Literature DB >> 21587648

3-Amino-pyridinium picrate.

Yan-Jun Li1.   

Abstract

During the formation of the title compound, C(5)H(7)N(2) (+)·C(6)H(2)N(3)O(7) (-), a phenolic proton is transferred to the pyridine N atom. In the crystal structure, the ions are linked by inter-molecular N-H⋯O and N-H⋯(O,O) hydrogen bonds into layers running parallel to (100). These layers are connected by weak π-π stacking inter-actions between symmetry-related pyridine and picric benzene rings with a centroid-centroid distance of 3.758 (2) Å, forming a three-dimensional network.

Entities:  

Year:  2010        PMID: 21587648      PMCID: PMC2983382          DOI: 10.1107/S1600536810037190

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For applications of picric acid derivatives, see: Pascard et al. (1982 ▶); Pearson et al. (2007 ▶); Shakir et al. (2009 ▶). For a related structure, see: Harrison et al. (2007 ▶).

Experimental

Crystal data

C5H7N2 +·C6H2N3O7 − M = 323.23 Monoclinic, a = 8.2174 (8) Å b = 13.5842 (13) Å c = 11.8218 (12) Å β = 102.117 (2)° V = 1290.2 (2) Å3 Z = 4 Mo Kα radiation μ = 0.14 mm−1 T = 297 K 0.45 × 0.05 × 0.02 mm

Data collection

Bruker SMART CCD diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.939, T max = 0.997 14192 measured reflections 2804 independent reflections 1391 reflections with I > 2σ(I) R int = 0.072

