Literature DB >> 21587661

11-{[2-(3-Fluoro-phen-yl)eth-yl](meth-yl)amino}-penta-cyclo-[5.4.0.0.0.0]undecan-8-one.

Samuel D Banister, Jack K Clegg, Raphy Hanani, Michael Kassiou.   

Abstract

In the title compound, C(20)H(22)FNO, the distances close to the carbonyl and amine are: N-O = 3.232 (4) Å and N-C = 2.666 (5) Å. The crystal packing is unremarkable.

Entities:  

Year:  2010        PMID: 21587661      PMCID: PMC2983207          DOI: 10.1107/S1600536810038523

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For in vitro σ-receptor affinity of tris­homocubane derivatives related to the title compound, see: Nguyen et al. (1996 ▶); Liu et al. (1999 ▶). For in vivo pharmacology of related tris­homocubanes, see: Liu et al. (2001 ▶, 2007 ▶). For rationalization of observed structure–affinity relationships of tris­homocubanes at σ-receptors using mol­ecular modeling, see: Banister et al. (2010 ▶). For X-ray crystallographic studies of biologically active tris­homocubanes related to the title compound, see: Hambley et al. (2000 ▶).

Experimental

Crystal data

C20H22FNO M = 311.39 Monoclinic, a = 10.5450 (18) Å b = 10.980 (2) Å c = 13.822 (3) Å β = 95.214 (8)° V = 1593.8 (5) Å3 Z = 4 Mo Kα radiation μ = 0.09 mm−1 T = 150 K 0.25 × 0.20 × 0.15 mm

Data collection

Bruker–Nonius APEXII FR591 diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1999 ▶) T min = 0.684, T max = 0.746 17270 measured reflections 2773 independent reflections 1566 reflections with I > 2σ(I) R int = 0.087

