Literature DB >> 21587560

Piperazine-1,4-diium bis-(2-carb-oxy-1H-pyrazole-4-carboxyl-ate) tetra-hydrate.

Xin-Hui Zhou1.   

Abstract

The asymmetric unit of the title compound, C(4)H(12)N(2) (2+)·2C(5)pan class="Species">H(3)N(2)O(4) (-)·4H(2)O, comprises one-half of a piperazine-1,4-diium cation, which lies on an inversion centre, a 2-carb-oxy-1H-pyrazole-4-carboxyl-ate anion and two water mol-ecules. An extensive network of inter-molecular O-H⋯O, N-H⋯O, N-H⋯N and C-H⋯O hydrogen bonds between the cations, anions and water mol-ecules leads to a three-dimensional supra-molecular framework.

Entities:  

Year:  2010        PMID: 21587560      PMCID: PMC2983173          DOI: 10.1107/S160053681003655X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For 3,5-pyrazole­dicarb­oxy­lic acid, see: King et al. (2003 ▶); pan class="Gene">Pan et al. (2001 ▶). For reference structural data, see: Li & Su (2007 ▶); Reviriego et al. (2006 ▶).

Experimental

Crystal data

C4H12N2·2C5H3N2O4·4H2O M = 470.41 Monoclinic, a = 8.3363 (13) Å b = 16.246 (3) Å c = 7.3930 (11) Å β = 90.812 (3)° V = 1001.2 (3) Å3 Z = 2 Mo Kα radiation μ = 0.14 mm−1 T = 291 K 0.15 × 0.14 × 0.12 mm

Data collection

Bruker SMART APEX CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2000 ▶) T min = 0.980, T max = 0.984 5265 measured reflections 1946 independent reflections 1524 reflections with I > 2σ(I) R int = 0.051

