| Literature DB >> 21587560 |
Abstract
The asymmetric unit of the title compound, C(4)H(12)N(2) (2+)·2C(5)Entities:
Year: 2010 PMID: 21587560 PMCID: PMC2983173 DOI: 10.1107/S160053681003655X
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C4H12N2·2C5H3N2O4·4H2O | |
| Monoclinic, | Mo |
| Hall symbol: -P 2ybc | Cell parameters from 1373 reflections |
| θ = 2.7–24.0° | |
| µ = 0.14 mm−1 | |
| β = 90.812 (3)° | Block, white |
| 0.15 × 0.14 × 0.12 mm | |
| Bruker SMART APEX CCD diffractometer | 1946 independent reflections |
| Radiation source: fine-focus sealed tube | 1524 reflections with |
| graphite | |
| phi and ω scans | θmax = 26.0°, θmin = 2.4° |
| Absorption correction: multi-scan ( | |
| 5265 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 1946 reflections | (Δ/σ)max < 0.001 |
| 169 parameters | Δρmax = 0.41 e Å−3 |
| 0 restraints | Δρmin = −0.23 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| C1 | 1.1506 (3) | 0.78226 (15) | 0.2962 (3) | 0.0267 (6) | |
| C2 | 0.9861 (3) | 0.77149 (14) | 0.2216 (3) | 0.0233 (6) | |
| C3 | 0.8727 (3) | 0.82885 (15) | 0.1741 (3) | 0.0256 (6) | |
| H3 | 0.8827 | 0.8858 | 0.1785 | 0.031* | |
| C4 | 0.7391 (3) | 0.78344 (14) | 0.1178 (3) | 0.0226 (5) | |
| C5 | 0.5785 (3) | 0.81182 (15) | 0.0528 (3) | 0.0246 (6) | |
| C6 | 0.6653 (4) | 0.51108 (17) | −0.0379 (5) | 0.0455 (8) | |
| H6A | 0.7149 | 0.4999 | 0.0790 | 0.055* | |
| H6B | 0.7496 | 0.5242 | −0.1223 | 0.055* | |
| C7 | 0.4237 (3) | 0.56416 (16) | 0.1024 (4) | 0.0380 (7) | |
| H7A | 0.3509 | 0.6107 | 0.1070 | 0.046* | |
| H7B | 0.4666 | 0.5548 | 0.2233 | 0.046* | |
| N1 | 0.9196 (2) | 0.69726 (13) | 0.1933 (3) | 0.0266 (5) | |
| H1 | 0.962 (3) | 0.6522 (18) | 0.220 (4) | 0.032* | |
| N2 | 0.7696 (2) | 0.70254 (12) | 0.1296 (3) | 0.0262 (5) | |
| N3 | 0.5556 (3) | 0.58226 (14) | −0.0224 (3) | 0.0399 (7) | |
| H3A | 0.604 (4) | 0.6268 (19) | 0.020 (4) | 0.048* | |
| H3B | 0.514 (4) | 0.5944 (18) | −0.130 (4) | 0.048* | |
| O1 | 1.2097 (2) | 0.85001 (11) | 0.3144 (3) | 0.0454 (6) | |
| O2 | 1.2193 (2) | 0.71272 (11) | 0.3390 (3) | 0.0360 (5) | |
| H2 | 1.311 (4) | 0.7215 (17) | 0.394 (4) | 0.043* | |
| O3 | 0.5431 (2) | 0.88609 (10) | 0.0779 (3) | 0.0360 (5) | |
| O4 | 0.4901 (2) | 0.75870 (11) | −0.0188 (3) | 0.0358 (5) | |
| O5 | 0.0107 (3) | 0.53912 (14) | 0.2765 (4) | 0.0528 (7) | |
