| Literature DB >> 21587648 |
Abstract
During the formation of the title compound, C(5)H(7)N(2) (+)·C(6)H(2)N(3)O(7) (-), a phenolic proton is transferred to the pyridine N atom. In the crystal structure, the ions are linked by inter-molecular N-H⋯O and N-H⋯(O,O) hydrogen bonds into layers running parallel to (100). These layers are connected by weak π-π stacking inter-actions between symmetry-related pyridine and picric benzene rings with a centroid-centroid distance of 3.758 (2) Å, forming a three-dimensional network.Entities:
Year: 2010 PMID: 21587648 PMCID: PMC2983382 DOI: 10.1107/S1600536810037190
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C5H7N2+·C6H2N3O7− | |
| Monoclinic, | Mo |
| Hall symbol: -P 2yn | Cell parameters from 1100 reflections |
| θ = 2.3–20.4° | |
| µ = 0.14 mm−1 | |
| β = 102.117 (2)° | Needle, yellow |
| 0.45 × 0.05 × 0.02 mm | |
| Bruker SMART CCD diffractometer | 2804 independent reflections |
| Radiation source: fine-focus sealed tube | 1391 reflections with |
| graphite | |
| φ and ω scans | θmax = 27.0°, θmin = 2.3° |
| Absorption correction: multi-scan ( | |
| 14192 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 2804 reflections | (Δ/σ)max < 0.001 |
| 217 parameters | Δρmax = 0.34 e Å−3 |
| 0 restraints | Δρmin = −0.24 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| C1 | 0.8262 (3) | 0.49045 (18) | 0.2590 (2) | 0.0390 (7) | |
| C2 | 0.8816 (3) | 0.45022 (19) | 0.1686 (2) | 0.0401 (7) | |
| H2 | 0.8614 | 0.4819 | 0.0973 | 0.048* | |
| C3 | 0.9673 (3) | 0.36279 (18) | 0.1827 (2) | 0.0378 (7) | |
| C4 | 1.0039 (3) | 0.31637 (19) | 0.2881 (2) | 0.0388 (7) | |
| H4 | 1.0636 | 0.2577 | 0.2967 | 0.047* | |
| C5 | 0.9518 (3) | 0.35703 (19) | 0.3805 (2) | 0.0388 (7) | |
| C6 | 0.8524 (4) | 0.4466 (2) | 0.3728 (2) | 0.0428 (7) | |
| C7 | 0.5593 (4) | 0.6203 (2) | 0.7181 (2) | 0.0449 (7) | |
| C8 | 0.5870 (4) | 0.5718 (2) | 0.8241 (2) | 0.0474 (8) | |
| H8 | 0.5482 | 0.5994 | 0.8855 | 0.057* | |
| C9 | 0.6702 (4) | 0.4844 (2) | 0.8392 (3) | 0.0532 (8) | |
| H9 | 0.6866 | 0.4527 | 0.9104 | 0.064* | |
| C10 | 0.7300 (4) | 0.4426 (2) | 0.7507 (3) | 0.0531 (8) | |
