)0.0693 (5)
H100.29390.74720.40000.083*
C110.29708 (8)0.57504 (16)0.37113 (12)0.0562 (4)
H110.33410.57150.37360.067*
C120.26658 (6)0.47499 (14)0.35030 (10)0.0443 (3)
C130.34445 (6)0.36661 (15)0.30759 (10)0.0440 (3)
H13A0.34910.43750.27320.053*
H13B0.34760.30110.26660.053*
C140.39047 (6)0.35898 (15)0.38957 (11)0.0459 (3)
H140.37630.38310.44560.055*
C150.43718 (7)0.4390 (2)0.37864 (16)0.0689 (5)
H15A0.46590.42540.42850.103*
H15B0.42580.51900.37990.103*
H15C0.44940.42300.32060.103*
C160.43609 (9)0.2099 (2)0.49819 (14)0.0752 (6)
H16A0.44900.13080.50240.113*
H16B0.41140.22110.54140.113*
H16C0.46570.26280.51250.113*
C170.44122 (9)0.1896 (2)0.33280 (17)0.0764 (6)
H17A0.47710.21910.34740.115*
H17B0.42580.21620.27230.115*
H17C0.44190.10570.33370.115*
C180.06195 (8)0.32922 (17)0.12044 (15)0.0622 (5)
C19−0.06629 (6)−0.00127 (16)0.13474 (12)0.0492 (4)
U11U22U33U12U13U23
Co10.04465 (17)0.0540 (2)0.0604 (2)0.000−0.00135 (13)0.000
S10.03187 (19)0.0899 (4)0.0813 (3)0.0035 (2)−0.00519 (19)0.0002 (3)
S20.0961 (5)0.0837 (4)0.0981 (5)−0.0315 (4)0.0272 (4)0.0016 (3)
S30.0596 (3)0.0733 (3)0.0717 (3)−0.0168 (2)0.0107 (2)−0.0148 (2)
N10.0407 (6)0.0498 (7)0.0536 (7)−0.0035 (5)0.0078 (5)0.0019 (6)
N20.0304 (5)0.0487 (7)0.0503 (7)−0.0008 (5)0.0087 (5)0.0030 (6)
N30.0354 (6)0.0617 (8)0.0528 (7)0.0017 (6)0.0038 (5)−0.0058 (6)
N40.0690 (11)0.0815 (12)0.0766 (11)−0.0245 (9)−0.0027 (9)0.0100 (10)
N50.0439 (7)0.0615 (9)0.0701 (9)−0.0001 (7)−0.0014 (6)−0.0029 (8)
C20.0628 (10)0.0498 (9)0.0644 (10)−0.0054 (8)0.0108 (8)0.0037 (8)
C30.0728 (12)0.0586 (11)0.0709 (12)−0.0233 (10)0.0218 (10)−0.0009 (9)
C40.0458 (8)0.0757 (12)0.0674 (11)−0.0228 (9)0.0172 (8)−0.0099 (10)
C50.0332 (6)0.0644 (10)0.0484 (8)−0.0073 (7)0.0055 (6)−0.0045 (7)
C60.0326 (6)0.0525 (8)0.0389 (7)−0.0047 (6)0.0054 (5)−0.0021 (6)
C70.0433 (7)0.0657 (10)0.0418 (7)0.0115 (7)0.0031 (6)0.0061 (7)
C80.0597 (10)0.0838 (14)0.0521 (9)0.0296 (10)0.0071 (8)0.0072 (9)
C90.0941 (16)0.0655 (13)0.0572 (11)0.0290 (12)0.0056 (10)0.0009 (9)
C100.0937 (16)0.0514 (10)0.0614 (11)0.0053 (10)0.0066 (10)0.0023 (9)
C110.0585 (10)0.0530 (10)0.0565 (9)−0.0007 (8)0.0066 (8)0.0047 (8)
C120.0431 (7)0.0520 (9)0.0375 (7)0.0056 (6)0.0046 (5)0.0057 (6)
C130.0340 (6)0.0550 (9)0.0448 (7)−0.0025 (6)0.0115 (5)0.0029 (6)
C140.0322 (6)0.0567 (9)0.0495 (8)−0.0044 (6)0.0085 (6)−0.0045 (7)
C150.0421 (8)0.0783 (13)0.0871 (14)−0.0189 (9)0.0116 (9)−0.0023 (11)
C160.0714 (13)0.0858 (15)0.0613 (11)0.0179 (11)−0.0133 (10)−0.0035 (10)
C170.0584 (11)0.0925 (16)0.0811 (14)0.0187 (11)0.0194 (10)−0.0162 (12)
C180.0510 (9)0.0556 (10)0.0757 (12)−0.0121 (8)−0.0049 (9)−0.0033 (9)
C190.0310 (6)0.0614 (10)0.0546 (9)0.0033 (6)0.0048 (6)0.0030 (8)
Co1—N4i1.9411 (19)C5—C61.4073 (19)
Co1—N41.9411 (19)C7—C81.389 (3)
Co1—N51.9626 (16)C7—C121.398 (2)
Co1—N5i1.9626 (16)C8—C91.372 (3)
S1—C51.7485 (18)C8—H80.9300
S1—C71.756 (2)C9—C101.369 (3)
S2—C181.607 (2)C9—H90.9300
S3—C191.6102 (19)C10—C111.387 (3)
N1—C61.328 (2)C10—H100.9300
N1—C21.351 (2)C11—C121.387 (2)
N2—C61.390 (2)C11—H110.9300
N2—C121.420 (2)C13—C141.541 (2)
N2—C131.4608 (18)C13—H13A0.9700
