Literature DB >> 21587613

Ethyl 7-(2-chloro-phen-yl)-5-trifluoro-meth-yl-4,7-dihydro-1,2,4-triazolo[1,5-a]pyrimidine-6-carboxyl-ate.

Jie Mou, Chen-Xia Yu, Chang-Sheng Yao.   

Abstract

In the title compound, C(15)H(12)ClF(3)N(4)O(2), the dihydro-pyrimidine ring exhibits an envelope conformation. The dihedral angle between the mean planes of the dihydro-pyrimidine and phenyl rings is 83.94 (6)°. The OCH(2)CH(3) group is disordered over two sites with occupancies of 0.155 (3) and 0.845 (3). The crystal packing is stabilized by inter-molecular N-H⋯N hydrogen bonds.

Entities:  

Year:  2010        PMID: 21587613      PMCID: PMC2983298          DOI: 10.1107/S1600536810037712

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the anti­cancer activity, inhibition of the MDM2-p53 protein–protein inter­action and the anti­tuberculosis and dehydrogenase inhibitory activity of [1,2,4]triazolo [1,5-a]pyrimidine derivatives, see: Zhang et al. (2007 ▶); Allen et al. (2009 ▶); Pereyaslavskaya et al. (2008 ▶); Gujjar et al. (2009 ▶). For the bioactivity of trifluoro­methyl­ated mol­ecules, see: Kirk, (2006 ▶). For the preparation of trifluoro­methyl­ated [1,2,4]triazolo[1,5-a]pyrimidine derivatives, see Pryadeina et al. (2004 ▶). For puckering parameters, see: Cremer & Pople (1975 ▶).

Experimental

Crystal data

C15H12ClF3N4O2 M = 372.74 Monoclinic, a = 9.8927 (12) Å b = 6.8055 (6) Å c = 24.403 (3) Å β = 99.237 (9)° V = 1621.6 (3) Å3 Z = 4 Mo Kα radiation μ = 0.29 mm−1 T = 113 K 0.26 × 0.22 × 0.20 mm

Data collection

Rigaku Saturn diffractometer Absorption correction: multi-scan (CrystalClear;Rigaku/MSC, 2002 ▶) T min = 0.930, T max = 0.945 14364 measured reflections 3835 independent reflections 3058 reflections with I > 2σ(I) R int = 0.043