Refinement

R[F 2 > 2σ(F 2)] = 0.087 wR(F 2) = 0.271 S = 1.14 2773 reflections 209 parameters H-atom parameters constrained Δρmax = 0.69 e Å−3 Δρmin = −0.48 e Å−3 Data collection: APEX2 (Bruker–Nonius, 2003 ▶); cell refinement: SAINT (Bruker–Nonius, 2003); data reduction: SAINT and XPREP (Bruker–Nonius, 2003 ▶); program(s) used to solve structure: SIR97 (Altomare et al., 1999 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶), WinGX (Farrugia, 1999 ▶) and POV-RAY (Cason, 2002 ▶); software used to prepare material for publication: enCIFer (Allen et al., 2004 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810038523/rk2233sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810038523/rk2233Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C20H22FNOF(000) = 664
Mr = 311.39Dx = 1.298 Mg m3
Monoclinic, P21/nMelting point: 363.5 K
Hall symbol: -P 2ynMo Kα radiation, λ = 0.71073 Å
a = 10.5450 (18) ÅCell parameters from 2297 reflections
b = 10.980 (2) Åθ = 2.7–23.1°
c = 13.822 (3) ŵ = 0.09 mm1
β = 95.214 (8)°T = 150 K
V = 1593.8 (5) Å3Block, colourless
Z = 40.25 × 0.20 × 0.15 mm
Bruker–Nonius APEXII FR591 diffractometer2773 independent reflections
Radiation source: rotating anode1566 reflections with I > 2σ(I)
graphiteRint = 0.087
ω and φ scansθmax = 25.0°, θmin = 3.0°
Absorption correction: multi-scan (SADABS; Sheldrick, 1999)h = −12→12
Tmin = 0.684, Tmax = 0.746k = −13→12
17270 measured reflectionsl = −16→16
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.087Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.271H-atom parameters constrained
S = 1.14w = 1/[σ2(Fo2) + (0.1415P)2 + 0.2766P] where P = (Fo2 + 2Fc2)/3
2773 reflections(Δ/σ)max < 0.001
209 parametersΔρmax = 0.69 e Å3
0 restraintsΔρmin = −0.47 e Å3
Experimental. The crystal was coated in Exxon Paratone N hydrocarbon oil and mounted on a thin mohair fibre attached to a copper pin. Upon mounting on the diffractometer, the crystal was quenched to 150 K under a cold nitrogen gas stream supplied by an Oxford Cryosystems Cryostream and data were collected at this temperature.
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.5938 (5)0.3609 (4)0.6172 (5)0.0588 (17)
C20.5803 (4)0.2626 (4)0.6825 (3)0.0399 (11)
H20.54500.27440.74260.048*
C30.6209 (3)0.1482 (3)0.6545 (3)0.0250 (9)
C40.6703 (4)0.1374 (4)0.5656 (3)0.0382 (11)
H40.69880.05980.54620.046*
C50.6797 (5)0.2343 (6)0.5047 (4)0.0609 (16)
H50.71230.22200.44360.073*
C60.6442 (6)0.3449 (6)0.5291 (5)0.0680 (18)
H60.65320.41200.48690.082*
C70.6123 (5)0.0379 (4)0.7189 (3)0.0503 (13)
H7A0.61560.06450.78750.060*
H7B0.6865−0.01560.71210.060*
C80.4885 (4)−0.0351 (4)0.6931 (3)0.0304 (10)
H8A0.41620.01310.71370.036*
H8B0.4758−0.04360.62160.036*
C90.5715 (4)−0.2420 (4)0.6958 (4)0.0490 (13)
H9A0.6587−0.22490.72330.074*
H9B0.5661−0.23260.62500.074*
H9C0.5486−0.32560.71190.074*
C100.4948 (4)−0.1550 (4)0.8423 (3)0.0348 (11)
H100.5795−0.12120.86750.042*
C110.3871 (4)−0.0811 (4)0.8822 (3)0.0408 (12)
H110.39560.00940.87740.049*
C120.3700 (5)−0.1303 (4)0.9854 (4)0.0506 (13)
H120.3736−0.07021.04000.061*
C130.4537 (4)−0.2406 (5)0.9980 (3)0.0502 (14)
H130.5343−0.22861.04090.060*
