| Literature DB >> 21587613 |
Jie Mou, Chen-Xia Yu, Chang-Sheng Yao.
Abstract
In the title compound, C(15)H(12)ClF(3)N(4)O(2), the dihydro-pyrimidine ring exhibits an envelope conformation. The dihedral angle between the mean planes of the dihydro-pyrimidine and phenyl rings is 83.94 (6)°. The OCH(2)CH(3) group is disordered over two sites with occupancies of 0.155 (3) and 0.845 (3). The crystal packing is stabilized by inter-molecular N-H⋯N hydrogen bonds.Entities:
Year: 2010 PMID: 21587613 PMCID: PMC2983298 DOI: 10.1107/S1600536810037712
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C15H12ClF3N4O2 | |
| Monoclinic, | Mo |
| Hall symbol: -P 2yn | Cell parameters from 3832 reflections |
| θ = 2.4–27.9° | |
| µ = 0.28 mm−1 | |
| β = 99.237 (9)° | Block, colorless |
| 0.26 × 0.22 × 0.20 mm | |
| Rigaku Saturn diffractometer | 3835 independent reflections |
| Radiation source: rotating anode | 3058 reflections with |
| confocal | |
| Detector resolution: 7.31 pixels mm-1 | θmax = 27.9°, θmin = 2.4° |
| ω scans | |
| Absorption correction: multi-scan | |
| 14364 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 3835 reflections | (Δ/σ)max = 0.001 |
| 242 parameters | Δρmax = 0.27 e Å−3 |
| 6 restraints | Δρmin = −0.40 e Å−3 |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
| Occ. (<1) | |||||
| Cl1 | −0.02142 (6) | 1.41310 (7) | 0.14247 (2) | 0.04311 (18) | |
| F1 | 0.35904 (10) | 0.54406 (16) | 0.01321 (5) | 0.0375 (3) | |
| F2 | 0.44949 (11) | 0.82808 (16) | 0.01419 (5) | 0.0334 (3) | |
| F3 | 0.47647 (11) | 0.65227 (16) | 0.08811 (5) | 0.0329 (3) | |
| O1 | 0.33660 (14) | 1.2697 (2) | 0.11875 (6) | 0.0369 (3) | |
| N1 | 0.14288 (14) | 0.6813 (2) | 0.03869 (6) | 0.0211 (3) | |
| N2 | 0.00227 (14) | 0.9257 (2) | 0.06666 (6) | 0.0213 (3) | |
| N3 | −0.13449 (15) | 0.9673 (2) | 0.06434 (6) | 0.0261 (3) | |
| N4 | −0.10446 (14) | 0.6764 (2) | 0.02200 (6) | 0.0228 (3) | |
| C1 | 0.01658 (17) | 0.7543 (2) | 0.04212 (7) | 0.0198 (3) | |
| C2 | 0.11062 (17) | 1.0474 (2) | 0.09691 (7) | 0.0205 (3) | |
| H2 | 0.1003 | 1.1842 | 0.0819 | 0.025* | |
| C3 | 0.24727 (17) | 0.9649 (2) | 0.08603 (7) | 0.0215 (4) | |
| C4 | 0.25580 (16) | 0.7931 (2) | 0.05905 (7) | 0.0199 (3) | |
| C5 | 0.09913 (17) | 1.0529 (2) | 0.15815 (7) | 0.0217 (4) | |