| H5A | −0.077 (5) | 0.510 (2) | 0.316 (5) | 0.063* | |
| H5B | 0.093 (5) | 0.539 (2) | 0.346 (5) | 0.063* | |
| O6 | 0.2621 (2) | 0.51492 (13) | 0.5325 (3) | 0.0476 (6) | |
| H6C | 0.323 (4) | 0.472 (2) | 0.486 (5) | 0.057* | |
| H6D | 0.320 (4) | 0.549 (2) | 0.556 (5) | 0.057* |
| C1 | 0.0215 (13) | 0.0285 (14) | 0.0299 (15) | 0.0002 (11) | −0.0059 (11) | 0.0006 (11) |
| C2 | 0.0199 (12) | 0.0226 (13) | 0.0272 (14) | −0.0006 (10) | −0.0039 (10) | 0.0002 (10) |
| C3 | 0.0205 (13) | 0.0193 (12) | 0.0369 (15) | −0.0020 (9) | −0.0056 (10) | −0.0016 (10) |
| C4 | 0.0189 (12) | 0.0203 (12) | 0.0286 (14) | 0.0011 (10) | −0.0045 (10) | −0.0004 (10) |
| C5 | 0.0159 (12) | 0.0228 (13) | 0.0351 (15) | −0.0025 (10) | −0.0040 (10) | 0.0030 (11) |
| C6 | 0.0399 (17) | 0.0443 (18) | 0.052 (2) | −0.0078 (14) | 0.0024 (14) | −0.0050 (15) |
| C7 | 0.0455 (17) | 0.0286 (15) | 0.0398 (17) | 0.0027 (12) | −0.0021 (14) | −0.0035 (12) |
| N1 | 0.0191 (11) | 0.0186 (11) | 0.0417 (14) | 0.0025 (9) | −0.0092 (9) | 0.0022 (9) |
| N2 | 0.0169 (10) | 0.0215 (11) | 0.0398 (13) | −0.0001 (8) | −0.0103 (9) | 0.0011 (9) |
| N3 | 0.0616 (17) | 0.0210 (12) | 0.0370 (15) | −0.0144 (11) | −0.0069 (12) | −0.0007 (10) |
| O1 | 0.0326 (11) | 0.0284 (11) | 0.0745 (16) | −0.0083 (8) | −0.0248 (10) | 0.0010 (10) |
| O2 | 0.0195 (9) | 0.0284 (10) | 0.0597 (14) | −0.0004 (8) | −0.0183 (9) | 0.0030 (9) |
| O3 | 0.0239 (10) | 0.0218 (10) | 0.0622 (14) | 0.0044 (8) | −0.0093 (9) | −0.0002 (9) |
| O4 | 0.0221 (9) | 0.0282 (10) | 0.0566 (13) | −0.0002 (8) | −0.0167 (9) | −0.0048 (9) |
| O5 | 0.0395 (12) | 0.0361 (12) | 0.0826 (19) | 0.0042 (10) | −0.0040 (12) | 0.0144 (11) |
| O6 | 0.0345 (12) | 0.0334 (12) | 0.0748 (17) | −0.0035 (9) | −0.0015 (11) | −0.0107 (11) |
| C1—O1 | 1.213 (3) | C6—H6B | 0.9700 |
| C1—O2 | 1.304 (3) | C7—N3 | 1.476 (4) |
| C1—C2 | 1.481 (3) | C7—C6i | 1.504 (4) |
| C2—N1 | 1.342 (3) | C7—H7A | 0.9700 |
| C2—C3 | 1.369 (3) | C7—H7B | 0.9700 |
| C3—C4 | 1.395 (3) | N1—N2 | 1.333 (3) |
| C3—H3 | 0.9300 | N1—H1 | 0.84 (3) |
| C4—N2 | 1.341 (3) | N3—H3A | 0.88 (3) |
| C4—C5 | 1.489 (3) | N3—H3B | 0.88 (3) |
| C5—O4 | 1.248 (3) | O2—H2 | 0.87 (3) |
| C5—O3 | 1.256 (3) | O5—H5A | 0.92 (4) |
| C6—N3 | 1.480 (4) | O5—H5B | 0.85 (4) |
| C6—C7i | 1.504 (4) | O6—H6C | 0.93 (3) |
| C6—H6A | 0.9700 | O6—H6D | 0.76 (3) |
