Literature DB >> 21587598

2-Dibutyl-amino-1-(2,7-dichloro-9H-fluoren-4-yl)ethanol.

Hoong-Kun Fun, Chin Sing Yeap, A M Vijesh, Arun M Isloor, P K Vasudeva.   

Abstract

In the title compound, C(23)H(29)Cl(2)NO, the fluorene ring is essentially planar, with a maximum deviation from the mean plane of 0.041 (1) Å. The amine group adopts a pyramidal configuration, the sum of the bond angles being 336.2 (3)°. In the crystal, the mol-ecules are linked into dimers by inter-molecular O-H⋯N and C-H⋯O hydrogen bonds. Weak C-H⋯π and π-π [centroid-centroid distance = 3.7544 (7) Å] inter-actions are also observed.

Entities:  

Year:  2010        PMID: 21587598      PMCID: PMC2983289          DOI: 10.1107/S1600536810037566

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background and applications of fluorene derivatives, see: Reinhardt et al. (1998 ▶); Yao & Belfield (2005 ▶); Werts et al. (2004 ▶); Belfield et al. (2009 ▶); Sun et al. (2009 ▶); Park et al. (2009 ▶); Kotaka et al. (2010 ▶); Wong et al. (2005 ▶); Beulter et al. (2007 ▶). For the stability of the temperature controller used in the data collection, see: Cosier & Glazer (1986 ▶).

Experimental

Crystal data

C23H29Cl2NO M = 406.37 Triclinic, a = 10.0009 (4) Å b = 10.8847 (4) Å c = 11.0853 (4) Å α = 68.161 (1)° β = 70.999 (1)° γ = 88.904 (1)° V = 1051.90 (7) Å3 Z = 2 Mo Kα radiation μ = 0.32 mm−1 T = 100 K 0.34 × 0.28 × 0.20 mm

Data collection

Bruker APEXII DUO CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2009 ▶) T min = 0.900, T max = 0.937 19180 measured reflections 6052 independent reflections 5448 reflections with I > 2σ(I) R int = 0.025

