| Literature DB >> 21587586 |
Yi-Han Tan, Siang Guan Teoh, Wan-Sin Loh, Hoong-Kun Fun.
Abstract
The title Schiff base compound, C(13)Entities:
Year: 2010 PMID: 21587586 PMCID: PMC2983168 DOI: 10.1107/S1600536810036949
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C13H11N3O5S | |
| Monoclinic, | Mo |
| Hall symbol: -P 2ybc | Cell parameters from 9950 reflections |
| θ = 2.8–35.5° | |
| µ = 0.27 mm−1 | |
| β = 131.544 (1)° | Plate, orange |
| 0.41 × 0.27 × 0.06 mm | |
| Bruker SMART APEXII CCD area-detector diffractometer | 4825 independent reflections |
| Radiation source: fine-focus sealed tube | 4104 reflections with |
| graphite | |
| φ and ω scans | θmax = 32.5°, θmin = 2.8° |
| Absorption correction: multi-scan ( | |
| 29377 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 4825 reflections | (Δ/σ)max = 0.002 |
| 211 parameters | Δρmax = 0.60 e Å−3 |
| 0 restraints | Δρmin = −0.43 e Å−3 |
| Experimental. The crystal was placed in the cold stream of an Oxford Cyrosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K. |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| S1 | 0.25811 (6) | 0.770137 (11) | 0.29838 (4) | 0.01433 (8) | |
| O1 | 0.69814 (19) | 1.06412 (4) | 0.38905 (13) | 0.01833 (18) | |
| O2 | 1.2322 (2) | 1.14670 (4) | 0.11034 (15) | 0.0251 (2) | |
| O3 | 1.1687 (2) | 1.06896 (4) | 0.02207 (13) | 0.0217 (2) | |
| O4 | 0.46897 (19) | 0.73446 (4) | 0.38253 (15) | 0.0264 (2) | |
| O5 | 0.1385 (2) | 0.77870 (4) | 0.37367 (14) | 0.0243 (2) | |
| N1 | 0.6474 (2) | 0.97162 (4) | 0.29501 (13) | 0.01443 (19) | |
| N2 | 0.0283 (2) | 0.75128 (4) | 0.09717 (14) | 0.01538 (19) | |
| N3 | 1.1534 (2) | 1.10368 (4) | 0.09747 (14) | 0.0166 (2) | |
| C1 | 0.8033 (2) | 1.07306 (5) | 0.31518 (15) | 0.0146 (2) | |
| C2 | 0.8745 (2) | 1.12251 (5) | 0.31389 (16) | 0.0169 (2) | |
| H2A | 0.8429 | 1.1487 | 0.3599 | 0.020* | |
| C3 | 0.9919 (2) | 1.13262 (5) | 0.24433 (16) | 0.0167 (2) | |
| H3A | 1.0412 | 1.1654 | 0.2442 | 0.020* | |
| C4 | 1.0352 (2) | 1.09290 (5) | 0.17442 (15) | 0.0142 (2) | |
| C5 | 0.9623 (2) | 1.04378 (5) | 0.17048 (15) | 0.0146 (2) | |
| H5A | 0.9913 | 1.0181 | 0.1215 | 0.018* | |
| C6 | 0.8442 (2) | 1.03309 (5) | 0.24119 (15) | 0.0139 (2) | |
| C7 | 0.7632 (2) | 0.98178 (5) | 0.23515 (16) | 0.0158 (2) | |
