Literature DB >> 21587563

rac-1-(Furan-2-ylmeth-yl)-N-nitro-5-(oxolan-2-ylmeth-yl)-1,3,5-triazinan-2-imine.

Chuan-Wen Sun1, Xu-Bo Ma, Hong-Fei Bu.   

Abstract

In the title compound C(13)H(19)N(5)O(4), which belongs to the insecticidally active neonicotinoid group of compounds, the triazane ring exhibits a half-chair conformation. The large discrepancy between the two nitro O-N-N bond angles [116.1 (2) and 123.98 (19)°] may be attributed to intra-molecular N-H⋯O hydrogen bonding involving one of the nitro O atoms as the acceptor. The delocalization of the electrons extends as far as the nitro group, forming coplanar π-electron networks. In the crystal, inversion dimers lined by pairs of N-H⋯O hydrogen bonds occur.

Entities:  

Year:  2010        PMID: 21587563      PMCID: PMC2983308          DOI: 10.1107/S1600536810036561

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background to neonicotinoids, see: Kagabu et al. (2005 ▶); Peter & Ralf (2008 ▶); Riley & Merz (2007 ▶); Tian et al. (2007 ▶); Tomizawa et al. (2000 ▶). For the synthesis, see: Zhu et al. (2010 ▶).

Experimental

Crystal data

C13H19N5O4 M = 309.33 Monoclinic, a = 11.1898 (12) Å b = 9.262 (1) Å c = 14.4863 (15) Å β = 99.276 (2)° V = 1481.7 (3) Å3 Z = 4 Mo Kα radiation μ = 0.11 mm−1 T = 298 K 0.16 × 0.12 × 0.10 mm

Data collection

Bruker SMART CCD area-detector diffractometer 9196 measured reflections 2902 independent reflections 2615 reflections with I > 2σ(I) R int = 0.054

