Literature DB >> 21587625

2-Methyl-4,4-dioxo-N-phenyl-5,6-di-hydro-1,4-oxathiine-3-carboxamide (Oxycarboxin).

J Emery Brown1, Russell G Baughman.   

Abstract

In the title compound, C(12)H(13)NO(4)S, a systemic fungicide, the heterocycle adopts a lounge chair conformation and the dihedral angle between the ring planes is 25.8 (2)°. Inter-molecular C-H⋯O hydrogen bonds are noted in the crystal structure. Also observed is a short inter-action of a methyl-ene hydrogen atom with the π-electron system of a phenyl ring in an adjacent mol-ecule.

Entities:  

Year:  2010        PMID: 21587625      PMCID: PMC2983306          DOI: 10.1107/S1600536810037669

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

The title structure was determined as part of a larger project involving the structures of fungicides, see: Baughman & Paulos (2005 ▶). For the mode of biological action of the title compound, see: Ulrich & Mathre (1972 ▶).

Experimental

Crystal data

C12H13NO4S M = 267.29 Triclinic, a = 5.9985 (4) Å b = 8.3178 (6) Å c = 13.1333 (8) Å α = 104.702 (4)° β = 93.180 (5)° γ = 106.876 (5)° V = 600.59 (7) Å3 Z = 2 Mo Kα radiation μ = 0.28 mm−1 T = 295 K 0.54 × 0.44 × 0.16 mm

Data collection

Bruker P4 diffractometer Absorption correction: integration (XSHELL; Bruker, 1999 ▶) T min = 0.888, T max = 0.959 2152 measured reflections 2152 independent reflections 1884 reflections with I > 2σ(I) 3 standard reflections every 100 reflections intensity decay: 1.2%

