Literature DB >> 21587559

4-Oxocyclo-hexa-neacetic acid: catemeric hydrogen bonding and spontaneous resolution of a single conformational enanti-omer in an achiral ∊-keto acid.

Alan Barcon1, Andrew P J Brunskill, Roger A Lalancette, Hugh W Thompson.   

Abstract

The asymmetric unit of the title compound, C(8)H(12)O(3), consists of a single conformational enanti-omer, which aggregates in the n class="Chemical">catemeric acid-to-ketone hydrogen-bonding mode [O⋯O = 2.682 (4) Å and O-H⋯O = 172 (6)°]. Four hydrogen-bonding chains of translationally related mol-ecules pass through the cell orthogonal to the 4(3) screw axis along c, alternating in the 110 and the 10 direction, with alignment with respect to this axis of + + - -. Successive chains are rotated by 90° around the c axis. One C-H⋯O=C close contact, involving the carboxyl group, exists.

Entities:  

Year:  2010        PMID: 21587559      PMCID: PMC2983244          DOI: 10.1107/S1600536810036652

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For a discussion of highly ordered carboxyl bond distances and angles, see: Borthwick (1980 ▶). For close contact information, see: Steiner (1997 ▶). For related structures, see: Abell et al. (1991 ▶); Chen et al. (2000 ▶); Desiraju (1989 ▶); Halfpenny (1990 ▶); Jacques et al. (1981 ▶); Kawai et al. (1985 ▶); McGuire et al. (1995 ▶). For background information regarding the crystallization of a single chiral conformer from a racemic solution, see: Kondepudi et al. (1990 ▶). For anti-n class="Chemical">isoketopinic acid, see: Lalancette et al. (1997 ▶). For a description of the Cambridge Structural Database, see: Allen (2002 ▶).

Experimental

Crystal data

C8H12O3 M = 156.18 Tetragonal, a = 6.8531 (12) Å c = 17.372 (3) Å V = 815.9 (3) Å3 Z = 4 Cu Kα radiation μ = 0.80 mm−1 T = 100 K 0.28 × 0.20 × 0.16 mm

Data collection

Bruker SMART APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 2008a ▶) T min = 0.806, T max = 0.882 6963 measured reflections 1310 independent reflections 1274 reflections with I > 2σ(I) R int = 0.029