| H10 | 0.7872 | 0.3831 | 0.7605 | 0.064* | |
| C11 | 0.6221 (4) | 0.5750 (2) | 0.6304 (2) | 0.0470 (8) | |
| H11 | 0.6070 | 0.6043 | 0.5578 | 0.056* | |
| N1 | 0.7366 (3) | 0.58418 (19) | 0.2352 (3) | 0.0562 (7) | |
| N2 | 1.0162 (3) | 0.31865 (19) | 0.0837 (2) | 0.0498 (7) | |
| N3 | 0.9978 (4) | 0.3051 (2) | 0.4890 (2) | 0.0569 (7) | |
| N4 | 0.4760 (4) | 0.7061 (2) | 0.7014 (3) | 0.0684 (9) | |
| N5 | 0.7032 (3) | 0.4902 (2) | 0.6502 (2) | 0.0511 (7) | |
| O1 | 0.6984 (4) | 0.61237 (17) | 0.1355 (3) | 0.0962 (10) | |
| O2 | 0.6942 (4) | 0.6267 (2) | 0.3121 (2) | 0.1179 (12) | |
| O3 | 0.9816 (3) | 0.36138 (17) | −0.00931 (18) | 0.0755 (8) | |
| O4 | 1.0901 (3) | 0.24022 (17) | 0.09581 (19) | 0.0736 (7) | |
| O5 | 1.1054 (3) | 0.24169 (18) | 0.49917 (19) | 0.0764 (8) | |
| O6 | 0.9316 (3) | 0.3268 (2) | 0.5696 (2) | 0.0916 (9) | |
| O7 | 0.7949 (3) | 0.48236 (16) | 0.45224 (19) | 0.0770 (8) | |
| H4A | 0.455 (5) | 0.730 (3) | 0.634 (3) | 0.092* | |
| H4B | 0.436 (5) | 0.731 (3) | 0.757 (3) | 0.092* | |
| H5 | 0.749 (4) | 0.465 (2) | 0.592 (3) | 0.092* |
| C1 | 0.0361 (16) | 0.0317 (15) | 0.0490 (17) | 0.0008 (12) | 0.0087 (14) | −0.0052 (13) |
| C2 | 0.0394 (17) | 0.0427 (16) | 0.0376 (16) | −0.0036 (14) | 0.0069 (13) | 0.0015 (13) |
| C3 | 0.0414 (17) | 0.0381 (16) | 0.0369 (16) | −0.0046 (13) | 0.0147 (13) | −0.0068 (12) |
| C4 | 0.0371 (16) | 0.0341 (15) | 0.0453 (16) | −0.0027 (13) | 0.0085 (13) | −0.0026 (13) |
| C5 | 0.0419 (17) | 0.0425 (16) | 0.0319 (15) | −0.0109 (13) | 0.0075 (13) | 0.0019 (12) |
| C6 | 0.0417 (18) | 0.0483 (17) | 0.0422 (17) | −0.0090 (14) | 0.0171 (14) | −0.0127 (14) |
| C7 | 0.0475 (18) | 0.0477 (18) | 0.0402 (17) | −0.0098 (15) | 0.0106 (14) | −0.0062 (14) |
| C8 | 0.0508 (19) | 0.0570 (19) | 0.0380 (17) | −0.0061 (16) | 0.0178 (14) | −0.0072 (14) |
| C9 | 0.056 (2) | 0.065 (2) | 0.0385 (17) | −0.0058 (17) | 0.0098 (16) | −0.0019 (15) |
| C10 | 0.049 (2) | 0.057 (2) | 0.0526 (19) | −0.0070 (15) | 0.0094 (16) | −0.0019 (16) |
| C11 | 0.0470 (19) | 0.061 (2) | 0.0333 (16) | −0.0152 (16) | 0.0095 (14) | −0.0029 (14) |
| N1 | 0.0469 (16) | 0.0525 (17) | 0.0693 (19) | 0.0071 (13) | 0.0129 (15) | −0.0143 (15) |