C140.4724 (4)−0.2781 (4)0.8898 (3)0.0479 (13)
H140.5445−0.33640.88510.057*
C150.3636 (5)−0.3402 (5)1.0322 (4)0.0542 (14)
H15A0.4011−0.42291.03280.065*
H15B0.3314−0.32161.09570.065*
C160.2635 (4)−0.3182 (5)0.9450 (3)0.0470 (13)
H160.1859−0.37050.94510.056*
C170.3392 (4)−0.3332 (4)0.8509 (4)0.0469 (13)
H170.3429−0.41860.82620.056*
C180.2639 (4)−0.2484 (4)0.7847 (3)0.0379 (11)
C190.2540 (4)−0.1331 (5)0.8456 (3)0.0429 (12)
H190.1893−0.07200.81960.052*
C200.2372 (4)−0.1834 (4)0.9485 (3)0.0435 (12)
H200.1614−0.15570.98120.052*
N10.4837 (3)−0.1570 (3)0.7364 (2)0.0259 (8)
O10.2010 (3)−0.2730 (3)0.70829 (19)0.0431 (9)
F10.5547 (4)0.4710 (3)0.6455 (4)0.128 (2)
U11U22U33U12U13U23
C10.035 (3)0.016 (2)0.119 (5)0.004 (2)−0.030 (3)−0.007 (3)
C20.023 (2)0.053 (3)0.043 (3)−0.007 (2)−0.0052 (18)−0.016 (2)
C30.028 (2)0.026 (2)0.020 (2)−0.0055 (18)−0.0039 (16)0.0031 (16)
C40.036 (2)0.045 (3)0.033 (3)0.001 (2)0.0019 (19)−0.007 (2)
C50.044 (3)0.104 (5)0.034 (3)−0.023 (3)−0.001 (2)0.017 (3)
C60.056 (4)0.070 (4)0.074 (4)−0.032 (3)−0.019 (3)0.038 (4)
C70.053 (3)0.047 (3)0.046 (3)−0.028 (2)−0.021 (2)0.021 (2)
C80.028 (2)0.036 (2)0.026 (2)−0.0048 (19)−0.0042 (17)0.0024 (18)
C90.039 (3)0.044 (3)0.063 (3)0.007 (2)0.001 (2)−0.011 (2)
C100.031 (2)0.041 (3)0.030 (2)−0.017 (2)−0.0098 (18)0.0099 (19)
C110.046 (3)0.050 (3)0.027 (2)−0.023 (2)0.009 (2)−0.006 (2)
C120.066 (3)0.043 (3)0.040 (3)−0.015 (3)−0.009 (2)−0.005 (2)
C130.031 (2)0.090 (4)0.028 (2)−0.011 (3)−0.0097 (19)0.012 (2)
C140.040 (3)0.044 (3)0.056 (3)−0.014 (2)−0.015 (2)0.020 (2)
C150.057 (3)0.059 (3)0.045 (3)−0.008 (3)−0.006 (2)0.018 (2)
C160.046 (3)0.070 (4)0.023 (2)−0.028 (3)−0.003 (2)0.006 (2)
C170.042 (3)0.037 (3)0.058 (3)−0.016 (2)−0.013 (2)0.010 (2)
C180.033 (2)0.051 (3)0.028 (2)−0.019 (2)−0.0031 (19)0.008 (2)
C190.039 (3)0.058 (3)0.033 (3)−0.006 (2)0.005 (2)0.001 (2)
C200.039 (3)0.060 (3)0.032 (3)−0.002 (2)0.006 (2)0.008 (2)
N10.0248 (17)0.0248 (18)0.0278 (19)−0.0006 (15)0.0002 (13)0.0012 (14)
O10.0350 (16)0.070 (2)0.0232 (16)−0.0208 (16)−0.0058 (13)0.0024 (14)
F10.088 (3)0.038 (2)0.246 (6)0.0133 (19)−0.048 (3)−0.037 (2)
C1—F11.347 (6)C10—H101.0000
C1—C61.384 (9)C11—C121.551 (7)
C1—C21.422 (7)C11—C191.557 (6)
C2—C31.393 (6)C11—H111.0000
C2—H20.9500C12—C131.499 (7)
C3—C41.382 (6)C12—C201.560 (7)
C3—C71.511 (6)C12—H121.0000
C4—C51.366 (7)C13—C151.551 (7)
C4—H40.9500C13—C141.581 (7)
C5—C61.323 (8)C13—H131.0000
C5—H50.9500C14—C171.579 (6)
C6—H60.9500C14—H141.0000
C7—C81.546 (6)C15—C161.546 (6)
C7—H7A0.9900C15—H15A0.9900
C7—H7B0.9900C15—H15B0.9900
C8—N11.469 (5)C16—C201.508 (7)
C8—H8A0.9900C16—C171.595 (7)
C8—H8B0.9900C16—H161.0000
C9—N11.463 (5)C17—C181.484 (6)
C9—H9A0.9800C17—H171.0000
C9—H9B0.9800C18—O11.225 (5)
C9—H9C0.9800C18—C191.529 (7)
C10—N11.458 (5)C19—C201.550 (6)
C10—C141.531 (6)C19—H191.0000
C10—C111.538 (6)C20—H201.0000
F1—C1—C6121.4 (6)C13—C12—H12117.7
F1—C1—C2116.5 (6)C11—C12—H12117.7
C6—C1—C2122.0 (5)C20—C12—H12117.7
C3—C2—C1117.2 (4)C12—C13—C15103.6 (4)
C3—C2—H2121.4C12—C13—C14102.9 (3)
C1—C2—H2121.4C15—C13—C14103.7 (4)
C4—C3—C2118.3 (4)C12—C13—H13115.0
C4—C3—C7120.2 (4)C15—C13—H13115.0
C2—C3—C7121.5 (4)C14—C13—H13115.0
C5—C4—C3122.4 (5)C10—C14—C17111.0 (3)