Refinement

R[F 2 > 2σ(F 2)] = 0.035 wR(F 2) = 0.135 S = 1.15 6052 reflections 250 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.65 e Å−3 Δρmin = −0.39 e Å−3 Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810037566/fj2335sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810037566/fj2335Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C23H29Cl2NOZ = 2
Mr = 406.37F(000) = 432
Triclinic, P1Dx = 1.283 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 10.0009 (4) ÅCell parameters from 9903 reflections
b = 10.8847 (4) Åθ = 2.8–35.1°
c = 11.0853 (4) ŵ = 0.32 mm1
α = 68.161 (1)°T = 100 K
β = 70.999 (1)°Block, colourless
γ = 88.904 (1)°0.34 × 0.28 × 0.20 mm
V = 1051.90 (7) Å3
Bruker APEXII DUO CCD area-detector diffractometer6052 independent reflections
Radiation source: fine-focus sealed tube5448 reflections with I > 2σ(I)
graphiteRint = 0.025
φ and ω scansθmax = 30.0°, θmin = 2.0°
Absorption correction: multi-scan (SADABS; Bruker, 2009)h = −14→14
Tmin = 0.900, Tmax = 0.937k = −13→15
19180 measured reflectionsl = −15→15
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.035Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.135H atoms treated by a mixture of independent and constrained refinement
S = 1.15w = 1/[σ2(Fo2) + (0.0878P)2 + 0.1785P] where P = (Fo2 + 2Fc2)/3
6052 reflections(Δ/σ)max = 0.001
250 parametersΔρmax = 0.65 e Å3
0 restraintsΔρmin = −0.39 e Å3
Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K.
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cl1−0.09361 (3)0.21897 (3)0.88976 (3)0.02143 (10)
Cl20.91082 (3)0.72785 (3)0.47680 (3)0.02310 (10)
O10.34512 (9)−0.00277 (8)0.98844 (9)0.01700 (17)
N10.61607 (10)0.00676 (9)0.76424 (10)0.01474 (18)
C10.37158 (11)0.35655 (11)0.76122 (11)0.01307 (19)
C20.51590 (11)0.42961 (11)0.70234 (11)0.0137 (2)
C30.64840 (12)0.38878 (11)0.70641 (12)0.0157 (2)
H3A0.65570.30020.75570.019*
C40.76946 (12)0.48193 (12)0.63599 (12)0.0174 (2)
H4A0.85800.45550.63800.021*
C50.75782 (12)0.61409 (12)0.56297 (12)0.0170 (2)
C60.62725 (12)0.65831 (11)0.55809 (11)0.0168 (2)
H6A0.62080.74720.50930.020*
C70.50725 (12)0.56512 (11)0.62855 (11)0.0147 (2)
C80.35494 (12)0.58751 (11)0.64065 (12)0.0166 (2)
H8A0.32110.64720.68790.020*
H8B0.34460.62390.55030.020*
C90.27675 (11)0.44936 (11)0.72460 (11)0.0143 (2)
C100.13297 (12)0.41040 (12)0.76341 (11)0.0161 (2)
H10A0.07090.47190.73900.019*
C110.08464 (11)0.27561 (12)0.84032 (12)0.0160 (2)
C120.17583 (11)0.18198 (11)0.87841 (11)0.0154 (2)
H12A0.13990.09280.93010.019*
C130.32054 (11)0.22131 (11)0.83943 (11)0.01356 (19)
C140.41897 (11)0.11665 (11)0.87700 (11)0.0141 (2)
H14A0.48980.15300.90230.017*
C150.49599 (12)0.08479 (11)0.74948 (12)0.0154 (2)
H15A0.42840.03520.73360.018*
H15B0.53130.16760.66910.018*
C160.74550 (12)0.06358 (12)0.63995 (12)0.0162 (2)
H16A0.82490.01920.66110.019*
H16B0.76520.15690.62180.019*
C170.74054 (12)0.05380 (12)0.50737 (12)0.0188 (2)
H17A0.7301−0.03930.52090.023*
H17B0.65820.09290.48780.023*
C180.87478 (13)0.12510 (13)0.38423 (12)0.0220 (2)
H18A0.88380.21840.37020.026*
H18B0.95700.08730.40530.026*
C190.87480 (18)0.11485 (18)0.25151 (15)0.0351 (3)
H19A0.96370.15680.17910.053*
H19B0.79820.15850.22590.053*
H19C0.86250.02270.26550.053*
C200.57620 (12)−0.13645 (11)0.80309 (12)0.0167 (2)
H20A0.5521−0.14760.72950.020*
H20B0.4922−0.16800.88590.020*