| C6 | 0.04123 (19) | 1.2105 (3) | 0.18215 (8) | 0.0274 (4) | |
| C7 | 0.0304 (2) | 1.2109 (3) | 0.23816 (8) | 0.0356 (5) | |
| H7 | −0.0083 | 1.3206 | 0.2541 | 0.043* | |
| C8 | 0.0765 (2) | 1.0501 (3) | 0.27056 (8) | 0.0381 (5) | |
| H8 | 0.0690 | 1.0490 | 0.3089 | 0.046* | |
| C9 | 0.1329 (2) | 0.8925 (3) | 0.24762 (8) | 0.0355 (5) | |
| H9 | 0.1644 | 0.7823 | 0.2700 | 0.043* | |
| C10 | 0.14409 (19) | 0.8941 (3) | 0.19169 (8) | 0.0284 (4) | |
| H10 | 0.1833 | 0.7842 | 0.1761 | 0.034* | |
| C11 | 0.36016 (18) | 1.1040 (3) | 0.10611 (7) | 0.0249 (4) | |
| O2 | 0.48511 (16) | 1.0381 (3) | 0.10610 (10) | 0.0390 (6) | 0.845 (3) |
| C12 | 0.5990 (2) | 1.1697 (4) | 0.12467 (11) | 0.0315 (6) | 0.845 (3) |
| H12A | 0.5678 | 1.3077 | 0.1199 | 0.038* | 0.845 (3) |
| H12B | 0.6721 | 1.1489 | 0.1019 | 0.038* | 0.845 (3) |
| C13 | 0.6540 (3) | 1.1316 (5) | 0.18435 (12) | 0.0518 (8) | 0.845 (3) |
| H13A | 0.5832 | 1.1607 | 0.2070 | 0.078* | 0.845 (3) |
| H13B | 0.7338 | 1.2157 | 0.1960 | 0.078* | 0.845 (3) |
| H13C | 0.6812 | 0.9934 | 0.1892 | 0.078* | 0.845 (3) |
| O2' | 0.4728 (9) | 0.9900 (15) | 0.1298 (5) | 0.0390 (6) | 0.155 (3) |
| C12' | 0.5996 (11) | 1.0954 (19) | 0.1454 (7) | 0.0315 (6) | 0.155 (3) |
| H12C | 0.5860 | 1.2056 | 0.1704 | 0.038* | 0.155 (3) |
| H12D | 0.6309 | 1.1499 | 0.1120 | 0.038* | 0.155 (3) |
| C13' | 0.7072 (14) | 0.952 (2) | 0.1752 (7) | 0.0518 (8) | 0.155 (3) |
| H13D | 0.6847 | 0.9190 | 0.2117 | 0.078* | 0.155 (3) |
| H13E | 0.7979 | 1.0133 | 0.1796 | 0.078* | 0.155 (3) |
| H13F | 0.7076 | 0.8317 | 0.1530 | 0.078* | 0.155 (3) |
| C14 | 0.38686 (17) | 0.7050 (2) | 0.04419 (7) | 0.0225 (4) | |
| C15 | −0.19178 (18) | 0.8142 (3) | 0.03716 (7) | 0.0255 (4) | |
| H15 | −0.2884 | 0.8001 | 0.0285 | 0.031* | |
| H1 | 0.146 (2) | 0.567 (3) | 0.0203 (9) | 0.039 (6)* |
| Cl1 | 0.0546 (4) | 0.0261 (3) | 0.0533 (4) | 0.0094 (2) | 0.0228 (3) | 0.0025 (2) |
| F1 | 0.0217 (6) | 0.0361 (6) | 0.0564 (8) | −0.0049 (5) | 0.0118 (5) | −0.0233 (5) |
| F2 | 0.0250 (6) | 0.0366 (6) | 0.0418 (7) | −0.0032 (4) | 0.0153 (5) | 0.0102 (5) |
| F3 | 0.0249 (6) | 0.0370 (6) | 0.0359 (6) | 0.0063 (5) | 0.0023 (5) | 0.0070 (5) |
| O1 | 0.0310 (8) | 0.0290 (7) | 0.0506 (9) | −0.0071 (6) | 0.0063 (6) | −0.0098 (6) |
| N1 | 0.0169 (7) | 0.0207 (7) | 0.0259 (8) | −0.0011 (5) | 0.0038 (6) | −0.0039 (6) |