Refinement

R[F 2 > 2σ(F 2)] = 0.047 wR(F 2) = 0.121 S = 1.08 3835 reflections 242 parameters 6 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.27 e Å−3 Δρmin = −0.40 e Å−3 Data collection: CrystalClear (Rigaku/MSC, 2002 ▶); cell refinement: CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536810037712/hg2715sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810037712/hg2715Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C15H12ClF3N4O2F(000) = 760
Mr = 372.74Dx = 1.527 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71070 Å
Hall symbol: -P 2ynCell parameters from 3832 reflections
a = 9.8927 (12) Åθ = 2.4–27.9°
b = 6.8055 (6) ŵ = 0.28 mm1
c = 24.403 (3) ÅT = 113 K
β = 99.237 (9)°Block, colorless
V = 1621.6 (3) Å30.26 × 0.22 × 0.20 mm
Z = 4
Rigaku Saturn diffractometer3835 independent reflections
Radiation source: rotating anode3058 reflections with I > 2σ(I)
confocalRint = 0.043
Detector resolution: 7.31 pixels mm-1θmax = 27.9°, θmin = 2.4°
ω scansh = −13→13
Absorption correction: multi-scan CrystalCleark = −8→8
Tmin = 0.930, Tmax = 0.945l = −32→32
14364 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.047Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.121H atoms treated by a mixture of independent and constrained refinement
S = 1.08w = 1/[σ2(Fo2) + (0.0596P)2 + 0.2191P] where P = (Fo2 + 2Fc2)/3
3835 reflections(Δ/σ)max = 0.001
242 parametersΔρmax = 0.27 e Å3
6 restraintsΔρmin = −0.40 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
Cl1−0.02142 (6)1.41310 (7)0.14247 (2)0.04311 (18)
F10.35904 (10)0.54406 (16)0.01321 (5)0.0375 (3)
F20.44949 (11)0.82808 (16)0.01419 (5)0.0334 (3)
F30.47647 (11)0.65227 (16)0.08811 (5)0.0329 (3)
O10.33660 (14)1.2697 (2)0.11875 (6)0.0369 (3)
N10.14288 (14)0.6813 (2)0.03869 (6)0.0211 (3)
N20.00227 (14)0.9257 (2)0.06666 (6)0.0213 (3)
N3−0.13449 (15)0.9673 (2)0.06434 (6)0.0261 (3)
N4−0.10446 (14)0.6764 (2)0.02200 (6)0.0228 (3)
C10.01658 (17)0.7543 (2)0.04212 (7)0.0198 (3)
C20.11062 (17)1.0474 (2)0.09691 (7)0.0205 (3)
H20.10031.18420.08190.025*
C30.24727 (17)0.9649 (2)0.08603 (7)0.0215 (4)
C40.25580 (16)0.7931 (2)0.05905 (7)0.0199 (3)
C50.09913 (17)1.0529 (2)0.15815 (7)0.0217 (4)
C60.04123 (19)1.2105 (3)0.18215 (8)0.0274 (4)
C70.0304 (2)1.2109 (3)0.23816 (8)0.0356 (5)
H7−0.00831.32060.25410.043*
C80.0765 (2)1.0501 (3)0.27056 (8)0.0381 (5)
H80.06901.04900.30890.046*
C90.1329 (2)0.8925 (3)0.24762 (8)0.0355 (5)
H90.16440.78230.27000.043*
C100.14409 (19)0.8941 (3)0.19169 (8)0.0284 (4)
H100.18330.78420.17610.034*
C110.36016 (18)1.1040 (3)0.10611 (7)0.0249 (4)
O20.48511 (16)1.0381 (3)0.10610 (10)0.0390 (6)0.845 (3)
C120.5990 (2)1.1697 (4)0.12467 (11)0.0315 (6)0.845 (3)
H12A0.56781.30770.11990.038*0.845 (3)
H12B0.67211.14890.10190.038*0.845 (3)
C130.6540 (3)1.1316 (5)0.18435 (12)0.0518 (8)0.845 (3)
H13A0.58321.16070.20700.078*0.845 (3)
H13B0.73381.21570.19600.078*0.845 (3)
H13C0.68120.99340.18920.078*0.845 (3)
O2'0.4728 (9)0.9900 (15)0.1298 (5)0.0390 (6)0.155 (3)