N3—C161.487 (2)C13—H13B0.9700
N3—C171.488 (2)C14—C151.519 (2)
N3—C141.516 (2)C14—H140.9800
N3—H3A0.9100C15—H15A0.9600
N4—C181.148 (3)C15—H15B0.9600
N5—C191.157 (2)C15—H15C0.9600
C2—C31.365 (3)C16—H16A0.9600
C2—H20.9300C16—H16B0.9600
C3—C41.378 (3)C16—H16C0.9600
C3—H30.9300C17—H17A0.9600
C4—C51.374 (3)C17—H17B0.9600
C4—H40.9300C17—H17C0.9600
N4i—Co1—N4113.17 (13)C8—C9—H9120.1
N4i—Co1—N5110.33 (8)C9—C10—C11120.4 (2)
N4—Co1—N5108.95 (7)C9—C10—H10119.8
N4i—Co1—N5i108.95 (7)C11—C10—H10119.8
N4—Co1—N5i110.33 (8)C10—C11—C12120.80 (19)
N5—Co1—N5i104.78 (9)C10—C11—H11119.6
C5—S1—C799.06 (7)C12—C11—H11119.6
C6—N1—C2118.85 (14)C11—C12—C7118.22 (16)
C6—N2—C12121.00 (12)C11—C12—N2121.74 (14)
C6—N2—C13118.47 (12)C7—C12—N2120.05 (15)
C12—N2—C13118.87 (13)N2—C13—C14116.08 (12)
C16—N3—C17110.70 (16)N2—C13—H13A108.3
C16—N3—C14112.07 (14)C14—C13—H13A108.3
C17—N3—C14114.63 (15)N2—C13—H13B108.3
C16—N3—H3A106.3C14—C13—H13B108.3
C17—N3—H3A106.3H13A—C13—H13B107.4
C14—N3—H3A106.3N3—C14—C15111.28 (14)
C18—N4—Co1172.97 (18)N3—C14—C13109.19 (13)
C19—N5—Co1160.60 (14)C15—C14—C13113.05 (14)
N1—C2—C3122.85 (19)N3—C14—H14107.7
N1—C2—H2118.6C15—C14—H14107.7
C3—C2—H2118.6C13—C14—H14107.7
C2—C3—C4118.25 (18)C14—C15—H15A109.5
C2—C3—H3120.9C14—C15—H15B109.5
C4—C3—H3120.9H15A—C15—H15B109.5
C5—C4—C3120.25 (16)C14—C15—H15C109.5
C5—C4—H4119.9H15A—C15—H15C109.5
C3—C4—H4119.9H15B—C15—H15C109.5
C4—C5—C6118.11 (17)N3—C16—H16A109.5
C4—C5—S1121.32 (13)N3—C16—H16B109.5
C6—C5—S1120.26 (13)H16A—C16—H16B109.5
N1—C6—N2117.76 (12)N3—C16—H16C109.5
N1—C6—C5121.59 (15)H16A—C16—H16C109.5
N2—C6—C5120.64 (14)H16B—C16—H16C109.5
C8—C7—C12120.16 (18)N3—C17—H17A109.5
C8—C7—S1119.17 (14)N3—C17—H17B109.5
C12—C7—S1120.58 (13)H17A—C17—H17B109.5
C9—C8—C7120.63 (19)N3—C17—H17C109.5
C9—C8—H8119.7H17A—C17—H17C109.5
C7—C8—H8119.7H17B—C17—H17C109.5
C10—C9—C8119.72 (19)N4—C18—S2178.86 (19)
C10—C9—H9120.1N5—C19—S3179.38 (17)
N4i—Co1—N5—C19−126.5 (5)S1—C7—C8—C9−173.88 (15)
N4—Co1—N5—C19108.7 (5)C7—C8—C9—C10−1.2 (3)
N5i—Co1—N5—C19−9.4 (4)C8—C9—C10—C11−1.2 (3)
C6—N1—C2—C3−3.0 (3)C9—C10—C11—C122.3 (3)
N1—C2—C3—C42.5 (3)C10—C11—C12—C7−0.9 (3)
C2—C3—C4—C50.3 (3)C10—C11—C12—N2179.22 (16)
C3—C4—C5—C6−2.4 (3)C8—C7—C12—C11−1.5 (2)
C3—C4—C5—S1171.23 (15)S1—C7—C12—C11174.88 (12)
C7—S1—C5—C4151.93 (15)C8—C7—C12—N2178.41 (14)
C7—S1—C5—C6−34.59 (15)S1—C7—C12—N2−5.2 (2)
C2—N1—C6—N2−178.41 (15)C6—N2—C12—C11147.52 (15)
C2—N1—C6—C50.7 (2)C13—N2—C12—C11−17.5 (2)
C12—N2—C6—N1−149.64 (14)C6—N2—C12—C7−32.4 (2)
C13—N2—C6—N115.5 (2)C13—N2—C12—C7162.56 (14)
C12—N2—C6—C531.2 (2)C6—N2—C13—C14−77.11 (18)
C13—N2—C6—C5−163.65 (14)C12—N2—C13—C1488.31 (17)
C4—C5—C6—N11.9 (2)C16—N3—C14—C1577.02 (19)
S1—C5—C6—N1−171.75 (12)C17—N3—C14—C15−50.2 (2)
C4—C5—C6—N2−178.98 (15)C16—N3—C14—C13−157.49 (15)
S1—C5—C6—N27.3 (2)C17—N3—C14—C1375.24 (17)
C5—S1—C7—C8−150.12 (14)N2—C13—C14—N396.79 (16)
C5—S1—C7—C1233.45 (14)N2—C13—C14—C15−138.75 (16)
C12—C7—C8—C92.6 (3)
D—H···AD—HH···AD···AD—H···A
N3—H3A···N10.911.912.7494 (18)152
Co1—N41.9411 (19)
Co1—N51.9626 (16)
N4i—Co1—N4113.17 (13)
N4—Co1—N5108.95 (7)
N4—Co1—N5i110.33 (8)
N5—Co1—N5i104.78 (9)

