Literature DB >> 21587635

1-Benzoyl-3,6-diphenyl-1,4-dihydro-1,2,4,5-tetra-zine.

Feng Xu1, Zhen-Zhen Yang, Xiao-Fang Chen, Wen-Xiu Zheng.   

Abstract

In the title compound, C(21)H(16)N(4)O, the central tetra-zine ring adopts an unsymmetrical boat conformation with the two N atoms as the bow and stern. The crystal packing is stabilized by inter-molecular N-H-O hydrogen bonds.

Entities:  

Year:  2010        PMID: 21587635      PMCID: PMC2983408          DOI: 10.1107/S1600536810038067

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related structures, see: Xu et al. (2010 ▶); Hu et al. (2004 ▶); Rao et al. (2006 ▶). For applications of 1,2,4,5-tetra­zine derivatives, see: Sauer et al. (1996 ▶).

Experimental

Crystal data

C21H16N4O M = 340.38 Orthorhombic, a = 7.1100 (19) Å b = 12.115 (3) Å c = 19.884 (6) Å V = 1712.7 (8) Å3 Z = 4 Mo Kα radiation μ = 0.09 mm−1 T = 93 K 0.43 × 0.27 × 0.27 mm

Data collection

Rigaku AFC10/Saturn724+ diffractometer 13708 measured reflections 2254 independent reflections 2128 reflections with I > 2σ(I) R int = 0.032