Refinement

R[F 2 > 2σ(F 2)] = 0.066 wR(F 2) = 0.164 S = 1.18 2902 reflections 202 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.34 e Å−3 Δρmin = −0.21 e Å−3 Data collection: SMART (Bruker, 2001 ▶); cell refinement: SAINT (Bruker, 2001 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536810036561/zs2064sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810036561/zs2064Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C13H19N5O4F(000) = 656
Mr = 309.33Dx = 1.387 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 4051 reflections
a = 11.1898 (12) Åθ = 2.5–28.3°
b = 9.262 (1) ŵ = 0.11 mm1
c = 14.4863 (15) ÅT = 298 K
β = 99.276 (2)°Block, colorless
V = 1481.7 (3) Å30.16 × 0.12 × 0.10 mm
Z = 4
Bruker SMART CCD area-detector diffractometer2615 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.054
graphiteθmax = 26.0°, θmin = 2.1°
φ and ω scansh = −12→13
9196 measured reflectionsk = −9→11
2902 independent reflectionsl = −17→17
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.066Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.164H atoms treated by a mixture of independent and constrained refinement
S = 1.18w = 1/[σ2(Fo2) + (0.0599P)2 + 0.7103P] where P = (Fo2 + 2Fc2)/3
2902 reflections(Δ/σ)max < 0.001
202 parametersΔρmax = 0.34 e Å3
0 restraintsΔρmin = −0.21 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.1890 (2)1.0871 (3)−0.01634 (16)0.0487 (6)
H10.12621.0589−0.06840.058*
C20.2996 (3)1.1394 (3)−0.0536 (2)0.0696 (8)
H2A0.35681.0614−0.05610.084*
H2B0.27771.1802−0.11570.084*
C30.3511 (3)1.2516 (4)0.0146 (2)0.0736 (9)
H3A0.39241.3257−0.01560.088*
H3B0.40781.20940.06510.088*
C40.2436 (3)1.3124 (3)0.0502 (2)0.0615 (7)
H4A0.26301.33070.11690.074*
H4B0.21911.40270.01880.074*
C50.2134 (2)0.9639 (3)0.05245 (16)0.0473 (6)
H5A0.27920.99020.10170.057*
H5B0.14200.94680.08090.057*
C60.1429 (2)0.7399 (3)−0.02488 (15)0.0482 (6)
H6A0.16630.6655−0.06560.058*
H6B0.07910.7970−0.06080.058*
C70.16647 (19)0.6493 (2)0.13610 (15)0.0382 (5)
C80.3341 (2)0.7465 (3)0.06578 (16)0.0476 (6)
H8A0.40250.80740.09000.057*
H8B0.36300.67050.02900.057*
C90.3679 (2)0.6694 (3)0.23428 (16)0.0532 (6)
H9A0.32670.62170.27980.064*
H9B0.38990.76570.25740.064*
C100.4795 (2)0.5882 (3)0.22556 (16)0.0482 (6)
C110.5939 (2)0.6300 (3)0.23025 (18)0.0540 (6)
H110.62330.72340.24080.065*
C120.6623 (2)0.5070 (4)0.2163 (2)0.0693 (8)
H120.74540.50360.21610.083*
C130.5869 (3)0.3982 (4)0.2035 (3)0.0808 (10)
H130.60810.30340.19250.097*
N10.24528 (17)0.8309 (2)0.00685 (12)0.0440 (5)
N20.09726 (18)0.6721 (2)0.05406 (13)0.0434 (5)
H20.024 (2)0.659 (3)0.0503 (18)0.052*
N30.28447 (16)0.6810 (2)0.14521 (12)0.0442 (5)
N40.13154 (16)0.5958 (2)0.21520 (13)0.0463 (5)
N50.01557 (17)0.5609 (2)0.21385 (14)0.0486 (5)
O10.14841 (15)1.20885 (19)0.03162 (12)0.0540 (5)
O20.47092 (18)0.4451 (2)0.20884 (18)0.0799 (7)
O3−0.06477 (17)0.5800 (3)0.14598 (15)0.0902 (8)
O4−0.00984 (17)0.5099 (2)0.28658 (14)0.0709 (6)
U11U22U33U12U13U23
C10.0558 (14)0.0487 (14)0.0407 (12)−0.0013 (11)0.0050 (10)0.0002 (10)
C20.092 (2)0.0565 (17)0.0706 (18)−0.0087 (16)0.0424 (17)0.0028 (14)
C30.0628 (17)0.078 (2)0.084 (2)−0.0169 (16)0.0242 (16)−0.0094 (17)
C40.0651 (17)0.0516 (16)0.0669 (17)−0.0046 (13)0.0075 (13)−0.0092 (13)
C50.0543 (14)0.0514 (14)0.0384 (11)−0.0023 (11)0.0141 (10)0.0002 (10)
C60.0558 (14)0.0530 (14)0.0361 (11)0.0010 (11)0.0086 (10)−0.0008 (10)
C70.0385 (11)0.0360 (11)0.0409 (11)0.0031 (9)0.0088 (9)−0.0005 (9)
C80.0448 (12)0.0543 (14)0.0470 (12)0.0011 (11)0.0175 (10)0.0064 (11)
C90.0432 (13)0.0758 (18)0.0407 (12)−0.0032 (12)0.0072 (10)0.0061 (12)
C100.0418 (12)0.0613 (16)0.0393 (11)−0.0063 (11)0.0004 (9)0.0113 (11)
C110.0406 (12)0.0648 (16)0.0580 (14)−0.0129 (12)0.0121 (11)0.0088 (12)
C120.0416 (14)0.093 (2)0.0730 (18)0.0042 (15)0.0090 (13)0.0168 (17)