| N2 | 0.0150 (7) | 0.0256 (7) | 0.0231 (7) | 0.0003 (5) | 0.0022 (6) | −0.0043 (6) |
| N3 | 0.0169 (7) | 0.0317 (8) | 0.0293 (8) | 0.0022 (6) | 0.0026 (6) | −0.0046 (6) |
| N4 | 0.0172 (7) | 0.0261 (8) | 0.0245 (8) | −0.0008 (6) | 0.0017 (6) | −0.0028 (6) |
| C1 | 0.0175 (8) | 0.0224 (8) | 0.0191 (8) | −0.0011 (6) | 0.0022 (6) | −0.0002 (6) |
| C2 | 0.0194 (8) | 0.0210 (8) | 0.0208 (8) | −0.0021 (6) | 0.0022 (6) | −0.0027 (6) |
| C3 | 0.0186 (8) | 0.0250 (8) | 0.0207 (8) | −0.0015 (7) | 0.0030 (7) | −0.0007 (6) |
| C4 | 0.0168 (8) | 0.0235 (8) | 0.0194 (8) | −0.0023 (6) | 0.0030 (6) | 0.0023 (6) |
| C5 | 0.0177 (8) | 0.0269 (9) | 0.0205 (8) | −0.0036 (7) | 0.0027 (7) | −0.0028 (7) |
| C6 | 0.0251 (9) | 0.0283 (9) | 0.0295 (10) | −0.0030 (7) | 0.0069 (7) | −0.0045 (7) |
| C7 | 0.0325 (11) | 0.0440 (12) | 0.0329 (11) | −0.0062 (9) | 0.0134 (8) | −0.0141 (9) |
| C8 | 0.0311 (11) | 0.0631 (14) | 0.0207 (9) | −0.0098 (10) | 0.0057 (8) | −0.0034 (9) |
| C9 | 0.0281 (10) | 0.0525 (12) | 0.0260 (10) | 0.0015 (9) | 0.0043 (8) | 0.0104 (9) |
| C10 | 0.0249 (9) | 0.0341 (10) | 0.0263 (9) | 0.0022 (8) | 0.0046 (7) | 0.0019 (8) |
| C11 | 0.0215 (9) | 0.0318 (10) | 0.0217 (9) | −0.0031 (7) | 0.0051 (7) | −0.0037 (7) |
| O2 | 0.0174 (8) | 0.0325 (10) | 0.0652 (16) | −0.0059 (7) | 0.0001 (8) | −0.0180 (10) |
| C12 | 0.0184 (10) | 0.0282 (14) | 0.0467 (16) | −0.0069 (9) | 0.0016 (10) | −0.0065 (11) |
| C13 | 0.0329 (15) | 0.070 (2) | 0.0506 (17) | −0.0184 (13) | 0.0010 (12) | −0.0013 (15) |
| O2' | 0.0174 (8) | 0.0325 (10) | 0.0652 (16) | −0.0059 (7) | 0.0001 (8) | −0.0180 (10) |
| C12' | 0.0184 (10) | 0.0282 (14) | 0.0467 (16) | −0.0069 (9) | 0.0016 (10) | −0.0065 (11) |
| C13' | 0.0329 (15) | 0.070 (2) | 0.0506 (17) | −0.0184 (13) | 0.0010 (12) | −0.0013 (15) |
| C14 | 0.0197 (8) | 0.0227 (8) | 0.0258 (9) | −0.0040 (6) | 0.0059 (7) | −0.0004 (7) |
| C15 | 0.0165 (8) | 0.0313 (9) | 0.0282 (9) | 0.0003 (7) | 0.0020 (7) | −0.0029 (7) |
| Cl1—C6 | 1.7407 (19) | C7—H7 | 0.9500 |
| F1—C14 | 1.3339 (19) | C8—C9 | 1.369 (3) |
| F2—C14 | 1.3293 (19) | C8—H8 | 0.9500 |
| F3—C14 | 1.326 (2) | C9—C10 | 1.387 (3) |
| O1—C11 | 1.202 (2) | C9—H9 | 0.9500 |
| N1—C1 | 1.359 (2) | C10—H10 | 0.9500 |
| N1—C4 | 1.377 (2) | C11—O2 | 1.315 (2) |