Symmetry code: (i) .

Table 2

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N3—H3A⋯N10.911.912.7494 (18)152
  5 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Metalloporphyrin phototoxicity.

Authors:  J Scott; J M Quirke; H J Vreman; D K Stevenson; K R Downum
Journal:  J Photochem Photobiol B       Date:  1990-11       Impact factor: 6.252

3.  Phototoxic and photoprotective effects of topical isothipendyl.

Authors:  A Moreau; A Dompmartin; A Dubreuil; D Leroy
Journal:  Photodermatol Photoimmunol Photomed       Date:  1995-04       Impact factor: 3.135

4.  Filariasis testing in a jird model: new drug leads from some old standbys.

Authors:  K E Kinnamon; D L Klayman; B T Poon; J W McCall; M T Dzimianski; S J Rowan
Journal:  Am J Trop Med Hyg       Date:  1994-12       Impact factor: 2.345

5.  The development and characterisation of porphyrin isothiocyanate-monoclonal antibody conjugates for photoimmunotherapy.

Authors:  R Hudson; M Carcenac; K Smith; L Madden; O J Clarke; A Pèlegrin; J Greenman; R W Boyle
Journal:  Br J Cancer       Date:  2005-04-25       Impact factor: 7.640

  5 in total
  1 in total

1.  idPAD: Paper Analytical Device for Presumptive Identification of Illicit Drugs.

Authors:  Tracy-Lynn E Lockwood; Tammy X Leong; Sarah L Bliese; Alec Helmke; Alex Richard; Getahun Merga; John Rorabeck; Marya Lieberman
Journal:  J Forensic Sci       Date:  2020-03-30       Impact factor: 1.832

  1 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.