| H7A | 0.7949 | 0.9561 | 0.1879 | 0.019* | |
| C8 | 0.5618 (2) | 0.92230 (5) | 0.29004 (15) | 0.0135 (2) | |
| C9 | 0.4354 (2) | 0.91795 (5) | 0.35687 (16) | 0.0152 (2) | |
| H9A | 0.4130 | 0.9465 | 0.4000 | 0.018* | |
| C10 | 0.3425 (2) | 0.87159 (5) | 0.35986 (16) | 0.0158 (2) | |
| H10A | 0.2583 | 0.8689 | 0.4045 | 0.019* | |
| C11 | 0.3773 (2) | 0.82917 (5) | 0.29516 (15) | 0.0139 (2) | |
| C12 | 0.5046 (2) | 0.83273 (5) | 0.22825 (16) | 0.0163 (2) | |
| H12A | 0.5280 | 0.8040 | 0.1862 | 0.020* | |
| C13 | 0.5958 (2) | 0.87914 (5) | 0.22483 (16) | 0.0164 (2) | |
| H13A | 0.6792 | 0.8818 | 0.1796 | 0.020* | |
| H2N2 | 0.074 (4) | 0.7439 (7) | 0.041 (3) | 0.028 (5)* | |
| H1N2 | −0.119 (4) | 0.7655 (8) | 0.038 (3) | 0.030 (5)* | |
| H1O1 | 0.655 (5) | 1.0290 (11) | 0.368 (4) | 0.068 (8)* |
| S1 | 0.01492 (14) | 0.01229 (14) | 0.01464 (13) | −0.00158 (10) | 0.00933 (11) | 0.00082 (9) |
| O1 | 0.0243 (5) | 0.0160 (5) | 0.0229 (4) | 0.0000 (4) | 0.0191 (4) | −0.0007 (3) |
| O2 | 0.0303 (5) | 0.0155 (5) | 0.0373 (5) | −0.0009 (4) | 0.0257 (5) | 0.0052 (4) |
| O3 | 0.0270 (5) | 0.0219 (5) | 0.0227 (4) | −0.0038 (4) | 0.0192 (4) | −0.0036 (4) |
| O4 | 0.0152 (4) | 0.0161 (5) | 0.0320 (5) | 0.0019 (4) | 0.0090 (4) | 0.0079 (4) |
| O5 | 0.0372 (6) | 0.0225 (5) | 0.0267 (5) | −0.0090 (4) | 0.0268 (5) | −0.0048 (4) |
| N1 | 0.0162 (4) | 0.0123 (5) | 0.0157 (4) | −0.0014 (4) | 0.0110 (4) | −0.0003 (3) |
| N2 | 0.0137 (4) | 0.0156 (5) | 0.0161 (4) | −0.0005 (4) | 0.0096 (4) | −0.0019 (4) |
| N3 | 0.0167 (5) | 0.0155 (5) | 0.0175 (4) | 0.0006 (4) | 0.0112 (4) | 0.0032 (4) |
| C1 | 0.0147 (5) | 0.0149 (5) | 0.0142 (4) | 0.0010 (4) | 0.0096 (4) | 0.0005 (4) |
| C2 | 0.0200 (5) | 0.0117 (5) | 0.0197 (5) | 0.0014 (4) | 0.0134 (5) | −0.0002 (4) |
| C3 | 0.0170 (5) | 0.0134 (5) | 0.0181 (5) | 0.0001 (4) | 0.0110 (5) | 0.0010 (4) |
| C4 | 0.0148 (5) | 0.0132 (5) | 0.0146 (5) | −0.0003 (4) | 0.0098 (4) | 0.0011 (4) |
| C5 | 0.0179 (5) | 0.0118 (5) | 0.0154 (5) | −0.0005 (4) | 0.0116 (4) | −0.0002 (4) |
| C6 | 0.0165 (5) | 0.0118 (5) | 0.0143 (4) | −0.0007 (4) | 0.0105 (4) | −0.0006 (4) |
| C7 | 0.0195 (5) | 0.0134 (5) | 0.0171 (5) | −0.0009 (4) | 0.0132 (5) | −0.0005 (4) |
| C8 | 0.0136 (5) | 0.0122 (5) | 0.0137 (4) | −0.0007 (4) | 0.0087 (4) | −0.0002 (4) |