Refinement

R[F 2 > 2σ(F 2)] = 0.033 wR(F 2) = 0.085 S = 1.00 2254 reflections 239 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.23 e Å−3 Δρmin = −0.20 e Å−3 Data collection: CrystalClear (Rigaku/MSC, 2008 ▶); cell refinement: CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810038067/bq2236sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810038067/bq2236Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C21H16N4OF(000) = 712
Mr = 340.38Dx = 1.320 Mg m3
Orthorhombic, P212121Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ac 2abCell parameters from 2254 reflections
a = 7.1100 (19) Åθ = 3.4–27.5°
b = 12.115 (3) ŵ = 0.09 mm1
c = 19.884 (6) ÅT = 93 K
V = 1712.7 (8) Å3Column, yellow
Z = 40.43 × 0.27 × 0.27 mm
Rigaku AFC10/Saturn724+ diffractometer2128 reflections with I > 2σ(I)
Radiation source: Rotating AnodeRint = 0.032
graphiteθmax = 27.5°, θmin = 3.0°
Detector resolution: 28.5714 pixels mm-1h = −9→9
φ and ω scansk = −15→14
13708 measured reflectionsl = −24→25
2254 independent reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.033Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.085H atoms treated by a mixture of independent and constrained refinement
S = 1.00w = 1/[σ2(Fo2) + (0.0577P)2 + 0.196P] where P = (Fo2 + 2Fc2)/3
2254 reflections(Δ/σ)max = 0.001
239 parametersΔρmax = 0.23 e Å3
0 restraintsΔρmin = −0.19 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.41566 (18)0.55133 (9)0.57735 (6)0.0169 (3)
N10.1772 (2)0.56642 (12)0.50300 (7)0.0160 (3)
N20.1136 (2)0.55047 (12)0.43512 (7)0.0166 (3)
N40.0860 (2)0.74205 (12)0.44154 (7)0.0166 (3)
N50.0366 (2)0.74009 (12)0.50949 (7)0.0171 (3)
C30.0818 (2)0.64438 (14)0.40646 (8)0.0155 (3)
C60.0824 (2)0.65060 (13)0.53963 (8)0.0153 (3)
C70.0230 (2)0.62957 (14)0.60945 (8)0.0166 (4)
C80.0051 (3)0.52210 (15)0.63299 (9)0.0203 (4)
H80.03570.46200.60430.024*
C9−0.0570 (3)0.50186 (15)0.69807 (9)0.0237 (4)
H9−0.06890.42810.71370.028*
C10−0.1015 (3)0.58866 (16)0.74016 (9)0.0234 (4)
H10−0.14380.57470.78470.028*
C11−0.0842 (3)0.69637 (16)0.71726 (9)0.0230 (4)
H11−0.11440.75610.74630.028*
C12−0.0230 (3)0.71750 (15)0.65229 (9)0.0197 (4)
H12−0.01240.79140.63680.024*
C130.0390 (2)0.64618 (14)0.33354 (8)0.0163 (3)
C140.1052 (3)0.55940 (15)0.29386 (9)0.0203 (4)
H140.17290.50040.31400.024*
C150.0725 (3)0.55907 (16)0.22504 (9)0.0225 (4)
H150.11690.49960.19820.027*
C16−0.0250 (3)0.64547 (16)0.19537 (9)0.0217 (4)
H16−0.04680.64530.14820.026*
C17−0.0907 (3)0.73210 (16)0.23452 (9)0.0234 (4)
H17−0.15700.79140.21410.028*
C18−0.0594 (3)0.73225 (15)0.30386 (9)0.0200 (4)
H18−0.10540.79130.33070.024*
C190.3449 (2)0.52356 (13)0.52322 (8)0.0141 (3)
C200.4384 (2)0.44072 (14)0.47866 (8)0.0153 (3)
C210.6317 (3)0.45175 (15)0.46805 (9)0.0197 (4)
H210.69760.51230.48720.024*
C220.7276 (3)0.37442 (15)0.42963 (10)0.0242 (4)
H220.85830.38330.42110.029*
C230.6319 (3)0.28419 (16)0.40369 (9)0.0221 (4)
H230.69780.23020.37820.027*
C240.4404 (3)0.27244 (15)0.41477 (8)0.0207 (4)