Refinement

R[F 2 > 2σ(F 2)] = 0.060 wR(F 2) = 0.162 S = 1.03 2804 reflections 217 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.34 e Å−3 Δρmin = −0.24 e Å−3 Data collection: SMART (Bruker, 2001 ▶); cell refinement: SAINT (Bruker, 2001 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: PLATON (Spek, 2009 ▶); software used to prepare material for publication: SHELXTL (Sheldrick, 2008 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536810037190/lh5128sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810037190/lh5128Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C5H7N2+·C6H2N3O7F(000) = 664
Mr = 323.23Dx = 1.664 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 1100 reflections
a = 8.2174 (8) Åθ = 2.3–20.4°
b = 13.5842 (13) ŵ = 0.14 mm1
c = 11.8218 (12) ÅT = 297 K
β = 102.117 (2)°Needle, yellow
V = 1290.2 (2) Å30.45 × 0.05 × 0.02 mm
Z = 4
Bruker SMART CCD diffractometer2804 independent reflections
Radiation source: fine-focus sealed tube1391 reflections with I > 2σ(I)
graphiteRint = 0.072
φ and ω scansθmax = 27.0°, θmin = 2.3°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −10→10
Tmin = 0.939, Tmax = 0.997k = −17→17
14192 measured reflectionsl = −15→15
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.060Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.162H atoms treated by a mixture of independent and constrained refinement
S = 1.03w = 1/[σ2(Fo2) + (0.0663P)2 + 0.0975P] where P = (Fo2 + 2Fc2)/3
2804 reflections(Δ/σ)max < 0.001
217 parametersΔρmax = 0.34 e Å3
0 restraintsΔρmin = −0.24 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.8262 (3)0.49045 (18)0.2590 (2)0.0390 (7)
C20.8816 (3)0.45022 (19)0.1686 (2)0.0401 (7)
H20.86140.48190.09730.048*
C30.9673 (3)0.36279 (18)0.1827 (2)0.0378 (7)
C41.0039 (3)0.31637 (19)0.2881 (2)0.0388 (7)
H41.06360.25770.29670.047*
C50.9518 (3)0.35703 (19)0.3805 (2)0.0388 (7)
C60.8524 (4)0.4466 (2)0.3728 (2)0.0428 (7)
C70.5593 (4)0.6203 (2)0.7181 (2)0.0449 (7)
C80.5870 (4)0.5718 (2)0.8241 (2)0.0474 (8)
H80.54820.59940.88550.057*
C90.6702 (4)0.4844 (2)0.8392 (3)0.0532 (8)
H90.68660.45270.91040.064*
C100.7300 (4)0.4426 (2)0.7507 (3)0.0531 (8)
H100.78720.38310.76050.064*
C110.6221 (4)0.5750 (2)0.6304 (2)0.0470 (8)
H110.60700.60430.55780.056*
N10.7366 (3)0.58418 (19)0.2352 (3)0.0562 (7)
N21.0162 (3)0.31865 (19)0.0837 (2)0.0498 (7)
N30.9978 (4)0.3051 (2)0.4890 (2)0.0569 (7)
N40.4760 (4)0.7061 (2)0.7014 (3)0.0684 (9)
N50.7032 (3)0.4902 (2)0.6502 (2)0.0511 (7)
O10.6984 (4)0.61237 (17)0.1355 (3)0.0962 (10)
O20.6942 (4)0.6267 (2)0.3121 (2)0.1179 (12)
O30.9816 (3)0.36138 (17)−0.00931 (18)0.0755 (8)
O41.0901 (3)0.24022 (17)0.09581 (19)0.0736 (7)
O51.1054 (3)0.24169 (18)0.49917 (19)0.0764 (8)
O60.9316 (3)0.3268 (2)0.5696 (2)0.0916 (9)
O70.7949 (3)0.48236 (16)0.45224 (19)0.0770 (8)
H4A0.455 (5)0.730 (3)0.634 (3)0.092*
H4B0.436 (5)0.731 (3)0.757 (3)0.092*
H50.749 (4)0.465 (2)0.592 (3)0.092*
U11U22U33U12U13U23
C10.0361 (16)0.0317 (15)0.0490 (17)0.0008 (12)0.0087 (14)−0.0052 (13)
C20.0394 (17)0.0427 (16)0.0376 (16)−0.0036 (14)0.0069 (13)0.0015 (13)
C30.0414 (17)0.0381 (16)0.0369 (16)−0.0046 (13)0.0147 (13)−0.0068 (12)
C40.0371 (16)0.0341 (15)0.0453 (16)−0.0027 (13)0.0085 (13)−0.0026 (13)
C50.0419 (17)0.0425 (16)0.0319 (15)−0.0109 (13)0.0075 (13)0.0019 (12)
C60.0417 (18)0.0483 (17)0.0422 (17)−0.0090 (14)0.0171 (14)−0.0127 (14)
C70.0475 (18)0.0477 (18)0.0402 (17)−0.0098 (15)0.0106 (14)−0.0062 (14)
C80.0508 (19)0.0570 (19)0.0380 (17)−0.0061 (16)0.0178 (14)−0.0072 (14)