C210.69500 (13)−0.22106 (12)0.82942 (12)0.0184 (2)
H21A0.7679−0.20820.74150.022*
H21B0.7381−0.19120.88200.022*
C220.64153 (15)−0.36850 (13)0.90795 (13)0.0229 (2)
H22A0.5982−0.39820.85540.027*
H22B0.5687−0.38130.99590.027*
C230.7601 (2)−0.45345 (16)0.93422 (16)0.0342 (3)
H23A0.7230−0.54600.97680.051*
H23B0.7965−0.43090.99440.051*
H23C0.8353−0.43690.84800.051*
H1O10.359 (2)0.001 (2)1.062 (2)0.036 (5)*
U11U22U33U12U13U23
Cl10.01152 (14)0.02463 (17)0.02342 (16)0.00024 (10)−0.00496 (11)−0.00501 (12)
Cl20.01794 (15)0.02340 (17)0.02422 (16)−0.00603 (11)−0.00230 (11)−0.00900 (12)
O10.0163 (4)0.0142 (4)0.0161 (4)−0.0002 (3)−0.0040 (3)−0.0025 (3)
N10.0124 (4)0.0129 (4)0.0171 (4)0.0023 (3)−0.0027 (3)−0.0058 (3)
C10.0123 (4)0.0138 (5)0.0132 (4)0.0025 (3)−0.0043 (4)−0.0055 (4)
C20.0134 (5)0.0145 (5)0.0139 (4)0.0019 (4)−0.0047 (4)−0.0063 (4)
C30.0145 (5)0.0156 (5)0.0176 (5)0.0020 (4)−0.0061 (4)−0.0065 (4)
C40.0135 (5)0.0205 (5)0.0195 (5)0.0011 (4)−0.0053 (4)−0.0095 (4)
C50.0152 (5)0.0194 (5)0.0157 (5)−0.0027 (4)−0.0029 (4)−0.0078 (4)
C60.0184 (5)0.0150 (5)0.0161 (5)0.0000 (4)−0.0056 (4)−0.0052 (4)
C70.0156 (5)0.0146 (5)0.0141 (5)0.0020 (4)−0.0048 (4)−0.0060 (4)
C80.0158 (5)0.0141 (5)0.0184 (5)0.0031 (4)−0.0061 (4)−0.0045 (4)
C90.0139 (5)0.0147 (5)0.0145 (5)0.0034 (4)−0.0048 (4)−0.0060 (4)
C100.0136 (5)0.0177 (5)0.0167 (5)0.0050 (4)−0.0057 (4)−0.0061 (4)
C110.0115 (4)0.0183 (5)0.0166 (5)0.0012 (4)−0.0036 (4)−0.0061 (4)
C120.0126 (5)0.0153 (5)0.0162 (5)0.0016 (4)−0.0038 (4)−0.0048 (4)
C130.0125 (4)0.0140 (5)0.0135 (4)0.0029 (4)−0.0038 (4)−0.0053 (4)
C140.0126 (4)0.0118 (5)0.0150 (5)0.0014 (3)−0.0033 (4)−0.0034 (4)
C150.0138 (5)0.0147 (5)0.0173 (5)0.0033 (4)−0.0050 (4)−0.0061 (4)
C160.0126 (5)0.0163 (5)0.0174 (5)0.0007 (4)−0.0021 (4)−0.0066 (4)
C170.0180 (5)0.0181 (5)0.0176 (5)0.0001 (4)−0.0025 (4)−0.0070 (4)
C180.0179 (5)0.0252 (6)0.0183 (5)0.0014 (4)−0.0027 (4)−0.0064 (4)
C190.0343 (8)0.0468 (9)0.0195 (6)−0.0015 (6)−0.0029 (5)−0.0130 (6)
C200.0168 (5)0.0130 (5)0.0183 (5)0.0016 (4)−0.0042 (4)−0.0057 (4)
C210.0204 (5)0.0158 (5)0.0180 (5)0.0054 (4)−0.0047 (4)−0.0073 (4)
C220.0339 (7)0.0158 (5)0.0187 (5)0.0064 (5)−0.0087 (5)−0.0069 (4)
C230.0539 (9)0.0255 (7)0.0317 (7)0.0212 (6)−0.0222 (7)−0.0146 (6)
Cl1—C111.7358 (11)C13—C141.5202 (15)
Cl2—C51.7400 (12)C14—C151.5354 (15)
O1—C141.4175 (13)C14—H14A0.9800
O1—H1O10.89 (2)C15—H15A0.9700
N1—C151.4751 (14)C15—H15B0.9700
N1—C201.4788 (14)C16—C171.5290 (16)
N1—C161.4805 (14)C16—H16A0.9700
C1—C131.4037 (15)C16—H16B0.9700
C1—C91.4119 (14)C17—C181.5252 (16)
C1—C21.4785 (15)C17—H17A0.9700
C2—C31.3989 (15)C17—H17B0.9700
C2—C71.4127 (15)C18—C191.5162 (19)
C3—C41.3950 (16)C18—H18A0.9700
C3—H3A0.9300C18—H18B0.9700
C4—C51.3881 (17)C19—H19A0.9600
C4—H4A0.9300C19—H19B0.9600
C5—C61.3936 (16)C19—H19C0.9600
C6—C71.3878 (15)C20—C211.5261 (16)
C6—H6A0.9300C20—H20A0.9700
C7—C81.5082 (15)C20—H20B0.9700
C8—C91.5062 (16)C21—C221.5197 (17)
C8—H8A0.9700C21—H21A0.9700
C8—H8B0.9700C21—H21B0.9700
C9—C101.3847 (15)C22—C231.5259 (19)
C10—C111.3932 (16)C22—H22A0.9700
C10—H10A0.9300C22—H22B0.9700
C11—C121.3941 (15)C23—H23A0.9600
C12—C131.3940 (15)C23—H23B0.9600
C12—H12A0.9300C23—H23C0.9600
C14—O1—H1O1105.1 (14)N1—C15—H15A109.0
C15—N1—C20111.58 (9)C14—C15—H15A109.0
C15—N1—C16111.49 (9)N1—C15—H15B109.0
C20—N1—C16113.09 (9)C14—C15—H15B109.0
C13—C1—C9119.98 (10)H15A—C15—H15B107.8