H240.37570.21040.39690.025*
C250.3424 (3)0.35102 (14)0.45181 (9)0.0187 (4)
H250.21080.34350.45870.022*
H4N0.048 (3)0.8053 (17)0.4209 (10)0.020 (5)*
U11U22U33U12U13U23
O10.0209 (6)0.0155 (6)0.0144 (5)−0.0013 (5)−0.0018 (5)0.0010 (4)
N10.0183 (7)0.0151 (7)0.0145 (6)0.0020 (6)−0.0008 (6)−0.0025 (6)
N20.0181 (7)0.0185 (7)0.0132 (6)0.0027 (6)−0.0010 (6)−0.0031 (6)
N40.0226 (7)0.0142 (7)0.0129 (6)0.0022 (6)0.0006 (6)−0.0005 (5)
N50.0198 (7)0.0172 (7)0.0145 (7)0.0004 (6)0.0018 (6)−0.0028 (5)
C30.0140 (8)0.0153 (8)0.0171 (7)0.0000 (7)0.0003 (6)−0.0029 (6)
C60.0164 (8)0.0126 (8)0.0170 (8)0.0012 (7)−0.0021 (6)−0.0039 (6)
C70.0140 (8)0.0185 (9)0.0172 (8)−0.0001 (7)−0.0017 (6)−0.0020 (7)
C80.0201 (9)0.0174 (8)0.0233 (8)−0.0022 (7)0.0023 (7)−0.0025 (7)
C90.0226 (9)0.0227 (10)0.0256 (9)−0.0035 (8)0.0032 (8)0.0035 (7)
C100.0214 (9)0.0323 (10)0.0165 (8)−0.0013 (8)0.0031 (7)0.0020 (7)
C110.0239 (9)0.0273 (10)0.0179 (8)0.0037 (8)0.0005 (7)−0.0052 (7)
C120.0231 (9)0.0179 (8)0.0181 (8)0.0039 (8)−0.0008 (7)−0.0019 (7)
C130.0141 (8)0.0184 (8)0.0162 (7)−0.0025 (7)0.0005 (6)−0.0009 (6)
C140.0222 (9)0.0180 (9)0.0206 (8)0.0016 (7)−0.0017 (7)−0.0019 (7)
C150.0240 (9)0.0241 (9)0.0195 (8)−0.0004 (9)0.0015 (7)−0.0060 (7)
C160.0200 (8)0.0303 (10)0.0148 (7)−0.0042 (8)−0.0006 (7)−0.0006 (7)
C170.0235 (9)0.0256 (10)0.0210 (8)0.0022 (8)−0.0044 (7)0.0016 (7)
C180.0197 (9)0.0213 (9)0.0191 (8)0.0023 (8)−0.0005 (7)−0.0023 (7)
C190.0173 (8)0.0108 (7)0.0143 (7)−0.0013 (7)0.0017 (6)0.0027 (6)
C200.0197 (8)0.0141 (8)0.0121 (7)0.0015 (7)−0.0004 (6)0.0017 (6)
C210.0189 (9)0.0183 (9)0.0219 (8)−0.0006 (7)−0.0013 (7)0.0003 (7)
C220.0180 (9)0.0276 (10)0.0269 (9)0.0035 (8)0.0017 (7)−0.0001 (8)
C230.0254 (10)0.0218 (9)0.0192 (8)0.0093 (8)0.0009 (7)−0.0007 (7)
C240.0262 (9)0.0162 (8)0.0197 (8)0.0018 (8)−0.0054 (7)−0.0025 (7)
C250.0191 (8)0.0162 (8)0.0208 (8)0.0008 (8)−0.0011 (7)−0.0008 (7)
O1—C191.235 (2)C13—C141.396 (2)
N1—C191.361 (2)C14—C151.388 (2)
N1—C61.423 (2)C14—H140.9500
N1—N21.4363 (19)C15—C161.387 (3)
N2—C31.292 (2)C15—H150.9500
N4—C31.374 (2)C16—C171.388 (3)
N4—N51.3961 (19)C16—H160.9500
N4—H4N0.91 (2)C17—C181.397 (2)
N5—C61.281 (2)C17—H170.9500
C3—C131.482 (2)C18—H180.9500
C6—C71.473 (2)C19—C201.495 (2)
C7—C81.389 (3)C20—C251.390 (2)
C7—C121.403 (2)C20—C211.396 (2)
C8—C91.389 (3)C21—C221.388 (3)
C8—H80.9500C21—H210.9500
C9—C101.381 (3)C22—C231.387 (3)
C9—H90.9500C22—H220.9500
C10—C111.388 (3)C23—C241.387 (3)
C10—H100.9500C23—H230.9500
C11—C121.387 (2)C24—C251.391 (3)
C11—H110.9500C24—H240.9500
C12—H120.9500C25—H250.9500
C13—C181.387 (2)
C19—N1—C6122.48 (14)C15—C14—H14119.9
C19—N1—N2120.12 (13)C13—C14—H14119.9
C6—N1—N2115.36 (14)C16—C15—C14120.06 (17)
C3—N2—N1110.55 (13)C16—C15—H15120.0
C3—N4—N5118.11 (14)C14—C15—H15120.0
C3—N4—H4N119.3 (13)C15—C16—C17120.02 (16)
N5—N4—H4N112.0 (13)C15—C16—H16120.0
C6—N5—N4113.79 (14)C17—C16—H16120.0
N2—C3—N4122.04 (14)C16—C17—C18120.08 (18)
N2—C3—C13118.71 (15)C16—C17—H17120.0