| C9 | 0.0183 (5) | 0.0127 (5) | 0.0185 (5) | −0.0005 (4) | 0.0138 (5) | −0.0016 (4) |
| C10 | 0.0173 (5) | 0.0158 (6) | 0.0178 (5) | −0.0015 (4) | 0.0132 (5) | −0.0012 (4) |
| C11 | 0.0143 (5) | 0.0129 (5) | 0.0139 (4) | −0.0017 (4) | 0.0091 (4) | −0.0005 (4) |
| C12 | 0.0196 (5) | 0.0138 (5) | 0.0187 (5) | −0.0021 (4) | 0.0140 (5) | −0.0030 (4) |
| C13 | 0.0202 (5) | 0.0146 (6) | 0.0199 (5) | −0.0020 (4) | 0.0157 (5) | −0.0022 (4) |
| S1—O4 | 1.4301 (10) | C3—C4 | 1.3958 (17) |
| S1—O5 | 1.4408 (10) | C3—H3A | 0.9300 |
| S1—N2 | 1.5980 (11) | C4—C5 | 1.3822 (17) |
| S1—C11 | 1.7689 (12) | C5—C6 | 1.4014 (15) |
| O1—C1 | 1.3417 (14) | C5—H5A | 0.9300 |
| O1—H1O1 | 0.96 (3) | C6—C7 | 1.4513 (17) |
| O2—N3 | 1.2278 (14) | C7—H7A | 0.9300 |
| O3—N3 | 1.2345 (14) | C8—C9 | 1.3951 (15) |
| N1—C7 | 1.2892 (15) | C8—C13 | 1.4068 (16) |
| N1—C8 | 1.4160 (16) | C9—C10 | 1.3881 (17) |
| N2—H2N2 | 0.83 (2) | C9—H9A | 0.9300 |
| N2—H1N2 | 0.84 (2) | C10—C11 | 1.3908 (17) |
| N3—C4 | 1.4576 (15) | C10—H10A | 0.9300 |
| C1—C2 | 1.3982 (17) | C11—C12 | 1.3999 (16) |
| C1—C6 | 1.4181 (16) | C12—C13 | 1.3855 (17) |
| C2—C3 | 1.3837 (17) | C12—H12A | 0.9300 |
| C2—H2A | 0.9300 | C13—H13A | 0.9300 |
| O4—S1—O5 | 119.05 (7) | C4—C5—H5A | 120.4 |
| O4—S1—N2 | 106.97 (6) | C6—C5—H5A | 120.4 |
| O5—S1—N2 | 106.71 (6) | C5—C6—C1 | 118.97 (11) |
| O4—S1—C11 | 107.71 (6) | C5—C6—C7 | 119.61 (10) |
| O5—S1—C11 | 106.92 (6) | C1—C6—C7 | 121.42 (10) |
| N2—S1—C11 | 109.23 (6) | N1—C7—C6 | 120.34 (11) |
| C1—O1—H1O1 | 104.2 (17) | N1—C7—H7A | 119.8 |
| C7—N1—C8 | 122.45 (11) | C6—C7—H7A | 119.8 |
| S1—N2—H2N2 | 115.9 (13) | C9—C8—C13 | 119.57 (11) |
| S1—N2—H1N2 | 117.2 (14) | C9—C8—N1 | 115.21 (10) |
| H2N2—N2—H1N2 | 115.7 (19) | C13—C8—N1 | 125.21 (10) |
| O2—N3—O3 | 123.25 (11) | C10—C9—C8 | 120.88 (11) |
| O2—N3—C4 | 118.61 (11) | C10—C9—H9A | 119.6 |
| O3—N3—C4 | 118.14 (10) | C8—C9—H9A | 119.6 |
| O1—C1—C2 | 118.81 (11) | C9—C10—C11 | 119.06 (10) |
| O1—C1—C6 | 120.75 (11) | C9—C10—H10A | 120.5 |
| C2—C1—C6 | 120.44 (11) | C11—C10—H10A | 120.5 |
| C3—C2—C1 | 120.11 (11) | C10—C11—C12 | 120.90 (11) |
| C3—C2—H2A | 119.9 | C10—C11—S1 | 119.05 (9) |
| C1—C2—H2A | 119.9 | C12—C11—S1 | 120.04 (9) |
| C2—C3—C4 | 119.01 (11) | C13—C12—C11 | 119.77 (11) |