| N2 | 0.0528 (17) | 0.0548 (17) | 0.0453 (16) | −0.0010 (13) | 0.0183 (13) | −0.0087 (13) |
| N3 | 0.0603 (19) | 0.0655 (18) | 0.0432 (16) | −0.0104 (16) | 0.0070 (14) | 0.0083 (14) |
| N4 | 0.095 (2) | 0.0606 (19) | 0.0508 (18) | 0.0098 (17) | 0.0180 (17) | 0.0020 (15) |
| N5 | 0.0461 (17) | 0.0593 (17) | 0.0514 (18) | −0.0099 (13) | 0.0184 (13) | −0.0191 (14) |
| O1 | 0.127 (2) | 0.0793 (18) | 0.094 (2) | 0.0456 (17) | 0.0484 (19) | 0.0347 (15) |
| O2 | 0.144 (3) | 0.109 (2) | 0.087 (2) | 0.074 (2) | −0.0071 (19) | −0.0394 (17) |
| O3 | 0.100 (2) | 0.0951 (18) | 0.0367 (12) | 0.0179 (15) | 0.0255 (12) | 0.0006 (12) |
| O4 | 0.0958 (19) | 0.0592 (14) | 0.0733 (16) | 0.0264 (14) | 0.0347 (14) | −0.0095 (12) |
| O5 | 0.098 (2) | 0.0659 (16) | 0.0572 (15) | 0.0144 (15) | −0.0020 (14) | 0.0129 (12) |
| O6 | 0.094 (2) | 0.136 (2) | 0.0549 (15) | 0.0175 (17) | 0.0390 (15) | 0.0328 (15) |
| O7 | 0.106 (2) | 0.0784 (16) | 0.0612 (15) | 0.0045 (14) | 0.0509 (15) | −0.0147 (12) |
| C1—C2 | 1.361 (3) | C8—H8 | 0.9300 |
| C1—C6 | 1.446 (4) | C9—C10 | 1.369 (4) |
| C1—N1 | 1.468 (3) | C9—H9 | 0.9300 |
| C2—C3 | 1.373 (3) | C10—N5 | 1.329 (4) |
| C2—H2 | 0.9300 | C10—H10 | 0.9300 |
| C3—C4 | 1.372 (4) | C11—N5 | 1.328 (4) |
| C3—N2 | 1.445 (3) | C11—H11 | 0.9300 |
| C4—C5 | 1.371 (3) | N1—O2 | 1.190 (3) |
| C4—H4 | 0.9300 | N1—O1 | 1.216 (3) |
| C5—N3 | 1.443 (3) | N2—O4 | 1.220 (3) |
| C5—C6 | 1.457 (4) | N2—O3 | 1.223 (3) |
| C6—O7 | 1.236 (3) | N3—O5 | 1.222 (3) |
| C7—N4 | 1.345 (4) | N3—O6 | 1.229 (3) |
| C7—C8 | 1.392 (4) | N4—H4A | 0.85 (4) |
| C7—C11 | 1.394 (4) | N4—H4B | 0.86 (4) |
| C8—C9 | 1.364 (4) | N5—H5 | 0.91 (3) |
| C2—C1—C6 | 123.8 (2) | C8—C9—C10 | 120.8 (3) |
| C2—C1—N1 | 115.8 (3) | C8—C9—H9 | 119.6 |
| C6—C1—N1 | 120.4 (3) | C10—C9—H9 | 119.6 |
| C1—C2—C3 | 120.0 (3) | N5—C10—C9 | 117.5 (3) |
| C1—C2—H2 | 120.0 | N5—C10—H10 | 121.2 |
| C3—C2—H2 | 120.0 | C9—C10—H10 | 121.2 |
| C4—C3—C2 | 121.1 (2) | N5—C11—C7 | 120.2 (3) |
| C4—C3—N2 | 120.0 (2) | N5—C11—H11 | 119.9 |
| C2—C3—N2 | 118.9 (2) | C7—C11—H11 | 119.9 |
| C5—C4—C3 | 119.5 (3) | O2—N1—O1 | 122.0 (3) |
| C5—C4—H4 | 120.2 | O2—N1—C1 | 119.3 (3) |