Refinement

R[F 2 > 2σ(F 2)] = 0.059 wR(F 2) = 0.147 S = 1.10 1946 reflections 169 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.41 e Å−3 Δρmin = −0.23 e Å−3 Data collection: SMART (Bruker, 2000 ▶); cell refinement: SAINT (Bruker, 2000 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: DIAMOND (Brandenburg, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks I, global. DOI: 10.1107/S160053681003655X/om2361sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S160053681003655X/om2361Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C4H12N2·2C5H3N2O4·4H2OF(000) = 496
Mr = 470.41Dx = 1.560 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 1373 reflections
a = 8.3363 (13) Åθ = 2.7–24.0°
b = 16.246 (3) ŵ = 0.14 mm1
c = 7.3930 (11) ÅT = 291 K
β = 90.812 (3)°Block, white
V = 1001.2 (3) Å30.15 × 0.14 × 0.12 mm
Z = 2
Bruker SMART APEX CCD diffractometer1946 independent reflections
Radiation source: fine-focus sealed tube1524 reflections with I > 2σ(I)
graphiteRint = 0.051
phi and ω scansθmax = 26.0°, θmin = 2.4°
Absorption correction: multi-scan (SADABS; Bruker, 2000)h = −10→10
Tmin = 0.980, Tmax = 0.984k = −13→19
5265 measured reflectionsl = −8→9
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.059Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.147H atoms treated by a mixture of independent and constrained refinement
S = 1.10w = 1/[σ2(Fo2) + (0.0729P)2] where P = (Fo2 + 2Fc2)/3
1946 reflections(Δ/σ)max < 0.001
169 parametersΔρmax = 0.41 e Å3
0 restraintsΔρmin = −0.23 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C11.1506 (3)0.78226 (15)0.2962 (3)0.0267 (6)
C20.9861 (3)0.77149 (14)0.2216 (3)0.0233 (6)
C30.8727 (3)0.82885 (15)0.1741 (3)0.0256 (6)
H30.88270.88580.17850.031*
C40.7391 (3)0.78344 (14)0.1178 (3)0.0226 (5)
C50.5785 (3)0.81182 (15)0.0528 (3)0.0246 (6)
C60.6653 (4)0.51108 (17)−0.0379 (5)0.0455 (8)
H6A0.71490.49990.07900.055*
H6B0.74960.5242−0.12230.055*
C70.4237 (3)0.56416 (16)0.1024 (4)0.0380 (7)
H7A0.35090.61070.10700.046*
H7B0.46660.55480.22330.046*
N10.9196 (2)0.69726 (13)0.1933 (3)0.0266 (5)
H10.962 (3)0.6522 (18)0.220 (4)0.032*
N20.7696 (2)0.70254 (12)0.1296 (3)0.0262 (5)
N30.5556 (3)0.58226 (14)−0.0224 (3)0.0399 (7)
H3A0.604 (4)0.6268 (19)0.020 (4)0.048*
H3B0.514 (4)0.5944 (18)−0.130 (4)0.048*
O11.2097 (2)0.85001 (11)0.3144 (3)0.0454 (6)
O21.2193 (2)0.71272 (11)0.3390 (3)0.0360 (5)
H21.311 (4)0.7215 (17)0.394 (4)0.043*
O30.5431 (2)0.88609 (10)0.0779 (3)0.0360 (5)
O40.4901 (2)0.75870 (11)−0.0188 (3)0.0358 (5)
O50.0107 (3)0.53912 (14)0.2765 (4)0.0528 (7)
H5A−0.077 (5)0.510 (2)0.316 (5)0.063*
H5B0.093 (5)0.539 (2)0.346 (5)0.063*
O60.2621 (2)0.51492 (13)0.5325 (3)0.0476 (6)
H6C0.323 (4)0.472 (2)0.486 (5)0.057*
H6D0.320 (4)0.549 (2)0.556 (5)0.057*
U11U22U33U12U13U23
C10.0215 (13)0.0285 (14)0.0299 (15)0.0002 (11)−0.0059 (11)0.0006 (11)
C20.0199 (12)0.0226 (13)0.0272 (14)−0.0006 (10)−0.0039 (10)0.0002 (10)
C30.0205 (13)0.0193 (12)0.0369 (15)−0.0020 (9)−0.0056 (10)−0.0016 (10)
C40.0189 (12)0.0203 (12)0.0286 (14)0.0011 (10)−0.0045 (10)−0.0004 (10)