| C2—C3—H3A | 120.5 | C13—C12—H12A | 120.1 |
| C4—C3—H3A | 120.5 | C11—C12—H12A | 120.1 |
| C5—C4—C3 | 122.27 (11) | C12—C13—C8 | 119.81 (10) |
| C5—C4—N3 | 118.65 (11) | C12—C13—H13A | 120.1 |
| C3—C4—N3 | 119.05 (11) | C8—C13—H13A | 120.1 |
| C4—C5—C6 | 119.17 (11) | ||
| O1—C1—C2—C3 | 177.73 (11) | C1—C6—C7—N1 | 1.12 (18) |
| C6—C1—C2—C3 | −1.66 (18) | C7—N1—C8—C9 | −178.76 (11) |
| C1—C2—C3—C4 | 0.62 (18) | C7—N1—C8—C13 | 1.41 (19) |
| C2—C3—C4—C5 | 0.68 (19) | C13—C8—C9—C10 | −0.02 (18) |
| C2—C3—C4—N3 | 178.64 (11) | N1—C8—C9—C10 | −179.86 (11) |
| O2—N3—C4—C5 | −175.78 (11) | C8—C9—C10—C11 | 0.06 (19) |
| O3—N3—C4—C5 | 4.36 (16) | C9—C10—C11—C12 | 0.21 (18) |
| O2—N3—C4—C3 | 6.19 (17) | C9—C10—C11—S1 | −179.82 (9) |
| O3—N3—C4—C3 | −173.67 (11) | O4—S1—C11—C10 | −128.97 (10) |
| C3—C4—C5—C6 | −0.92 (18) | O5—S1—C11—C10 | 0.07 (12) |
| N3—C4—C5—C6 | −178.88 (10) | N2—S1—C11—C10 | 115.18 (10) |
| C4—C5—C6—C1 | −0.13 (17) | O4—S1—C11—C12 | 51.00 (12) |
| C4—C5—C6—C7 | 179.03 (11) | O5—S1—C11—C12 | −179.95 (10) |
| O1—C1—C6—C5 | −177.97 (11) | N2—S1—C11—C12 | −64.84 (11) |
| C2—C1—C6—C5 | 1.41 (18) | C10—C11—C12—C13 | −0.51 (18) |
| O1—C1—C6—C7 | 2.88 (18) | S1—C11—C12—C13 | 179.51 (10) |
| C2—C1—C6—C7 | −177.74 (11) | C11—C12—C13—C8 | 0.55 (19) |
| C8—N1—C7—C6 | 179.21 (11) | C9—C8—C13—C12 | −0.29 (18) |
| C5—C6—C7—N1 | −178.02 (11) | N1—C8—C13—C12 | 179.54 (11) |
| H··· | ||||
| N2—H2N2···O5i | 0.82 (3) | 2.07 (3) | 2.891 (2) | 172 (3) |
| N2—H1N2···O2ii | 0.84 (3) | 2.58 (2) | 3.1378 (15) | 125 (2) |
| N2—H1N2···O4iii | 0.84 (3) | 2.11 (3) | 2.883 (2) | 153 (2) |
| O1—H1O1···N1 | 0.96 (3) | 1.67 (3) | 2.5626 (15) | 154 (4) |
| C5—H5A···O3iv | 0.93 | 2.55 | 3.3350 (17) | 143 |
| C7—H7A···O3iv | 0.93 | 2.36 | 3.187 (2) | 148 |
| C10—H10A···O1v | 0.93 | 2.58 | 3.1861 (19) | 123 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| N2—H2 | 0.82 (3) | 2.07 (3) | 2.891 (2) | 172 (3) |
| N2—H1 | 0.84 (3) | 2.58 (2) | 3.1378 (15) | 125 (2) |
| N2—H1 | 0.84 (3) | 2.11 (3) | 2.883 (2) | 153 (2) |
| O1—H1 | 0.96 (3) | 1.67 (3) | 2.5626 (15) | 154 (4) |
| C5—H5 | 0.93 | 2.55 | 3.3350 (17) | 143 |
| C7—H7 | 0.93 | 2.36 | 3.187 (2) | 148 |
| C10—H10 | 0.93 | 2.58 | 3.1861 (19) | 123 |
Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) .