| N1—H1 | 0.90 (2) | C11—O2' | 1.404 (8) |
| N2—C1 | 1.329 (2) | O2—C12 | 1.453 (3) |
| N2—N3 | 1.3744 (19) | C12—C13 | 1.493 (4) |
| N2—C2 | 1.458 (2) | C12—H12A | 0.9900 |
| N3—C15 | 1.314 (2) | C12—H12B | 0.9900 |
| N4—C1 | 1.329 (2) | C13—H13A | 0.9800 |
| N4—C15 | 1.366 (2) | C13—H13B | 0.9800 |
| C2—C5 | 1.517 (2) | C13—H13C | 0.9800 |
| C2—C3 | 1.526 (2) | O2'—C12' | 1.442 (9) |
| C2—H2 | 1.0000 | C12'—C13' | 1.539 (9) |
| C3—C4 | 1.351 (2) | C12'—H12C | 0.9900 |
| C3—C11 | 1.486 (2) | C12'—H12D | 0.9900 |
| C4—C14 | 1.524 (2) | C13'—H13D | 0.9800 |
| C5—C10 | 1.385 (2) | C13'—H13E | 0.9800 |
| C5—C6 | 1.389 (2) | C13'—H13F | 0.9800 |
| C6—C7 | 1.388 (3) | C15—H15 | 0.9500 |
| C7—C8 | 1.384 (3) | ||
| C1—N1—C4 | 118.45 (14) | C5—C10—C9 | 121.27 (18) |
| C1—N1—H1 | 116.7 (14) | C5—C10—H10 | 119.4 |
| C4—N1—H1 | 124.6 (14) | C9—C10—H10 | 119.4 |
| C1—N2—N3 | 109.72 (13) | O1—C11—O2 | 122.77 (17) |
| C1—N2—C2 | 127.16 (14) | O1—C11—O2' | 125.9 (5) |
| N3—N2—C2 | 122.86 (13) | O2—C11—O2' | 29.2 (5) |
| C15—N3—N2 | 101.51 (14) | O1—C11—C3 | 121.07 (16) |
| C1—N4—C15 | 101.41 (14) | O2—C11—C3 | 116.05 (16) |
| N4—C1—N2 | 111.19 (15) | O2'—C11—C3 | 106.8 (4) |
| N4—C1—N1 | 127.88 (15) | C11—O2—C12 | 118.11 (18) |
| N2—C1—N1 | 120.91 (15) | O2—C12—C13 | 109.9 (2) |
| N2—C2—C5 | 110.32 (13) | O2—C12—H12A | 109.7 |
| N2—C2—C3 | 107.61 (13) | C13—C12—H12A | 109.7 |
| C5—C2—C3 | 112.88 (14) | O2—C12—H12B | 109.7 |
| N2—C2—H2 | 108.6 | C13—C12—H12B | 109.7 |
| C5—C2—H2 | 108.6 | H12A—C12—H12B | 108.2 |
| C3—C2—H2 | 108.6 | C11—O2'—C12' | 115.7 (8) |
| C4—C3—C11 | 127.56 (16) | O2'—C12'—C13' | 108.4 (10) |
| C4—C3—C2 | 121.99 (15) | O2'—C12'—H12C | 110.0 |
| C11—C3—C2 | 110.36 (14) | C13'—C12'—H12C | 110.0 |
| C3—C4—N1 | 122.93 (16) | O2'—C12'—H12D | 110.0 |
| C3—C4—C14 | 125.36 (15) | C13'—C12'—H12D | 110.0 |
| N1—C4—C14 | 111.62 (14) | H12C—C12'—H12D | 108.4 |
| C10—C5—C6 | 117.92 (16) | C12'—C13'—H13D | 109.5 |
| C10—C5—C2 | 119.70 (15) | C12'—C13'—H13E | 109.5 |
| C6—C5—C2 | 122.36 (15) | H13D—C13'—H13E | 109.5 |
| C7—C6—C5 | 121.26 (18) | C12'—C13'—H13F | 109.5 |
| C7—C6—Cl1 | 117.98 (15) | H13D—C13'—H13F | 109.5 |
| C5—C6—Cl1 | 120.75 (14) | H13E—C13'—H13F | 109.5 |
| C8—C7—C6 | 119.36 (18) | F3—C14—F2 | 107.78 (13) |
| C8—C7—H7 | 120.3 | F3—C14—F1 | 106.64 (14) |