C5—C4—H4118.8C10—C14—C13102.3 (4)
C3—C4—H4118.8C17—C14—C13103.8 (4)
C6—C5—C4121.3 (5)C10—C14—H14113.0
C6—C5—H5119.3C17—C14—H14113.0
C4—C5—H5119.3C13—C14—H14113.0
C5—C6—C1118.7 (5)C16—C15—C1392.6 (3)
C5—C6—H6120.6C16—C15—H15A113.2
C1—C6—H6120.6C13—C15—H15A113.2
C3—C7—C8112.0 (3)C16—C15—H15B113.2
C3—C7—H7A109.2C13—C15—H15B113.2
C8—C7—H7A109.2H15A—C15—H15B110.5
C3—C7—H7B109.2C20—C16—C15104.1 (4)
C8—C7—H7B109.2C20—C16—C17103.6 (4)
H7A—C7—H7B107.9C15—C16—C17105.2 (4)
N1—C8—C7116.0 (3)C20—C16—H16114.2
N1—C8—H8A108.3C15—C16—H16114.2
C7—C8—H8A108.3C17—C16—H16114.2
N1—C8—H8B108.3C18—C17—C14112.3 (3)
C7—C8—H8B108.3C18—C17—C1699.1 (4)
H8A—C8—H8B107.4C14—C17—C16100.2 (4)
N1—C9—H9A109.5C18—C17—H17114.4
N1—C9—H9B109.5C14—C17—H17114.4
H9A—C9—H9B109.5C16—C17—H17114.4
N1—C9—H9C109.5O1—C18—C17127.6 (4)
H9A—C9—H9C109.5O1—C18—C19126.7 (4)
H9B—C9—H9C109.5C17—C18—C19103.9 (4)
N1—C10—C14114.6 (3)C18—C19—C20103.2 (4)
N1—C10—C11112.0 (3)C18—C19—C11112.2 (4)
C14—C10—C1199.4 (3)C20—C19—C1190.4 (3)
N1—C10—H10110.1C18—C19—H19115.9
C14—C10—H10110.1C20—C19—H19115.9
C11—C10—H10110.1C11—C19—H19115.9
C10—C11—C12107.3 (4)C16—C20—C19106.5 (4)
C10—C11—C19111.3 (3)C16—C20—C12102.4 (4)
C12—C11—C1989.7 (3)C19—C20—C1289.6 (3)
C10—C11—H11115.2C16—C20—H20118.0
C12—C11—H11115.2C19—C20—H20118.0
C19—C11—H11115.2C12—C20—H20118.0
C13—C12—C11105.8 (4)C10—N1—C9113.5 (3)
C13—C12—C20103.8 (4)C10—N1—C8113.1 (3)
C11—C12—C2090.3 (3)C9—N1—C8112.3 (3)
F1—C1—C2—C3−179.7 (4)C13—C14—C17—C18104.4 (4)
C6—C1—C2—C30.5 (6)C10—C14—C17—C16−109.2 (4)
C1—C2—C3—C4−0.6 (6)C13—C14—C17—C160.0 (4)
C1—C2—C3—C7179.2 (4)C20—C16—C17—C18−41.0 (4)
C2—C3—C4—C5−0.4 (6)C15—C16—C17—C18−150.0 (4)
C7—C3—C4—C5179.8 (4)C20—C16—C17—C1473.7 (4)
C3—C4—C5—C61.6 (7)C15—C16—C17—C14−35.3 (5)
C4—C5—C6—C1−1.6 (8)C14—C17—C18—O1137.7 (5)
F1—C1—C6—C5−179.2 (5)C16—C17—C18—O1−117.2 (5)
C2—C1—C6—C50.6 (8)C14—C17—C18—C19−56.7 (5)
C4—C3—C7—C8−85.8 (5)C16—C17—C18—C1948.4 (4)
C2—C3—C7—C894.4 (5)O1—C18—C19—C20127.7 (4)
C3—C7—C8—N1167.1 (4)C17—C18—C19—C20−38.0 (4)
N1—C10—C11—C12154.8 (3)O1—C18—C19—C11−136.4 (4)
C14—C10—C11—C1233.3 (4)C17—C18—C19—C1158.0 (4)
N1—C10—C11—C1958.2 (4)C10—C11—C19—C183.5 (5)
C14—C10—C11—C19−63.3 (4)C12—C11—C19—C18−105.0 (4)
C10—C11—C12—C13−7.4 (5)C10—C11—C19—C20108.1 (4)
C19—C11—C12—C13104.9 (4)C12—C11—C19—C20−0.5 (4)
C10—C11—C12—C20−111.8 (4)C15—C16—C20—C19128.1 (4)
C19—C11—C12—C200.5 (4)C17—C16—C20—C1918.3 (4)
C11—C12—C13—C15−128.9 (4)C15—C16—C20—C1234.8 (4)
C20—C12—C13—C15−34.7 (4)C17—C16—C20—C12−75.0 (4)
C11—C12—C13—C14−21.1 (4)C18—C19—C20—C1610.6 (4)
C20—C12—C13—C1473.1 (4)C11—C19—C20—C16−102.3 (4)
N1—C10—C14—C17−55.1 (5)C18—C19—C20—C12113.4 (4)
C11—C10—C14—C1764.4 (5)C11—C19—C20—C120.5 (4)
N1—C10—C14—C13−165.3 (3)C13—C12—C20—C160.0 (4)
C11—C10—C14—C13−45.8 (4)C11—C12—C20—C16106.3 (4)
C12—C13—C14—C1042.8 (4)C13—C12—C20—C19−106.8 (4)
C15—C13—C14—C10150.5 (4)C11—C12—C20—C19−0.5 (4)
C12—C13—C14—C17−72.8 (4)C14—C10—N1—C9−58.3 (5)
C15—C13—C14—C1734.9 (5)C11—C10—N1—C9−170.6 (3)
C12—C13—C15—C1653.3 (4)C14—C10—N1—C8172.2 (3)
C14—C13—C15—C16−53.9 (4)C11—C10—N1—C859.9 (4)
C13—C15—C16—C20−53.6 (4)C7—C8—N1—C1061.1 (5)
C13—C15—C16—C1755.0 (4)C7—C8—N1—C9−69.0 (5)
C10—C14—C17—C18−4.9 (6)
  5 in total