N4—C3—C13119.25 (15)C18—C17—H17120.0
N5—C6—N1119.17 (15)C13—C18—C17119.95 (17)
N5—C6—C7120.97 (15)C13—C18—H18120.0
N1—C6—C7119.61 (15)C17—C18—H18120.0
C8—C7—C12119.05 (16)O1—C19—N1120.69 (15)
C8—C7—C6120.39 (15)O1—C19—C20121.22 (15)
C12—C7—C6120.52 (15)N1—C19—C20118.08 (14)
C9—C8—C7120.56 (17)C25—C20—C21120.00 (17)
C9—C8—H8119.7C25—C20—C19122.27 (16)
C7—C8—H8119.7C21—C20—C19117.59 (16)
C10—C9—C8120.20 (17)C22—C21—C20120.15 (18)
C10—C9—H9119.9C22—C21—H21119.9
C8—C9—H9119.9C20—C21—H21119.9
C9—C10—C11119.80 (16)C23—C22—C21119.68 (18)
C9—C10—H10120.1C23—C22—H22120.2
C11—C10—H10120.1C21—C22—H22120.2
C12—C11—C10120.47 (17)C24—C23—C22120.24 (18)
C12—C11—H11119.8C24—C23—H23119.9
C10—C11—H11119.8C22—C23—H23119.9
C11—C12—C7119.92 (17)C23—C24—C25120.37 (18)
C11—C12—H12120.0C23—C24—H24119.8
C7—C12—H12120.0C25—C24—H24119.8
C18—C13—C14119.71 (15)C20—C25—C24119.52 (17)
C18—C13—C3122.06 (15)C20—C25—H25120.2
C14—C13—C3118.20 (16)C24—C25—H25120.2
C15—C14—C13120.18 (17)
C19—N1—N2—C3−123.18 (17)N2—C3—C13—C14−25.1 (2)
C6—N1—N2—C341.0 (2)N4—C3—C13—C14155.04 (17)
C3—N4—N5—C633.1 (2)C18—C13—C14—C15−0.1 (3)
N1—N2—C3—N4−8.0 (2)C3—C13—C14—C15−178.39 (17)
N1—N2—C3—C13172.13 (14)C13—C14—C15—C160.5 (3)
N5—N4—C3—N2−30.0 (2)C14—C15—C16—C17−0.3 (3)
N5—N4—C3—C13149.85 (15)C15—C16—C17—C18−0.2 (3)
N4—N5—C6—N10.9 (2)C14—C13—C18—C17−0.4 (3)
N4—N5—C6—C7−173.36 (15)C3—C13—C18—C17177.78 (17)
C19—N1—C6—N5124.94 (18)C16—C17—C18—C130.6 (3)
N2—N1—C6—N5−38.8 (2)C6—N1—C19—O15.0 (2)
C19—N1—C6—C7−60.7 (2)N2—N1—C19—O1168.06 (15)
N2—N1—C6—C7135.50 (16)C6—N1—C19—C20−176.05 (15)
N5—C6—C7—C8154.45 (17)N2—N1—C19—C20−13.0 (2)
N1—C6—C7—C8−19.8 (2)O1—C19—C20—C25130.67 (18)
N5—C6—C7—C12−23.1 (3)N1—C19—C20—C25−48.2 (2)
N1—C6—C7—C12162.63 (17)O1—C19—C20—C21−45.1 (2)
C12—C7—C8—C9−0.1 (3)N1—C19—C20—C21136.01 (17)
C6—C7—C8—C9−177.77 (17)C25—C20—C21—C221.2 (3)
C7—C8—C9—C10−0.1 (3)C19—C20—C21—C22177.08 (16)
C8—C9—C10—C110.1 (3)C20—C21—C22—C23−2.1 (3)
C9—C10—C11—C120.2 (3)C21—C22—C23—C241.4 (3)
C10—C11—C12—C7−0.5 (3)C22—C23—C24—C250.1 (3)
C8—C7—C12—C110.4 (3)C21—C20—C25—C240.3 (3)
C6—C7—C12—C11178.06 (17)C19—C20—C25—C24−175.30 (15)
N2—C3—C13—C18156.66 (17)C23—C24—C25—C20−1.0 (3)
N4—C3—C13—C18−23.2 (2)
D—H···AD—HH···AD···AD—H···A
N4—H4N···O1i0.91 (2)1.97 (2)2.806 (2)150.9 (18)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N4—H4N⋯O1i0.91 (2)1.97 (2)2.806 (2)150.9 (18)

Symmetry code: (i) .

  3 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Synthesis, structure analysis, and antitumor activity of 3,6-disubstituted-1,4-dihydro-1,2,4,5-tetrazine derivatives.

Authors:  Guo-Wu Rao; Wei-Xiao Hu
Journal:  Bioorg Med Chem Lett       Date:  2006-05-18       Impact factor: 2.823

3.  Synthesis and antitumor activity of s-tetrazine derivatives.

Authors:  Wei-Xiao Hu; Guo-Wu Rao; Ya-Quan Sun
Journal:  Bioorg Med Chem Lett       Date:  2004-03-08       Impact factor: 2.823

  3 in total

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