C90.056 (2)0.065 (2)0.0385 (17)−0.0058 (17)0.0098 (16)−0.0019 (15)
C100.049 (2)0.057 (2)0.0526 (19)−0.0070 (15)0.0094 (16)−0.0019 (16)
C110.0470 (19)0.061 (2)0.0333 (16)−0.0152 (16)0.0095 (14)−0.0029 (14)
N10.0469 (16)0.0525 (17)0.0693 (19)0.0071 (13)0.0129 (15)−0.0143 (15)
N20.0528 (17)0.0548 (17)0.0453 (16)−0.0010 (13)0.0183 (13)−0.0087 (13)
N30.0603 (19)0.0655 (18)0.0432 (16)−0.0104 (16)0.0070 (14)0.0083 (14)
N40.095 (2)0.0606 (19)0.0508 (18)0.0098 (17)0.0180 (17)0.0020 (15)
N50.0461 (17)0.0593 (17)0.0514 (18)−0.0099 (13)0.0184 (13)−0.0191 (14)
O10.127 (2)0.0793 (18)0.094 (2)0.0456 (17)0.0484 (19)0.0347 (15)
O20.144 (3)0.109 (2)0.087 (2)0.074 (2)−0.0071 (19)−0.0394 (17)
O30.100 (2)0.0951 (18)0.0367 (12)0.0179 (15)0.0255 (12)0.0006 (12)
O40.0958 (19)0.0592 (14)0.0733 (16)0.0264 (14)0.0347 (14)−0.0095 (12)
O50.098 (2)0.0659 (16)0.0572 (15)0.0144 (15)−0.0020 (14)0.0129 (12)
O60.094 (2)0.136 (2)0.0549 (15)0.0175 (17)0.0390 (15)0.0328 (15)
O70.106 (2)0.0784 (16)0.0612 (15)0.0045 (14)0.0509 (15)−0.0147 (12)
C1—C21.361 (3)C8—H80.9300
C1—C61.446 (4)C9—C101.369 (4)
C1—N11.468 (3)C9—H90.9300
C2—C31.373 (3)C10—N51.329 (4)
C2—H20.9300C10—H100.9300
C3—C41.372 (4)C11—N51.328 (4)
C3—N21.445 (3)C11—H110.9300
C4—C51.371 (3)N1—O21.190 (3)
C4—H40.9300N1—O11.216 (3)
C5—N31.443 (3)N2—O41.220 (3)
C5—C61.457 (4)N2—O31.223 (3)
C6—O71.236 (3)N3—O51.222 (3)
C7—N41.345 (4)N3—O61.229 (3)
C7—C81.392 (4)N4—H4A0.85 (4)
C7—C111.394 (4)N4—H4B0.86 (4)
C8—C91.364 (4)N5—H50.91 (3)
C2—C1—C6123.8 (2)C8—C9—C10120.8 (3)
C2—C1—N1115.8 (3)C8—C9—H9119.6
C6—C1—N1120.4 (3)C10—C9—H9119.6
C1—C2—C3120.0 (3)N5—C10—C9117.5 (3)
C1—C2—H2120.0N5—C10—H10121.2
C3—C2—H2120.0C9—C10—H10121.2
C4—C3—C2121.1 (2)N5—C11—C7120.2 (3)
C4—C3—N2120.0 (2)N5—C11—H11119.9
C2—C3—N2118.9 (2)C7—C11—H11119.9
C5—C4—C3119.5 (3)O2—N1—O1122.0 (3)
C5—C4—H4120.2O2—N1—C1119.3 (3)
C3—C4—H4120.2O1—N1—C1118.4 (3)
C4—C5—N3116.4 (3)O4—N2—O3122.4 (2)
C4—C5—C6123.4 (2)O4—N2—C3118.9 (3)
N3—C5—C6120.2 (3)O3—N2—C3118.6 (3)
O7—C6—C1122.6 (3)O5—N3—O6121.5 (3)
O7—C6—C5125.4 (3)O5—N3—C5118.8 (3)
C1—C6—C5112.0 (2)O6—N3—C5119.7 (3)
N4—C7—C8121.6 (3)C7—N4—H4A118 (3)
N4—C7—C11122.0 (3)C7—N4—H4B119 (3)
C8—C7—C11116.4 (3)H4A—N4—H4B122 (4)
C9—C8—C7120.8 (3)C11—N5—C10124.2 (3)
C9—C8—H8119.6C11—N5—H5117 (2)
C7—C8—H8119.6C10—N5—H5118 (2)
C6—C1—C2—C30.3 (4)C7—C8—C9—C100.6 (4)
N1—C1—C2—C3179.8 (2)C8—C9—C10—N5−0.2 (4)
C1—C2—C3—C4−2.4 (4)N4—C7—C11—N5−179.8 (3)
C1—C2—C3—N2176.4 (2)C8—C7—C11—N50.0 (4)
C2—C3—C4—C51.1 (4)C2—C1—N1—O2−175.1 (3)
N2—C3—C4—C5−177.7 (2)C6—C1—N1—O24.4 (4)
C3—C4—C5—N3−178.8 (2)C2—C1—N1—O19.8 (4)
C3—C4—C5—C62.4 (4)C6—C1—N1—O1−170.7 (3)
C2—C1—C6—O7−176.9 (3)C4—C3—N2—O4−0.1 (4)
N1—C1—C6—O73.6 (4)C2—C3—N2—O4−178.9 (3)
C2—C1—C6—C52.8 (4)C4—C3—N2—O3179.8 (3)
N1—C1—C6—C5−176.7 (2)C2—C3—N2—O31.0 (4)
C4—C5—C6—O7175.5 (3)C4—C5—N3—O514.6 (4)
N3—C5—C6—O7−3.2 (4)C6—C5—N3—O5−166.5 (3)
C4—C5—C6—C1−4.1 (4)C4—C5—N3—O6−167.1 (3)
N3—C5—C6—C1177.1 (2)C6—C5—N3—O611.8 (4)
N4—C7—C8—C9179.3 (3)C7—C11—N5—C100.4 (4)
C11—C7—C8—C9−0.5 (4)C9—C10—N5—C11−0.3 (4)
D—H···AD—HH···AD···AD—H···A
N5—H5···O70.91 (3)1.79 (3)2.607 (3)148 (3)
N5—H5···O60.91 (3)2.46 (3)3.179 (4)136 (3)
N4—H4B···O6i0.86 (4)2.48 (4)3.119 (4)132 (3)
N4—H4A···O3ii0.85 (4)2.44 (4)3.172 (4)145 (3)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N5—H5⋯O70.91 (3)1.79 (3)2.607 (3)148 (3)
N5—H5⋯O60.91 (3)2.46 (3)3.179 (4)136 (3)
N4—H4B⋯O6i0.86 (4)2.48 (4)3.119 (4)132 (3)
N4—H4A⋯O3ii0.85 (4)2.44 (4)3.172 (4)145 (3)

Symmetry codes: (i) ; (ii) .

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