1.  Trishomocubanes: novel sigma-receptor ligands modulate amphetamine-stimulated [3H]dopamine release.

Authors:  X Liu; S Nuwayhid; M J Christie; M Kassiou; L L Werling
Journal:  Eur J Pharmacol       Date:  2001-06-22       Impact factor: 4.432

2.  Trishomocubanes: novel sigma ligands modulate cocaine-induced behavioural effects.

Authors:  Xiang Liu; Samuel D Banister; MacDonald J Christie; Richard Banati; Steve Meikle; Mark J Coster; Michael Kassiou
Journal:  Eur J Pharmacol       Date:  2006-10-18       Impact factor: 4.432

3.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

4.  Oxo-bridged isomers of aza-trishomocubane sigma (sigma) receptor ligands: Synthesis, in vitro binding, and molecular modeling.

Authors:  Samuel D Banister; Iman A Moussa; Meredith J T Jordan; Mark J Coster; Michael Kassiou
Journal:  Bioorg Med Chem Lett       Date:  2009-11-12       Impact factor: 2.823

5.  Comparison of binding parameters of sigma 1 and sigma 2 binding sites in rat and guinea pig brain membranes: novel subtype-selective trishomocubanes.

Authors:  V H Nguyen; M Kassiou; G A Johnston; M J Christie
Journal:  Eur J Pharmacol       Date:  1996-09-12       Impact factor: 4.432

  5 in total

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