C12'0.5996 (11)1.0954 (19)0.1454 (7)0.0315 (6)0.155 (3)
H12C0.58601.20560.17040.038*0.155 (3)
H12D0.63091.14990.11200.038*0.155 (3)
C13'0.7072 (14)0.952 (2)0.1752 (7)0.0518 (8)0.155 (3)
H13D0.68470.91900.21170.078*0.155 (3)
H13E0.79791.01330.17960.078*0.155 (3)
H13F0.70760.83170.15300.078*0.155 (3)
C140.38686 (17)0.7050 (2)0.04419 (7)0.0225 (4)
C15−0.19178 (18)0.8142 (3)0.03716 (7)0.0255 (4)
H15−0.28840.80010.02850.031*
H10.146 (2)0.567 (3)0.0203 (9)0.039 (6)*
U11U22U33U12U13U23
Cl10.0546 (4)0.0261 (3)0.0533 (4)0.0094 (2)0.0228 (3)0.0025 (2)
F10.0217 (6)0.0361 (6)0.0564 (8)−0.0049 (5)0.0118 (5)−0.0233 (5)
F20.0250 (6)0.0366 (6)0.0418 (7)−0.0032 (4)0.0153 (5)0.0102 (5)
F30.0249 (6)0.0370 (6)0.0359 (6)0.0063 (5)0.0023 (5)0.0070 (5)
O10.0310 (8)0.0290 (7)0.0506 (9)−0.0071 (6)0.0063 (6)−0.0098 (6)
N10.0169 (7)0.0207 (7)0.0259 (8)−0.0011 (5)0.0038 (6)−0.0039 (6)
N20.0150 (7)0.0256 (7)0.0231 (7)0.0003 (5)0.0022 (6)−0.0043 (6)
N30.0169 (7)0.0317 (8)0.0293 (8)0.0022 (6)0.0026 (6)−0.0046 (6)
N40.0172 (7)0.0261 (8)0.0245 (8)−0.0008 (6)0.0017 (6)−0.0028 (6)
C10.0175 (8)0.0224 (8)0.0191 (8)−0.0011 (6)0.0022 (6)−0.0002 (6)
C20.0194 (8)0.0210 (8)0.0208 (8)−0.0021 (6)0.0022 (6)−0.0027 (6)
C30.0186 (8)0.0250 (8)0.0207 (8)−0.0015 (7)0.0030 (7)−0.0007 (6)
C40.0168 (8)0.0235 (8)0.0194 (8)−0.0023 (6)0.0030 (6)0.0023 (6)
C50.0177 (8)0.0269 (9)0.0205 (8)−0.0036 (7)0.0027 (7)−0.0028 (7)
C60.0251 (9)0.0283 (9)0.0295 (10)−0.0030 (7)0.0069 (7)−0.0045 (7)
C70.0325 (11)0.0440 (12)0.0329 (11)−0.0062 (9)0.0134 (8)−0.0141 (9)
C80.0311 (11)0.0631 (14)0.0207 (9)−0.0098 (10)0.0057 (8)−0.0034 (9)
C90.0281 (10)0.0525 (12)0.0260 (10)0.0015 (9)0.0043 (8)0.0104 (9)
C100.0249 (9)0.0341 (10)0.0263 (9)0.0022 (8)0.0046 (7)0.0019 (8)
C110.0215 (9)0.0318 (10)0.0217 (9)−0.0031 (7)0.0051 (7)−0.0037 (7)
O20.0174 (8)0.0325 (10)0.0652 (16)−0.0059 (7)0.0001 (8)−0.0180 (10)
C120.0184 (10)0.0282 (14)0.0467 (16)−0.0069 (9)0.0016 (10)−0.0065 (11)
C130.0329 (15)0.070 (2)0.0506 (17)−0.0184 (13)0.0010 (12)−0.0013 (15)
O2'0.0174 (8)0.0325 (10)0.0652 (16)−0.0059 (7)0.0001 (8)−0.0180 (10)
C12'0.0184 (10)0.0282 (14)0.0467 (16)−0.0069 (9)0.0016 (10)−0.0065 (11)
C13'0.0329 (15)0.070 (2)0.0506 (17)−0.0184 (13)0.0010 (12)−0.0013 (15)
C140.0197 (8)0.0227 (8)0.0258 (9)−0.0040 (6)0.0059 (7)−0.0004 (7)
C150.0165 (8)0.0313 (9)0.0282 (9)0.0003 (7)0.0020 (7)−0.0029 (7)
Cl1—C61.7407 (19)C7—H70.9500
F1—C141.3339 (19)C8—C91.369 (3)
F2—C141.3293 (19)C8—H80.9500
F3—C141.326 (2)C9—C101.387 (3)
O1—C111.202 (2)C9—H90.9500
N1—C11.359 (2)C10—H100.9500
N1—C41.377 (2)C11—O21.315 (2)
N1—H10.90 (2)C11—O2'1.404 (8)
N2—C11.329 (2)O2—C121.453 (3)
N2—N31.3744 (19)C12—C131.493 (4)
N2—C21.458 (2)C12—H12A0.9900
N3—C151.314 (2)C12—H12B0.9900
N4—C11.329 (2)C13—H13A0.9800
N4—C151.366 (2)C13—H13B0.9800
C2—C51.517 (2)C13—H13C0.9800
C2—C31.526 (2)O2'—C12'1.442 (9)
C2—H21.0000C12'—C13'1.539 (9)
C3—C41.351 (2)C12'—H12C0.9900
C3—C111.486 (2)C12'—H12D0.9900
C4—C141.524 (2)C13'—H13D0.9800
C5—C101.385 (2)C13'—H13E0.9800
C5—C61.389 (2)C13'—H13F0.9800