C13—C1—C2132.12 (10)N1—C16—C17116.53 (9)
C9—C1—C2107.90 (9)N1—C16—H16A108.2
C3—C2—C7119.17 (10)C17—C16—H16A108.2
C3—C2—C1132.54 (10)N1—C16—H16B108.2
C7—C2—C1108.28 (9)C17—C16—H16B108.2
C4—C3—C2119.50 (11)H16A—C16—H16B107.3
C4—C3—H3A120.2C18—C17—C16111.72 (10)
C2—C3—H3A120.2C18—C17—H17A109.3
C5—C4—C3119.99 (10)C16—C17—H17A109.3
C5—C4—H4A120.0C18—C17—H17B109.3
C3—C4—H4A120.0C16—C17—H17B109.3
C4—C5—C6121.95 (10)H17A—C17—H17B107.9
C4—C5—Cl2118.82 (9)C19—C18—C17113.12 (11)
C6—C5—Cl2119.23 (9)C19—C18—H18A109.0
C7—C6—C5117.74 (10)C17—C18—H18A109.0
C7—C6—H6A121.1C19—C18—H18B109.0
C5—C6—H6A121.1C17—C18—H18B109.0
C6—C7—C2121.64 (10)H18A—C18—H18B107.8
C6—C7—C8128.05 (10)C18—C19—H19A109.5
C2—C7—C8110.31 (10)C18—C19—H19B109.5
C9—C8—C7102.80 (9)H19A—C19—H19B109.5
C9—C8—H8A111.2C18—C19—H19C109.5
C7—C8—H8A111.2H19A—C19—H19C109.5
C9—C8—H8B111.2H19B—C19—H19C109.5
C7—C8—H8B111.2N1—C20—C21112.70 (9)
H8A—C8—H8B109.1N1—C20—H20A109.1
C10—C9—C1121.57 (10)C21—C20—H20A109.1
C10—C9—C8127.77 (10)N1—C20—H20B109.1
C1—C9—C8110.66 (9)C21—C20—H20B109.1
C9—C10—C11117.54 (10)H20A—C20—H20B107.8
C9—C10—H10A121.2C22—C21—C20112.38 (10)
C11—C10—H10A121.2C22—C21—H21A109.1
C10—C11—C12122.07 (10)C20—C21—H21A109.1
C10—C11—Cl1120.11 (9)C22—C21—H21B109.1
C12—C11—Cl1117.81 (9)C20—C21—H21B109.1
C13—C12—C11120.35 (10)H21A—C21—H21B107.9
C13—C12—H12A119.8C21—C22—C23112.52 (12)
C11—C12—H12A119.8C21—C22—H22A109.1
C12—C13—C1118.49 (10)C23—C22—H22A109.1
C12—C13—C14119.41 (10)C21—C22—H22B109.1
C1—C13—C14122.04 (9)C23—C22—H22B109.1
O1—C14—C13112.68 (9)H22A—C22—H22B107.8
O1—C14—C15108.89 (9)C22—C23—H23A109.5
C13—C14—C15108.43 (9)C22—C23—H23B109.5
O1—C14—H14A108.9H23A—C23—H23B109.5
C13—C14—H14A108.9C22—C23—H23C109.5
C15—C14—H14A108.9H23A—C23—H23C109.5
N1—C15—C14112.91 (9)H23B—C23—H23C109.5
C13—C1—C2—C3−0.9 (2)C9—C10—C11—C120.31 (17)
C9—C1—C2—C3179.75 (11)C9—C10—C11—Cl1−178.74 (8)
C13—C1—C2—C7178.18 (11)C10—C11—C12—C13−0.25 (18)
C9—C1—C2—C7−1.15 (12)Cl1—C11—C12—C13178.83 (9)
C7—C2—C3—C4−0.98 (16)C11—C12—C13—C1−0.12 (17)
C1—C2—C3—C4178.04 (11)C11—C12—C13—C14−177.47 (10)
C2—C3—C4—C50.21 (17)C9—C1—C13—C120.40 (16)
C3—C4—C5—C60.51 (17)C2—C1—C13—C12−178.86 (11)
C3—C4—C5—Cl2179.76 (9)C9—C1—C13—C14177.68 (10)
C4—C5—C6—C7−0.40 (17)C2—C1—C13—C14−1.58 (18)
Cl2—C5—C6—C7−179.66 (8)C12—C13—C14—O1−20.91 (14)
C5—C6—C7—C2−0.40 (16)C1—C13—C14—O1161.83 (10)
C5—C6—C7—C8179.25 (10)C12—C13—C14—C1599.69 (11)
C3—C2—C7—C61.10 (16)C1—C13—C14—C15−77.56 (13)
C1—C2—C7—C6−178.14 (10)C20—N1—C15—C1499.92 (11)
C3—C2—C7—C8−178.62 (10)C16—N1—C15—C14−132.56 (10)
C1—C2—C7—C82.15 (12)O1—C14—C15—N1−69.47 (11)
C6—C7—C8—C9178.09 (11)C13—C14—C15—N1167.61 (9)
C2—C7—C8—C9−2.22 (12)C15—N1—C16—C17−68.12 (12)
C13—C1—C9—C10−0.34 (16)C20—N1—C16—C1758.58 (13)
C2—C1—C9—C10179.08 (10)N1—C16—C17—C18175.50 (10)
C13—C1—C9—C8−179.72 (10)C16—C17—C18—C19178.77 (12)
C2—C1—C9—C8−0.29 (12)C15—N1—C20—C21−175.79 (9)
C7—C8—C9—C10−177.83 (11)C16—N1—C20—C2157.56 (12)
C7—C8—C9—C11.49 (12)N1—C20—C21—C22163.47 (10)
C1—C9—C10—C11−0.01 (17)C20—C21—C22—C23179.89 (11)
C8—C9—C10—C11179.25 (11)
Cg2 and Cg3 are the centroids of the C2–C7 and C1/C9–C13 benzene rings, respectively.
D—H···AD—HH···AD···AD—H···A
O1—H1O1···N1i0.89 (2)1.99 (2)2.8762 (13)175 (2)
C14—H14A···O1i0.982.573.1831 (15)121
C8—H8A···Cg2ii0.972.983.6293 (13)126
C22—H22A···Cg2iii0.972.823.6730 (15)148
C23—H23B···Cg3i0.962.923.7920 (18)152
Table 1