Refinement

R[F 2 > 2σ(F 2)] = 0.049 wR(F 2) = 0.148 S = 1.17 2152 reflections 165 parameters H-atom parameters constrained Δρmax = 0.26 e Å−3 Δρmin = −0.30 e Å−3 Data collection: XSCANS (Bruker, 1996 ▶); cell refinement: XSCANS; data reduction: XSCANS; program(s) used to solve structure: SHELXS86 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL/PC (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL/PC, SHELXL97 and PLATON (Spek, 2009 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536810037669/fb2200sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810037669/fb2200Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C12H13NO4SZ = 2
Mr = 267.29F(000) = 280
Triclinic, P1Dx = 1.478 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 5.9985 (4) ÅCell parameters from 100 reflections
b = 8.3178 (6) Åθ = 10.7–18.8°
c = 13.1333 (8) ŵ = 0.28 mm1
α = 104.702 (4)°T = 295 K
β = 93.180 (5)°Parrallelepiped, colorless
γ = 106.876 (5)°0.54 × 0.44 × 0.16 mm
V = 600.59 (7) Å3
Bruker P4 diffractometer1884 reflections with I > 2σ(I)
Radiation source: normal-focus sealed tubeRint = 0.0000
graphiteθmax = 25.3°, θmin = 2.7°
θ/2θ scansh = −7→7
Absorption correction: integration (XSHELL; Bruker, 1999)k = −9→9
Tmin = 0.888, Tmax = 0.959l = −7→15
2152 measured reflections3 standard reflections every 100 reflections
2152 independent reflections intensity decay: 1.2%
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.049Hydrogen site location: difference Fourier map
wR(F2) = 0.148H-atom parameters constrained
S = 1.17w = 1/[σ2(Fo2) + (0.0317P)2 + 1.2476P] where P = (Fo2 + 2Fc2)/3
2152 reflections(Δ/σ)max < 0.001
165 parametersΔρmax = 0.26 e Å3
0 restraintsΔρmin = −0.30 e Å3
51 constraints
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor, wR, and goodness of fit, S, are based on F2, conventional R-factors, R, are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger.
xyzUiso*/Ueq
S10.86650 (16)0.76152 (12)0.09237 (7)0.0340 (3)
O11.3241 (5)0.9576 (4)0.2477 (2)0.0476 (7)
O20.7405 (5)0.8747 (4)0.0705 (3)0.0533 (8)
O30.7619 (5)0.5767 (4)0.0397 (2)0.0455 (7)
O40.7181 (5)0.7679 (4)0.3786 (2)0.0483 (7)
N10.5358 (5)0.5725 (4)0.2219 (2)0.0377 (7)
H1A0.53930.54140.15460.045*
C11.2901 (7)0.9966 (5)0.1490 (4)0.0467 (10)
H1B1.44181.04880.12910.056*
H1C1.20461.08080.15760.056*
C21.1548 (7)0.8332 (5)0.0621 (3)0.0379 (9)
H2A1.22910.74310.05840.045*
H2B1.15170.8584−0.00600.045*
C30.9171 (6)0.7890 (5)0.2294 (3)0.0318 (8)
C41.1355 (7)0.8708 (5)0.2853 (3)0.0386 (9)
C51.2078 (8)0.8729 (7)0.3958 (3)0.0520 (11)
H5A1.37050.87960.40450.078*
H5B1.11340.76770.40950.078*
H5C1.18610.97270.44490.078*
C60.7168 (6)0.7096 (5)0.2834 (3)0.0344 (8)
C70.3405 (7)0.4774 (5)0.2627 (3)0.0339 (8)
C80.3722 (8)0.4250 (6)0.3528 (3)0.0459 (10)
H80.52240.45410.38910.055*
C90.1786 (9)0.3287 (6)0.3887 (4)0.0555 (12)
H90.19900.29530.45020.067*
C10−0.0441 (9)0.2821 (6)0.3339 (4)0.0574 (12)
H10−0.17350.21670.35770.069*
C11−0.0730 (8)0.3329 (6)0.2440 (4)0.0508 (11)
H11−0.22290.30120.20680.061*
C120.1177 (7)0.4309 (5)0.2077 (3)0.0375 (8)
H120.09600.46520.14670.045*
U11U22U33U12U13U23
S10.0286 (5)0.0390 (5)0.0340 (5)0.0066 (4)0.0065 (4)0.0136 (4)
O10.0300 (14)0.0505 (17)0.0492 (17)0.0020 (12)0.0030 (12)0.0044 (14)
O20.0463 (17)0.071 (2)0.0596 (19)0.0272 (16)0.0125 (14)0.0363 (17)
O30.0411 (15)0.0447 (16)0.0344 (14)−0.0056 (12)0.0054 (12)0.0049 (12)
O40.0473 (17)0.0546 (18)0.0334 (15)0.0067 (14)0.0095 (12)0.0059 (13)
N10.0374 (17)0.0426 (18)0.0281 (15)0.0051 (14)0.0082 (13)0.0091 (13)