C6—C71.388 (3)C15—H150.9500
C7—C81.384 (3)
C1—N1—C4118.45 (14)C5—C10—C9121.27 (18)
C1—N1—H1116.7 (14)C5—C10—H10119.4
C4—N1—H1124.6 (14)C9—C10—H10119.4
C1—N2—N3109.72 (13)O1—C11—O2122.77 (17)
C1—N2—C2127.16 (14)O1—C11—O2'125.9 (5)
N3—N2—C2122.86 (13)O2—C11—O2'29.2 (5)
C15—N3—N2101.51 (14)O1—C11—C3121.07 (16)
C1—N4—C15101.41 (14)O2—C11—C3116.05 (16)
N4—C1—N2111.19 (15)O2'—C11—C3106.8 (4)
N4—C1—N1127.88 (15)C11—O2—C12118.11 (18)
N2—C1—N1120.91 (15)O2—C12—C13109.9 (2)
N2—C2—C5110.32 (13)O2—C12—H12A109.7
N2—C2—C3107.61 (13)C13—C12—H12A109.7
C5—C2—C3112.88 (14)O2—C12—H12B109.7
N2—C2—H2108.6C13—C12—H12B109.7
C5—C2—H2108.6H12A—C12—H12B108.2
C3—C2—H2108.6C11—O2'—C12'115.7 (8)
C4—C3—C11127.56 (16)O2'—C12'—C13'108.4 (10)
C4—C3—C2121.99 (15)O2'—C12'—H12C110.0
C11—C3—C2110.36 (14)C13'—C12'—H12C110.0
C3—C4—N1122.93 (16)O2'—C12'—H12D110.0
C3—C4—C14125.36 (15)C13'—C12'—H12D110.0
N1—C4—C14111.62 (14)H12C—C12'—H12D108.4
C10—C5—C6117.92 (16)C12'—C13'—H13D109.5
C10—C5—C2119.70 (15)C12'—C13'—H13E109.5
C6—C5—C2122.36 (15)H13D—C13'—H13E109.5
C7—C6—C5121.26 (18)C12'—C13'—H13F109.5
C7—C6—Cl1117.98 (15)H13D—C13'—H13F109.5
C5—C6—Cl1120.75 (14)H13E—C13'—H13F109.5
C8—C7—C6119.36 (18)F3—C14—F2107.78 (13)
C8—C7—H7120.3F3—C14—F1106.64 (14)
C6—C7—H7120.3F2—C14—F1106.11 (14)
C9—C8—C7120.29 (18)F3—C14—C4113.45 (14)
C9—C8—H8119.9F2—C14—C4111.87 (14)
C7—C8—H8119.9F1—C14—C4110.60 (13)
C8—C9—C10119.89 (19)N3—C15—N4116.16 (15)
C8—C9—H9120.1N3—C15—H15121.9
C10—C9—H9120.1N4—C15—H15121.9
C1—N2—N3—C15−0.87 (18)C2—C5—C6—Cl1−0.2 (2)
C2—N2—N3—C15−175.36 (15)C5—C6—C7—C8−0.9 (3)
C15—N4—C1—N2−0.70 (18)Cl1—C6—C7—C8178.59 (15)
C15—N4—C1—N1−179.05 (17)C6—C7—C8—C90.3 (3)
N3—N2—C1—N41.04 (19)C7—C8—C9—C100.1 (3)
C2—N2—C1—N4175.24 (15)C6—C5—C10—C9−0.5 (3)
N3—N2—C1—N1179.53 (15)C2—C5—C10—C9−178.84 (16)
C2—N2—C1—N1−6.3 (3)C8—C9—C10—C50.0 (3)
C4—N1—C1—N4175.37 (16)C4—C3—C11—O1163.90 (19)
C4—N1—C1—N2−2.8 (2)C2—C3—C11—O1−12.7 (2)
C1—N2—C2—C5−112.47 (18)C4—C3—C11—O2−12.5 (3)
N3—N2—C2—C561.02 (19)C2—C3—C11—O2170.95 (18)
C1—N2—C2—C311.1 (2)C4—C3—C11—O2'−42.3 (6)
N3—N2—C2—C3−175.44 (14)C2—C3—C11—O2'141.1 (6)
N2—C2—C3—C4−8.1 (2)O1—C11—O2—C122.9 (3)
C5—C2—C3—C4113.82 (18)O2'—C11—O2—C12−103.3 (10)
N2—C2—C3—C11168.67 (13)C3—C11—O2—C12179.19 (18)
C5—C2—C3—C11−69.36 (18)C11—O2—C12—C1396.5 (3)
C11—C3—C4—N1−175.26 (16)O1—C11—O2'—C12'−35.7 (14)
C2—C3—C4—N11.0 (3)O2—C11—O2'—C12'58.5 (11)
C11—C3—C4—C140.8 (3)C3—C11—O2'—C12'172.2 (10)
C2—C3—C4—C14177.07 (15)C11—O2'—C12'—C13'174.9 (12)
C1—N1—C4—C35.2 (2)C3—C4—C14—F366.0 (2)
C1—N1—C4—C14−171.36 (14)N1—C4—C14—F3−117.51 (15)
N2—C2—C5—C1077.54 (19)C3—C4—C14—F2−56.2 (2)
C3—C2—C5—C10−42.9 (2)N1—C4—C14—F2120.30 (15)
N2—C2—C5—C6−100.70 (18)C3—C4—C14—F1−174.22 (16)
C3—C2—C5—C6138.88 (17)N1—C4—C14—F12.25 (19)
C10—C5—C6—C70.9 (3)N2—N3—C15—N40.5 (2)
C2—C5—C6—C7179.21 (16)C1—N4—C15—N30.1 (2)
C10—C5—C6—Cl1−178.49 (13)
D—H···AD—HH···AD···AD—H···A
N1—H1···N4i0.90 (2)1.96 (2)2.843 (2)166.3 (19)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1⋯N4i0.90 (2)1.96 (2)2.843 (2)166.3 (19)