Hydrogen-bond geometry (Å, °)

Cg2 and Cg3 are the centroids of the C2–C7 and C1/C9–C13 benzene rings, respectively.

D—H⋯AD—HH⋯ADAD—H⋯A
O1—H1O1⋯N1i0.89 (2)1.99 (2)2.8762 (13)175 (2)
C14—H14A⋯O1i0.982.573.1831 (15)121
C8—H8ACg2ii0.972.983.6293 (13)126
C22—H22ACg2iii0.972.823.6730 (15)148
C23—H23BCg3i0.962.923.7920 (18)152

Symmetry codes: (i) ; (ii) ; (iii) .

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Authors:  Martinus H V Werts; Said Gmouh; Olivier Mongin; Thomas Pons; Mireille Blanchard-Desce
Journal:  J Am Chem Soc       Date:  2004-12-22       Impact factor: 15.419

2.  Nonconjugated hybrid of carbazole and fluorene: a novel host material for highly efficient green and red phosphorescent OLEDs.

Authors:  Ken-Tsung Wong; You-Ming Chen; Yu-Ting Lin; Hai-Ching Su; Chung-Chih Wu
Journal:  Org Lett       Date:  2005-11-24       Impact factor: 6.005

3.  Synthesis of two-photon absorbing unsymmetrical branched chromophores through direct tris(bromomethylation) of fluorene.

Authors:  Sheng Yao; Kevin D Belfield
Journal:  J Org Chem       Date:  2005-06-24       Impact factor: 4.354

4.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

5.  Novel 7-(dimethylamino)fluorene-based fluorescent probes and their binding to human serum albumin.

Authors:  Kwanghee Koh Park; Joon Woo Park; Andrew D Hamilton
Journal:  Org Biomol Chem       Date:  2009-08-14       Impact factor: 3.876

6.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  6 in total
  2 in total

1.  Bioactive fluorenes. Part III: 2,7-dichloro-9H-fluorene-based thiazolidinone and azetidinone analogues as anticancer and antimicrobial against multidrug resistant strains agents.

Authors:  Essam M Hussein; Reem I Alsantali; Moataz Morad; Rami J Obaid; Hatem M Altass; Ali Sayqal; Mohamed A S Abourehab; Amal A Elkhawaga; Ahmed S M Aboraia; Saleh A Ahmed
Journal:  BMC Chem       Date:  2020-06-25

2.  Bioactive fluorenes. part I. Synthesis, pharmacological study and molecular docking of novel dihydrofolate reductase inhibitors based-2,7-dichlorofluorene.

Authors:  Essam M Hussein; Reem I Alsantali; Shimaa M Abd El-Galil; Rami J Obaid; Ahmed Alharbi; Mohamed A S Abourehab; Saleh A Ahmed
Journal:  Heliyon       Date:  2019-06-26
  2 in total

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