C50.0159 (12)0.0228 (13)0.0351 (15)−0.0025 (10)−0.0040 (10)0.0030 (11)
C60.0399 (17)0.0443 (18)0.052 (2)−0.0078 (14)0.0024 (14)−0.0050 (15)
C70.0455 (17)0.0286 (15)0.0398 (17)0.0027 (12)−0.0021 (14)−0.0035 (12)
N10.0191 (11)0.0186 (11)0.0417 (14)0.0025 (9)−0.0092 (9)0.0022 (9)
N20.0169 (10)0.0215 (11)0.0398 (13)−0.0001 (8)−0.0103 (9)0.0011 (9)
N30.0616 (17)0.0210 (12)0.0370 (15)−0.0144 (11)−0.0069 (12)−0.0007 (10)
O10.0326 (11)0.0284 (11)0.0745 (16)−0.0083 (8)−0.0248 (10)0.0010 (10)
O20.0195 (9)0.0284 (10)0.0597 (14)−0.0004 (8)−0.0183 (9)0.0030 (9)
O30.0239 (10)0.0218 (10)0.0622 (14)0.0044 (8)−0.0093 (9)−0.0002 (9)
O40.0221 (9)0.0282 (10)0.0566 (13)−0.0002 (8)−0.0167 (9)−0.0048 (9)
O50.0395 (12)0.0361 (12)0.0826 (19)0.0042 (10)−0.0040 (12)0.0144 (11)
O60.0345 (12)0.0334 (12)0.0748 (17)−0.0035 (9)−0.0015 (11)−0.0107 (11)
C1—O11.213 (3)C6—H6B0.9700
C1—O21.304 (3)C7—N31.476 (4)
C1—C21.481 (3)C7—C6i1.504 (4)
C2—N11.342 (3)C7—H7A0.9700
C2—C31.369 (3)C7—H7B0.9700
C3—C41.395 (3)N1—N21.333 (3)
C3—H30.9300N1—H10.84 (3)
C4—N21.341 (3)N3—H3A0.88 (3)
C4—C51.489 (3)N3—H3B0.88 (3)
C5—O41.248 (3)O2—H20.87 (3)
C5—O31.256 (3)O5—H5A0.92 (4)
C6—N31.480 (4)O5—H5B0.85 (4)
C6—C7i1.504 (4)O6—H6C0.93 (3)
C6—H6A0.9700O6—H6D0.76 (3)
O1—C1—O2125.7 (2)H6A—C6—H6B108.0
O1—C1—C2121.4 (2)N3—C7—C6i109.4 (2)
O2—C1—C2112.9 (2)N3—C7—H7A109.8
N1—C2—C3106.9 (2)C6i—C7—H7A109.8
N1—C2—C1122.8 (2)N3—C7—H7B109.8
C3—C2—C1130.3 (2)C6i—C7—H7B109.8
C2—C3—C4105.2 (2)H7A—C7—H7B108.2
C2—C3—H3127.4N2—N1—C2112.3 (2)
C4—C3—H3127.4N2—N1—H1122.4 (18)
N2—C4—C3110.4 (2)C2—N1—H1125.1 (19)
N2—C4—C5119.6 (2)N1—N2—C4105.21 (19)
C3—C4—C5130.0 (2)C7—N3—C6111.1 (2)
O4—C5—O3126.1 (2)C7—N3—H3A106 (2)
O4—C5—C4116.5 (2)C6—N3—H3A113 (2)
O3—C5—C4117.5 (2)C7—N3—H3B108 (2)
N3—C6—C7i111.0 (2)C6—N3—H3B110 (2)
N3—C6—H6A109.4H3A—N3—H3B108 (3)
C7i—C6—H6A109.4C1—O2—H2110.5 (18)
N3—C6—H6B109.4H5A—O5—H5B117 (3)
C7i—C6—H6B109.4H6C—O6—H6D107 (3)
D—H···AD—HH···AD···AD—H···A
N1—H1···O5ii0.84 (3)1.93 (3)2.746 (3)167 (3)
O2—H2···O4iii0.87 (3)1.65 (3)2.520 (2)175 (3)
N3—H3A···O40.88 (3)2.36 (3)2.918 (3)121 (2)
N3—H3A···N20.88 (3)2.01 (3)2.865 (3)162 (3)
N3—H3B···O3iv0.88 (3)2.20 (3)2.999 (3)150 (3)
O5—H5B···O60.85 (4)2.00 (4)2.831 (3)166 (3)
O5—H5A···O6v0.92 (4)1.96 (4)2.833 (3)157 (3)
O6—H6C···O3vi0.93 (3)1.85 (3)2.779 (3)173 (3)
O6—H6D···O3vii0.76 (3)2.14 (3)2.858 (3)158 (4)
C6—H6B···O5i0.972.533.348 (4)142
C7—H7A···O1viii0.972.533.091 (3)117
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1⋯O5i0.84 (3)1.93 (3)2.746 (3)167 (3)
O2—H2⋯O4ii0.87 (3)1.65 (3)2.520 (2)175 (3)
N3—H3A⋯O40.88 (3)2.36 (3)2.918 (3)121 (2)
N3—H3A⋯N20.88 (3)2.01 (3)2.865 (3)162 (3)
N3—H3B⋯O3iii0.88 (3)2.20 (3)2.999 (3)150 (3)
O5—H5B⋯O60.85 (4)2.00 (4)2.831 (3)166 (3)
O5—H5A⋯O6iv0.92 (4)1.96 (4)2.833 (3)157 (3)
O6—H6C⋯O3v0.93 (3)1.85 (3)2.779 (3)173 (3)
O6—H6D⋯O3vi0.76 (3)2.14 (3)2.858 (3)158 (4)
C6—H6B⋯O5vii0.972.533.348 (4)142
C7—H7A⋯O1viii0.972.533.091 (3)117

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) ; (vi) ; (vii) ; (viii) .

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