Symmetry code: (i) .

  4 in total

1.  Synthesis and SAR of [1,2,4]triazolo[1,5-a]pyrimidines, a class of anticancer agents with a unique mechanism of tubulin inhibition.

Authors:  Nan Zhang; Semiramis Ayral-Kaloustian; Thai Nguyen; Jay Afragola; Richard Hernandez; Judy Lucas; James Gibbons; Carl Beyer
Journal:  J Med Chem       Date:  2007-01-25       Impact factor: 7.446

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  Identification of a metabolically stable triazolopyrimidine-based dihydroorotate dehydrogenase inhibitor with antimalarial activity in mice.

Authors:  Ramesh Gujjar; Alka Marwaha; Farah El Mazouni; John White; Karen L White; Sharon Creason; David M Shackleford; Jeffrey Baldwin; William N Charman; Frederick S Buckner; Susan Charman; Pradipsinh K Rathod; Margaret A Phillips
Journal:  J Med Chem       Date:  2009-04-09       Impact factor: 7.446

4.  Discovery and optimization of chromenotriazolopyrimidines as potent inhibitors of the mouse double minute 2-tumor protein 53 protein-protein interaction.

Authors:  John G Allen; Matthew P Bourbeau; G Erich Wohlhieter; Michael D Bartberger; Klaus Michelsen; Randall Hungate; Robert C Gadwood; Rick D Gaston; Bruce Evans; Larry W Mann; Michael E Matison; Stephen Schneider; Xin Huang; Dongyin Yu; Paul S Andrews; Andreas Reichelt; Alexander M Long; Peter Yakowec; Evelyn Y Yang; Tani Ann Lee; Jonathan D Oliner
Journal:  J Med Chem       Date:  2009-11-26       Impact factor: 7.446

  4 in total

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