Refinement

R[F 2 > 2σ(F 2)] = 0.039 wR(F 2) = 0.113 S = 1.18 1310 reflections 105 parameters 1 restraint H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.17 e Å−3 Δρmin = −0.20 e Å−3 Absolute structure: Flack (1983 ▶), 559 Friedel pairs Flack parameter: 0.0 (4) Data collection: APEX2 (Bruker, 2006 ▶); cell refinement: SAINT (Bruker, 2005 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008b ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536810036652/sj5037sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810036652/sj5037Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C8H12O3Dx = 1.271 Mg m3
Mr = 156.18Melting point: 345 K
Tetragonal, P43Cu Kα radiation, λ = 1.54178 Å
Hall symbol: P 4cwCell parameters from 6759 reflections
a = 6.8531 (12) Åθ = 5.1–70.5°
c = 17.372 (3) ŵ = 0.80 mm1
V = 815.9 (3) Å3T = 100 K
Z = 4Block, colourless
F(000) = 3360.28 × 0.20 × 0.16 mm
Bruker SMART APEXII CCD area-detector diffractometer1310 independent reflections
Radiation source: fine-focus sealed tube1274 reflections with I > 2σ(I)
graphiteRint = 0.029
φ and ω scansθmax = 70.8°, θmin = 6.5°
Absorption correction: multi-scan (SADABS; Sheldrick, 2008a)h = −7→7
Tmin = 0.806, Tmax = 0.882k = −8→7
6963 measured reflectionsl = −20→18
Refinement on F2Hydrogen site location: inferred from neighbouring sites
Least-squares matrix: fullH atoms treated by a mixture of independent and constrained refinement
R[F2 > 2σ(F2)] = 0.039w = 1/[σ2(Fo2) + (0.0369P)2 + 0.671P] where P = (Fo2 + 2Fc2)/3
wR(F2) = 0.113(Δ/σ)max < 0.001
S = 1.18Δρmax = 0.17 e Å3
1310 reflectionsΔρmin = −0.20 e Å3
105 parametersExtinction correction: SHELXTL (Sheldrick, 2008b), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
1 restraintExtinction coefficient: 0.0023 (5)
Primary atom site location: structure-invariant direct methodsAbsolute structure: Flack (1983), 559 Friedel pairs
Secondary atom site location: difference Fourier mapFlack parameter: 0.0 (4)
Experimental. crystal mounted on a Cryoloop using Paratone-N
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.9958 (3)1.2372 (3)0.08526 (13)0.0341 (5)
O20.2472 (4)0.6544 (3)0.03744 (14)0.0460 (6)
O30.1245 (4)0.5683 (4)0.15016 (13)0.0421 (6)
H30.083 (6)0.482 (6)0.130 (2)0.036 (11)*
C10.4571 (4)0.9768 (4)0.10334 (18)0.0275 (6)
H10.39561.01550.05340.033*
C20.6441 (4)0.8617 (4)0.08592 (17)0.0289 (7)
H2A0.70560.82080.13490.035*
H2B0.61050.74260.05650.035*
C30.7890 (4)0.9841 (4)0.03955 (19)0.0299 (6)
H3A0.91280.91090.03420.036*
H3B0.73581.0064−0.01270.036*
C40.8297 (4)1.1764 (4)0.07670 (18)0.0294 (7)
C50.6532 (5)1.2912 (4)0.10375 (19)0.0340 (7)
H5A0.58671.34940.05870.041*
H5B0.69671.39900.13760.041*
C60.5086 (4)1.1616 (4)0.14778 (18)0.0309 (7)
H6A0.56621.12490.19800.037*
H6B0.38791.23650.15800.037*
C70.3105 (4)0.8534 (4)0.14873 (17)0.0284 (6)
H7A0.37570.80310.19560.034*
H7B0.20190.93860.16560.034*
C80.2272 (4)0.6841 (4)0.10499 (17)0.0285 (7)
U11U22U33U12U13U23
O10.0344 (12)0.0356 (12)0.0322 (12)−0.0107 (9)−0.0004 (9)0.0009 (9)
O20.0644 (16)0.0488 (14)0.0248 (12)−0.0289 (12)0.0023 (12)−0.0052 (10)
O30.0544 (15)0.0413 (14)0.0305 (12)−0.0195 (12)0.0077 (11)−0.0039 (11)
C10.0327 (15)0.0281 (15)0.0217 (14)−0.0034 (12)−0.0037 (12)0.0028 (12)
C20.0366 (16)0.0244 (15)0.0258 (16)−0.0003 (12)−0.0009 (13)−0.0002 (12)
C30.0321 (16)0.0318 (15)0.0257 (15)0.0002 (12)−0.0033 (13)0.0002 (13)
C40.0353 (16)0.0308 (15)0.0222 (14)−0.0054 (13)−0.0014 (13)0.0070 (12)
C50.0407 (18)0.0254 (16)0.0358 (18)−0.0041 (13)−0.0004 (14)−0.0018 (13)
C60.0282 (15)0.0294 (16)0.0352 (17)0.0007 (11)−0.0004 (13)−0.0025 (14)
C70.0311 (15)0.0299 (15)0.0244 (15)−0.0004 (11)−0.0004 (12)0.0015 (12)
C80.0270 (15)0.0351 (16)0.0234 (16)0.0001 (12)−0.0016 (12)0.0002 (12)
O1—C41.222 (4)C3—H3A0.9900
O2—C81.199 (4)C3—H3B0.9900
O3—C81.319 (4)C4—C51.518 (4)
O3—H30.74 (4)C5—C61.535 (4)
C1—C61.524 (4)C5—H5A0.9900
C1—C71.532 (4)C5—H5B0.9900
C1—C21.535 (4)C6—H6A0.9900
C1—H11.0000C6—H6B0.9900
C2—C31.529 (4)C7—C81.500 (4)
C2—H2A0.9900C7—H7A0.9900
C2—H2B0.9900C7—H7B0.9900
C3—C41.494 (4)
C8—O3—H3114 (3)C4—C5—C6111.6 (2)
C6—C1—C7110.5 (2)C4—C5—H5A109.3
C6—C1—C2109.5 (2)C6—C5—H5A109.3
C7—C1—C2111.4 (2)C4—C5—H5B109.3
C6—C1—H1108.5C6—C5—H5B109.3
C7—C1—H1108.5H5A—C5—H5B108.0
C2—C1—H1108.5C1—C6—C5112.2 (2)
C3—C2—C1111.4 (2)C1—C6—H6A109.2
C3—C2—H2A109.4C5—C6—H6A109.2
C1—C2—H2A109.4C1—C6—H6B109.2
C3—C2—H2B109.4C5—C6—H6B109.2
C1—C2—H2B109.4H6A—C6—H6B107.9
H2A—C2—H2B108.0C8—C7—C1114.6 (2)
C4—C3—C2112.2 (3)C8—C7—H7A108.6
C4—C3—H3A109.2C1—C7—H7A108.6
C2—C3—H3A109.2C8—C7—H7B108.6
C4—C3—H3B109.2C1—C7—H7B108.6
C2—C3—H3B109.2H7A—C7—H7B107.6
H3A—C3—H3B107.9O2—C8—O3122.8 (3)
O1—C4—C3121.8 (3)O2—C8—C7125.7 (3)
O1—C4—C5121.9 (3)O3—C8—C7111.5 (3)
C3—C4—C5116.3 (3)
C6—C1—C2—C3−58.4 (3)C7—C1—C6—C5−179.2 (2)
C7—C1—C2—C3179.1 (2)C2—C1—C6—C557.8 (3)
C1—C2—C3—C452.9 (3)C4—C5—C6—C1−51.0 (3)
C2—C3—C4—O1132.3 (3)C6—C1—C7—C8171.1 (2)
C2—C3—C4—C5−47.3 (4)C2—C1—C7—C8−67.0 (3)
O1—C4—C5—C6−133.5 (3)C1—C7—C8—O2−9.6 (4)
C3—C4—C5—C646.0 (4)C1—C7—C8—O3171.0 (3)
D—H···AD—HH···AD···AD—H···A
O3—H3···O1i0.75 (6)1.94 (6)2.682 (4)172 (6)
C7—H7A···O2ii0.992.513.439 (5)156
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O3—H3⋯O1i0.75 (6)1.94 (6)2.682 (4)172 (6)
C7—H7A⋯O2ii0.992.513.439 (5)156

Symmetry codes: (i) ; (ii) .

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