C130.0614 (18)0.069 (2)0.108 (3)0.0143 (17)0.0027 (17)0.0073 (19)
N10.0493 (11)0.0454 (11)0.0393 (9)0.0019 (9)0.0125 (8)0.0025 (8)
N20.0386 (10)0.0493 (12)0.0416 (10)−0.0025 (9)0.0046 (8)0.0033 (8)
N30.0370 (10)0.0562 (12)0.0403 (10)0.0008 (8)0.0091 (8)0.0102 (8)
N40.0369 (10)0.0568 (12)0.0465 (10)−0.0022 (9)0.0099 (8)0.0112 (9)
N50.0423 (11)0.0519 (12)0.0523 (12)−0.0010 (9)0.0101 (9)0.0095 (9)
O10.0495 (10)0.0493 (10)0.0636 (11)0.0033 (8)0.0104 (8)−0.0040 (8)
O20.0524 (12)0.0665 (14)0.1163 (19)−0.0084 (10)−0.0001 (11)0.0061 (12)
O30.0461 (11)0.154 (2)0.0675 (13)−0.0258 (13)0.0006 (10)0.0314 (14)
O40.0549 (11)0.0947 (16)0.0677 (12)−0.0047 (10)0.0235 (9)0.0345 (11)
C1—O11.436 (3)C7—N41.362 (3)
C1—C21.508 (4)C8—N11.433 (3)
C1—C51.510 (3)C8—N31.485 (3)
C1—H10.9800C8—H8A0.9700
C2—C31.485 (4)C8—H8B0.9700
C2—H2A0.9700C9—N31.469 (3)
C2—H2B0.9700C9—C101.481 (3)
C3—C41.494 (4)C9—H9A0.9700
C3—H3A0.9700C9—H9B0.9700
C3—H3B0.9700C10—C111.329 (3)
C4—O11.426 (3)C10—O21.348 (3)
C4—H4A0.9700C11—C121.405 (4)
C4—H4B0.9700C11—H110.9300
C5—N11.469 (3)C12—C131.309 (4)
C5—H5A0.9700C12—H120.9300
C5—H5B0.9700C13—O21.382 (4)
C6—N11.436 (3)C13—H130.9300
C6—N21.467 (3)N2—H20.82 (3)
C6—H6A0.9700N4—N51.335 (3)
C6—H6B0.9700N5—O41.229 (3)
C7—N21.327 (3)N5—O31.233 (3)
C7—N31.338 (3)
O1—C1—C2105.2 (2)N1—C8—N3111.98 (18)
O1—C1—C5108.15 (18)N1—C8—H8A109.2
C2—C1—C5114.1 (2)N3—C8—H8A109.2
O1—C1—H1109.7N1—C8—H8B109.2
C2—C1—H1109.7N3—C8—H8B109.2
C5—C1—H1109.7H8A—C8—H8B107.9
C3—C2—C1103.8 (2)N3—C9—C10112.8 (2)
C3—C2—H2A111.0N3—C9—H9A109.0
C1—C2—H2A111.0C10—C9—H9A109.0
C3—C2—H2B111.0N3—C9—H9B109.0
C1—C2—H2B111.0C10—C9—H9B109.0
H2A—C2—H2B109.0H9A—C9—H9B107.8
C2—C3—C4104.2 (2)C11—C10—O2109.6 (2)
C2—C3—H3A110.9C11—C10—C9131.8 (3)
C4—C3—H3A110.9O2—C10—C9118.6 (2)
C2—C3—H3B110.9C10—C11—C12107.4 (3)
C4—C3—H3B110.9C10—C11—H11126.3
H3A—C3—H3B108.9C12—C11—H11126.3
O1—C4—C3107.4 (2)C13—C12—C11106.9 (3)
O1—C4—H4A110.2C13—C12—H12126.6
C3—C4—H4A110.2C11—C12—H12126.6
O1—C4—H4B110.2C12—C13—O2109.9 (3)
C3—C4—H4B110.2C12—C13—H13125.1
H4A—C4—H4B108.5O2—C13—H13125.1
N1—C5—C1111.59 (18)C8—N1—C6108.15 (19)
N1—C5—H5A109.3C8—N1—C5112.63 (19)
C1—C5—H5A109.3C6—N1—C5113.40 (19)
N1—C5—H5B109.3C7—N2—C6122.69 (19)
C1—C5—H5B109.3C7—N2—H2117.9 (18)
H5A—C5—H5B108.0C6—N2—H2118.7 (18)
N1—C6—N2111.20 (18)C7—N3—C9123.22 (18)
N1—C6—H6A109.4C7—N3—C8119.94 (18)
N2—C6—H6A109.4C9—N3—C8116.49 (18)
N1—C6—H6B109.4N5—N4—C7119.09 (19)
N2—C6—H6B109.4O4—N5—O3119.9 (2)
H6A—C6—H6B108.0O4—N5—N4116.1 (2)
N2—C7—N3118.54 (19)O3—N5—N4123.98 (19)
N2—C7—N4127.3 (2)C4—O1—C1109.54 (19)
N3—C7—N4114.15 (19)C10—O2—C13106.2 (2)
O1—C1—C2—C329.5 (3)N1—C6—N2—C7−25.4 (3)
C5—C1—C2—C3−88.8 (3)N2—C7—N3—C9175.7 (2)
C1—C2—C3—C4−30.1 (3)N4—C7—N3—C9−4.3 (3)
C2—C3—C4—O120.2 (3)N2—C7—N3—C82.8 (3)
O1—C1—C5—N1175.01 (18)N4—C7—N3—C8−177.2 (2)
C2—C1—C5—N1−68.3 (3)C10—C9—N3—C7130.5 (2)
N3—C9—C10—C11110.1 (3)C10—C9—N3—C8−56.4 (3)
N3—C9—C10—O2−69.1 (3)N1—C8—N3—C728.7 (3)
O2—C10—C11—C12−0.3 (3)N1—C8—N3—C9−144.7 (2)
C9—C10—C11—C12−179.6 (2)N2—C7—N4—N5−0.1 (4)
C10—C11—C12—C130.3 (3)N3—C7—N4—N5179.9 (2)
C11—C12—C13—O2−0.2 (4)C7—N4—N5—O4178.3 (2)
N3—C8—N1—C6−56.5 (3)C7—N4—N5—O3−3.5 (4)
N3—C8—N1—C569.6 (2)C3—C4—O1—C1−1.6 (3)
N2—C6—N1—C854.5 (2)C2—C1—O1—C4−17.4 (3)
N2—C6—N1—C5−71.2 (2)C5—C1—O1—C4104.8 (2)
C1—C5—N1—C8144.4 (2)C11—C10—O2—C130.2 (3)
C1—C5—N1—C6−92.4 (2)C9—C10—O2—C13179.6 (2)
N3—C7—N2—C6−4.4 (3)C12—C13—O2—C100.0 (4)
N4—C7—N2—C6175.6 (2)
D—H···AD—HH···AD···AD—H···A
N2—H2···O30.82 (3)1.97 (3)2.563 (3)128 (2)
N2—H2···O1i0.82 (3)2.43 (3)3.035 (3)132 (2)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N2—H2⋯O30.82 (3)1.97 (3)2.563 (3)128 (2)
N2—H2⋯O1i0.82 (3)2.43 (3)3.035 (3)132 (2)

Symmetry code: (i) .

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