| C3—C4—H4 | 120.2 | O1—N1—C1 | 118.4 (3) |
| C4—C5—N3 | 116.4 (3) | O4—N2—O3 | 122.4 (2) |
| C4—C5—C6 | 123.4 (2) | O4—N2—C3 | 118.9 (3) |
| N3—C5—C6 | 120.2 (3) | O3—N2—C3 | 118.6 (3) |
| O7—C6—C1 | 122.6 (3) | O5—N3—O6 | 121.5 (3) |
| O7—C6—C5 | 125.4 (3) | O5—N3—C5 | 118.8 (3) |
| C1—C6—C5 | 112.0 (2) | O6—N3—C5 | 119.7 (3) |
| N4—C7—C8 | 121.6 (3) | C7—N4—H4A | 118 (3) |
| N4—C7—C11 | 122.0 (3) | C7—N4—H4B | 119 (3) |
| C8—C7—C11 | 116.4 (3) | H4A—N4—H4B | 122 (4) |
| C9—C8—C7 | 120.8 (3) | C11—N5—C10 | 124.2 (3) |
| C9—C8—H8 | 119.6 | C11—N5—H5 | 117 (2) |
| C7—C8—H8 | 119.6 | C10—N5—H5 | 118 (2) |
| C6—C1—C2—C3 | 0.3 (4) | C7—C8—C9—C10 | 0.6 (4) |
| N1—C1—C2—C3 | 179.8 (2) | C8—C9—C10—N5 | −0.2 (4) |
| C1—C2—C3—C4 | −2.4 (4) | N4—C7—C11—N5 | −179.8 (3) |
| C1—C2—C3—N2 | 176.4 (2) | C8—C7—C11—N5 | 0.0 (4) |
| C2—C3—C4—C5 | 1.1 (4) | C2—C1—N1—O2 | −175.1 (3) |
| N2—C3—C4—C5 | −177.7 (2) | C6—C1—N1—O2 | 4.4 (4) |
| C3—C4—C5—N3 | −178.8 (2) | C2—C1—N1—O1 | 9.8 (4) |
| C3—C4—C5—C6 | 2.4 (4) | C6—C1—N1—O1 | −170.7 (3) |
| C2—C1—C6—O7 | −176.9 (3) | C4—C3—N2—O4 | −0.1 (4) |
| N1—C1—C6—O7 | 3.6 (4) | C2—C3—N2—O4 | −178.9 (3) |
| C2—C1—C6—C5 | 2.8 (4) | C4—C3—N2—O3 | 179.8 (3) |
| N1—C1—C6—C5 | −176.7 (2) | C2—C3—N2—O3 | 1.0 (4) |
| C4—C5—C6—O7 | 175.5 (3) | C4—C5—N3—O5 | 14.6 (4) |
| N3—C5—C6—O7 | −3.2 (4) | C6—C5—N3—O5 | −166.5 (3) |
| C4—C5—C6—C1 | −4.1 (4) | C4—C5—N3—O6 | −167.1 (3) |
| N3—C5—C6—C1 | 177.1 (2) | C6—C5—N3—O6 | 11.8 (4) |
| N4—C7—C8—C9 | 179.3 (3) | C7—C11—N5—C10 | 0.4 (4) |
| C11—C7—C8—C9 | −0.5 (4) | C9—C10—N5—C11 | −0.3 (4) |
| H··· | ||||
| N5—H5···O7 | 0.91 (3) | 1.79 (3) | 2.607 (3) | 148 (3) |
| N5—H5···O6 | 0.91 (3) | 2.46 (3) | 3.179 (4) | 136 (3) |
| N4—H4B···O6i | 0.86 (4) | 2.48 (4) | 3.119 (4) | 132 (3) |
| N4—H4A···O3ii | 0.85 (4) | 2.44 (4) | 3.172 (4) | 145 (3) |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| N5—H5⋯O7 | 0.91 (3) | 1.79 (3) | 2.607 (3) | 148 (3) |
| N5—H5⋯O6 | 0.91 (3) | 2.46 (3) | 3.179 (4) | 136 (3) |
| N4—H4 | 0.86 (4) | 2.48 (4) | 3.119 (4) | 132 (3) |
| N4—H4 | 0.85 (4) | 2.44 (4) | 3.172 (4) | 145 (3) |
Symmetry codes: (i) ; (ii) .