C10.038 (2)0.036 (2)0.059 (3)0.0018 (17)0.0134 (19)0.0106 (19)
C20.034 (2)0.035 (2)0.043 (2)0.0063 (16)0.0153 (16)0.0115 (16)
C30.0314 (18)0.0325 (18)0.0314 (18)0.0101 (15)0.0059 (15)0.0086 (15)
C40.036 (2)0.036 (2)0.041 (2)0.0123 (16)0.0089 (16)0.0028 (16)
C50.043 (2)0.068 (3)0.038 (2)0.019 (2)−0.0017 (18)0.002 (2)
C60.0335 (19)0.0348 (19)0.035 (2)0.0106 (16)0.0060 (15)0.0103 (16)
C70.038 (2)0.0308 (18)0.0303 (18)0.0076 (15)0.0073 (15)0.0068 (15)
C80.045 (2)0.052 (2)0.037 (2)0.0065 (19)0.0042 (18)0.0171 (18)
C90.070 (3)0.052 (3)0.040 (2)0.005 (2)0.016 (2)0.021 (2)
C100.058 (3)0.050 (3)0.057 (3)0.002 (2)0.027 (2)0.017 (2)
C110.039 (2)0.044 (2)0.059 (3)0.0048 (19)0.008 (2)0.007 (2)
C120.040 (2)0.0339 (19)0.0351 (19)0.0086 (16)0.0053 (16)0.0072 (16)
S1—O21.438 (3)C3—C61.501 (5)
S1—O31.445 (3)C4—C51.486 (6)
S1—C31.754 (4)C5—H5A0.9600
S1—C21.761 (4)C5—H5B0.9600
O1—C41.346 (5)C5—H5C0.9600
O1—C11.432 (5)C7—C121.382 (5)
O4—C61.220 (4)C7—C81.383 (5)
N1—C61.359 (5)C8—C91.388 (6)
N1—C71.425 (5)C8—H80.9300
N1—H1A0.8600C9—C101.380 (7)
C1—C21.509 (5)C9—H90.9300
C1—H1B0.9700C10—C111.369 (7)
C1—H1C0.9700C10—H100.9300
C2—H2A0.9700C11—C121.385 (6)
C2—H2B0.9700C11—H110.9300
C3—C41.357 (5)C12—H120.9300
O2—S1—O3116.48 (19)C4—C5—H5A109.5
O2—S1—C3110.85 (18)C4—C5—H5B109.5
O3—S1—C3108.26 (17)H5A—C5—H5B109.5
O2—S1—C2108.98 (18)C4—C5—H5C109.5
O3—S1—C2109.37 (18)H5A—C5—H5C109.5
C3—S1—C2101.89 (18)H5B—C5—H5C109.5
C4—O1—C1118.9 (3)O4—C6—N1122.0 (3)
C6—N1—C7123.8 (3)O4—C6—C3120.6 (3)
C6—N1—H1A118.1N1—C6—C3117.4 (3)
C7—N1—H1A118.1C12—C7—C8120.1 (4)
O1—C1—C2111.0 (3)C12—C7—N1118.7 (3)
O1—C1—H1B109.4C8—C7—N1121.2 (4)
C2—C1—H1B109.4C7—C8—C9119.6 (4)
O1—C1—H1C109.4C7—C8—H8120.2
C2—C1—H1C109.4C9—C8—H8120.2
H1B—C1—H1C108.0C10—C9—C8120.4 (4)
C1—C2—S1107.8 (3)C10—C9—H9119.8
C1—C2—H2A110.2C8—C9—H9119.8
S1—C2—H2A110.2C11—C10—C9119.4 (4)
C1—C2—H2B110.2C11—C10—H10120.3
S1—C2—H2B110.2C9—C10—H10120.3
H2A—C2—H2B108.5C10—C11—C12121.0 (4)
C4—C3—C6120.0 (3)C10—C11—H11119.5
C4—C3—S1121.1 (3)C12—C11—H11119.5
C6—C3—S1118.8 (3)C7—C12—C11119.5 (4)
O1—C4—C3125.3 (4)C7—C12—H12120.3
O1—C4—C5109.0 (3)C11—C12—H12120.3
C3—C4—C5125.7 (4)
C4—O1—C1—C2−53.6 (5)C7—N1—C6—O4−4.3 (6)
O1—C1—C2—S167.6 (4)C7—N1—C6—C3176.2 (3)
O2—S1—C2—C174.7 (3)C4—C3—C6—O427.4 (5)
O3—S1—C2—C1−157.0 (3)S1—C3—C6—O4−156.6 (3)
C3—S1—C2—C1−42.6 (3)C4—C3—C6—N1−153.1 (4)
O2—S1—C3—C4−108.1 (3)S1—C3—C6—N122.9 (5)
O3—S1—C3—C4123.0 (3)C6—N1—C7—C12138.0 (4)
C2—S1—C3—C47.8 (4)C6—N1—C7—C8−44.9 (6)
O2—S1—C3—C676.0 (3)C12—C7—C8—C9−1.3 (6)
O3—S1—C3—C6−52.9 (3)N1—C7—C8—C9−178.4 (4)
C2—S1—C3—C6−168.2 (3)C7—C8—C9—C101.3 (7)
C1—O1—C4—C312.1 (6)C8—C9—C10—C11−0.6 (7)
C1—O1—C4—C5−170.3 (3)C9—C10—C11—C12−0.3 (7)
C6—C3—C4—O1−174.9 (3)C8—C7—C12—C110.5 (6)
S1—C3—C4—O19.2 (5)N1—C7—C12—C11177.6 (4)
C6—C3—C4—C57.9 (6)C10—C11—C12—C70.3 (6)
S1—C3—C4—C5−168.0 (3)
Cg is the centroid of the C7–C12 ring.
D—H···AD—HH···AD···AD—H···A
N1—H1A···O30.862.092.819 (4)142
C2—H2B···O2i0.972.503.274 (5)137
C5—H5A···O4ii0.962.523.422 (6)157
C5—H5B···O40.962.372.786 (6)106
C8—H8···O40.932.582.926 (5)103
C9—H9···O4iii0.932.493.419 (5)175
C1—H1C···Cgiv0.972.823.645144
Table 1

Hydrogen-bond geometry (Å, °)

Cg is the centroid of the C7–C12 ring.

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1A⋯O30.862.092.819 (4)142
C2—H2B⋯O2i0.972.503.274 (5)137
C5—H5A⋯O4ii0.962.523.422 (6)157
C9—H9⋯O4iii0.932.493.419 (5)175
C1—H1CCgiv0.972.823.645144

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

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