| O1—C1—O2 | 125.7 (2) | H6A—C6—H6B | 108.0 |
| O1—C1—C2 | 121.4 (2) | N3—C7—C6i | 109.4 (2) |
| O2—C1—C2 | 112.9 (2) | N3—C7—H7A | 109.8 |
| N1—C2—C3 | 106.9 (2) | C6i—C7—H7A | 109.8 |
| N1—C2—C1 | 122.8 (2) | N3—C7—H7B | 109.8 |
| C3—C2—C1 | 130.3 (2) | C6i—C7—H7B | 109.8 |
| C2—C3—C4 | 105.2 (2) | H7A—C7—H7B | 108.2 |
| C2—C3—H3 | 127.4 | N2—N1—C2 | 112.3 (2) |
| C4—C3—H3 | 127.4 | N2—N1—H1 | 122.4 (18) |
| N2—C4—C3 | 110.4 (2) | C2—N1—H1 | 125.1 (19) |
| N2—C4—C5 | 119.6 (2) | N1—N2—C4 | 105.21 (19) |
| C3—C4—C5 | 130.0 (2) | C7—N3—C6 | 111.1 (2) |
| O4—C5—O3 | 126.1 (2) | C7—N3—H3A | 106 (2) |
| O4—C5—C4 | 116.5 (2) | C6—N3—H3A | 113 (2) |
| O3—C5—C4 | 117.5 (2) | C7—N3—H3B | 108 (2) |
| N3—C6—C7i | 111.0 (2) | C6—N3—H3B | 110 (2) |
| N3—C6—H6A | 109.4 | H3A—N3—H3B | 108 (3) |
| C7i—C6—H6A | 109.4 | C1—O2—H2 | 110.5 (18) |
| N3—C6—H6B | 109.4 | H5A—O5—H5B | 117 (3) |
| C7i—C6—H6B | 109.4 | H6C—O6—H6D | 107 (3) |
| H··· | ||||
| N1—H1···O5ii | 0.84 (3) | 1.93 (3) | 2.746 (3) | 167 (3) |
| O2—H2···O4iii | 0.87 (3) | 1.65 (3) | 2.520 (2) | 175 (3) |
| N3—H3A···O4 | 0.88 (3) | 2.36 (3) | 2.918 (3) | 121 (2) |
| N3—H3A···N2 | 0.88 (3) | 2.01 (3) | 2.865 (3) | 162 (3) |
| N3—H3B···O3iv | 0.88 (3) | 2.20 (3) | 2.999 (3) | 150 (3) |
| O5—H5B···O6 | 0.85 (4) | 2.00 (4) | 2.831 (3) | 166 (3) |
| O5—H5A···O6v | 0.92 (4) | 1.96 (4) | 2.833 (3) | 157 (3) |
| O6—H6C···O3vi | 0.93 (3) | 1.85 (3) | 2.779 (3) | 173 (3) |
| O6—H6D···O3vii | 0.76 (3) | 2.14 (3) | 2.858 (3) | 158 (4) |
| C6—H6B···O5i | 0.97 | 2.53 | 3.348 (4) | 142 |
| C7—H7A···O1viii | 0.97 | 2.53 | 3.091 (3) | 117 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| N1—H1⋯O5i | 0.84 (3) | 1.93 (3) | 2.746 (3) | 167 (3) |
| O2—H2⋯O4ii | 0.87 (3) | 1.65 (3) | 2.520 (2) | 175 (3) |
| N3—H3 | 0.88 (3) | 2.36 (3) | 2.918 (3) | 121 (2) |
| N3—H3 | 0.88 (3) | 2.01 (3) | 2.865 (3) | 162 (3) |
| N3—H3 | 0.88 (3) | 2.20 (3) | 2.999 (3) | 150 (3) |
| O5—H5 | 0.85 (4) | 2.00 (4) | 2.831 (3) | 166 (3) |
| O5—H5 | 0.92 (4) | 1.96 (4) | 2.833 (3) | 157 (3) |
| O6—H6 | 0.93 (3) | 1.85 (3) | 2.779 (3) | 173 (3) |
| O6—H6 | 0.76 (3) | 2.14 (3) | 2.858 (3) | 158 (4) |
| C6—H6 | 0.97 | 2.53 | 3.348 (4) | 142 |
| C7—H7 | 0.97 | 2.53 | 3.091 (3) | 117 |
Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) ; (vi) ; (vii) ; (viii) .