| C6—C7—H7 | 120.3 | F2—C14—F1 | 106.11 (14) |
| C9—C8—C7 | 120.29 (18) | F3—C14—C4 | 113.45 (14) |
| C9—C8—H8 | 119.9 | F2—C14—C4 | 111.87 (14) |
| C7—C8—H8 | 119.9 | F1—C14—C4 | 110.60 (13) |
| C8—C9—C10 | 119.89 (19) | N3—C15—N4 | 116.16 (15) |
| C8—C9—H9 | 120.1 | N3—C15—H15 | 121.9 |
| C10—C9—H9 | 120.1 | N4—C15—H15 | 121.9 |
| C1—N2—N3—C15 | −0.87 (18) | C2—C5—C6—Cl1 | −0.2 (2) |
| C2—N2—N3—C15 | −175.36 (15) | C5—C6—C7—C8 | −0.9 (3) |
| C15—N4—C1—N2 | −0.70 (18) | Cl1—C6—C7—C8 | 178.59 (15) |
| C15—N4—C1—N1 | −179.05 (17) | C6—C7—C8—C9 | 0.3 (3) |
| N3—N2—C1—N4 | 1.04 (19) | C7—C8—C9—C10 | 0.1 (3) |
| C2—N2—C1—N4 | 175.24 (15) | C6—C5—C10—C9 | −0.5 (3) |
| N3—N2—C1—N1 | 179.53 (15) | C2—C5—C10—C9 | −178.84 (16) |
| C2—N2—C1—N1 | −6.3 (3) | C8—C9—C10—C5 | 0.0 (3) |
| C4—N1—C1—N4 | 175.37 (16) | C4—C3—C11—O1 | 163.90 (19) |
| C4—N1—C1—N2 | −2.8 (2) | C2—C3—C11—O1 | −12.7 (2) |
| C1—N2—C2—C5 | −112.47 (18) | C4—C3—C11—O2 | −12.5 (3) |
| N3—N2—C2—C5 | 61.02 (19) | C2—C3—C11—O2 | 170.95 (18) |
| C1—N2—C2—C3 | 11.1 (2) | C4—C3—C11—O2' | −42.3 (6) |
| N3—N2—C2—C3 | −175.44 (14) | C2—C3—C11—O2' | 141.1 (6) |
| N2—C2—C3—C4 | −8.1 (2) | O1—C11—O2—C12 | 2.9 (3) |
| C5—C2—C3—C4 | 113.82 (18) | O2'—C11—O2—C12 | −103.3 (10) |
| N2—C2—C3—C11 | 168.67 (13) | C3—C11—O2—C12 | 179.19 (18) |
| C5—C2—C3—C11 | −69.36 (18) | C11—O2—C12—C13 | 96.5 (3) |
| C11—C3—C4—N1 | −175.26 (16) | O1—C11—O2'—C12' | −35.7 (14) |
| C2—C3—C4—N1 | 1.0 (3) | O2—C11—O2'—C12' | 58.5 (11) |
| C11—C3—C4—C14 | 0.8 (3) | C3—C11—O2'—C12' | 172.2 (10) |
| C2—C3—C4—C14 | 177.07 (15) | C11—O2'—C12'—C13' | 174.9 (12) |
| C1—N1—C4—C3 | 5.2 (2) | C3—C4—C14—F3 | 66.0 (2) |
| C1—N1—C4—C14 | −171.36 (14) | N1—C4—C14—F3 | −117.51 (15) |
| N2—C2—C5—C10 | 77.54 (19) | C3—C4—C14—F2 | −56.2 (2) |
| C3—C2—C5—C10 | −42.9 (2) | N1—C4—C14—F2 | 120.30 (15) |
| N2—C2—C5—C6 | −100.70 (18) | C3—C4—C14—F1 | −174.22 (16) |
| C3—C2—C5—C6 | 138.88 (17) | N1—C4—C14—F1 | 2.25 (19) |
| C10—C5—C6—C7 | 0.9 (3) | N2—N3—C15—N4 | 0.5 (2) |
| C2—C5—C6—C7 | 179.21 (16) | C1—N4—C15—N3 | 0.1 (2) |
| C10—C5—C6—Cl1 | −178.49 (13) |
| H··· | ||||
| N1—H1···N4i | 0.90 (2) | 1.96 (2) | 2.843 (2) | 166.3 (19) |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| N1—H1⋯N4i | 0.90 (2) | 1.96 (2) | 2.843 (2) | 166.3 (19) |
Symmetry code: (i) .