Literature DB >> 21587537

N-[(2-Chloro-3-quinol-yl)meth-yl]-4-fluoro-aniline.

Jerry P Jasinski, Albert E Pek, C S Chidan Kumar, H S Yathirajan, Suresh Kumar.   

Abstract

In the title compound, C(16)H(12)ClFN(2), the dihedral angle between the quinoline ring system and the flourophenyl ring is 86.70 (4)°. In the crystal, mol-ecules are linked into chains along the a axis by N-H⋯N hydrogen bonds. In addition, C-H⋯π inter-actions involving the two benzene rings are observed.

Entities:  

Year:  2010        PMID: 21587537      PMCID: PMC2983417          DOI: 10.1107/S1600536810036056

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background, properties and the biological activity of quinolines, see: Campbell et al. (1988 ▶); Dutta et al. (2002 ▶); Markees et al. (1970 ▶); Meth-Cohn et al. (1981 ▶); Michael et al. (1997 ▶); Morimoto et al. (1991 ▶); Padwa et al. (1999 ▶); Rajendran & Karavembu (2002 ▶); Robert & Meunier et al. (1998 ▶). For the synthesis of quinolines, see: Kouznetsov et al. (2005 ▶). For related structures, see: Butcher et al. 2007 ▶); Lynch et al. (2001 ▶); Subashini et al. (2009 ▶); Yathirajan et al. (2007 ▶); Wu et al. (2009 ▶); Khan et al. (2010 ▶). For bond-length data, see: Allen et al. (1987 ▶) .

Experimental

Crystal data

C16H12ClFN2 M = 286.73 Triclinic, a = 7.3661 (8) Å b = 8.8967 (9) Å c = 11.5129 (12) Å α = 68.704 (1)° β = 74.468 (1)° γ = 75.445 (1)° V = 667.25 (12) Å3 Z = 2 Mo Kα radiation μ = 0.29 mm−1 T = 100 K 0.55 × 0.50 × 0.25 mm

Data collection

Bruker APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2008 ▶) T min = 0.858, T max = 0.932 8162 measured reflections 3930 independent reflections 3633 reflections with I > 2σ(I) R int = 0.014

Refinement

R[F 2 > 2σ(F 2)] = 0.034 wR(F 2) = 0.094 S = 1.03 3930 reflections 181 parameters H-atom parameters constrained Δρmax = 0.49 e Å−3 Δρmin = −0.30 e Å−3 Data collection: APEX2 (Bruker, 2008 ▶); cell refinement: SAINT (Bruker, 2008 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810036056/ci5158sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810036056/ci5158Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C16H12ClFN2Z = 2
Mr = 286.73F(000) = 296
Triclinic, P1Dx = 1.427 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 7.3661 (8) ÅCell parameters from 5222 reflections
b = 8.8967 (9) Åθ = 2.5–31.0°
c = 11.5129 (12) ŵ = 0.29 mm1
α = 68.704 (1)°T = 100 K
β = 74.468 (1)°Plate, colourless
γ = 75.445 (1)°0.55 × 0.50 × 0.25 mm
V = 667.25 (12) Å3
Bruker APEXII CCD area-detector diffractometer3930 independent reflections
Radiation source: fine-focus sealed tube3633 reflections with I > 2σ(I)
graphiteRint = 0.014
ω scansθmax = 31.4°, θmin = 1.9°
Absorption correction: multi-scan (SADABS; Bruker, 2008)h = −10→10
Tmin = 0.858, Tmax = 0.932k = −12→12
8162 measured reflectionsl = −16→16
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.034Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.094H-atom parameters constrained
S = 1.03w = 1/[σ2(Fo2) + (0.0533P)2 + 0.2404P] where P = (Fo2 + 2Fc2)/3
3930 reflections(Δ/σ)max = 0.001
181 parametersΔρmax = 0.49 e Å3
0 restraintsΔρmin = −0.30 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cl11.15120 (4)−0.21591 (3)0.79554 (2)0.02245 (8)
N11.24567 (12)0.03932 (10)0.60973 (8)0.01634 (16)
N20.55793 (12)0.03799 (11)0.74940 (8)0.01744 (17)
H180.49050.02910.70250.021*
F10.24347 (10)0.46529 (9)1.02706 (7)0.02663 (16)
C71.09918 (14)−0.03020 (11)0.67819 (9)0.01494 (17)
C11.02460 (14)0.25805 (11)0.49326 (9)0.01455 (17)
C100.74539 (14)−0.05999 (12)0.75411 (9)0.01625 (18)
H10A0.7513−0.15570.73080.020*
H10B0.7657−0.09770.84070.020*
C80.90473 (13)0.03112 (11)0.66692 (9)0.01406 (17)
C51.36831 (15)0.26375 (13)0.44050 (10)0.01949 (19)
H51.49130.21650.45520.023*
C61.21153 (14)0.18553 (12)0.51570 (9)0.01520 (17)
C90.87191 (13)0.17731 (12)0.57294 (9)0.01522 (17)
H90.74740.22400.56150.018*
C140.21346 (15)0.33659 (13)0.88812 (10)0.0206 (2)
H140.08790.39100.88820.025*
C110.48346 (14)0.14581 (12)0.81816 (9)0.01552 (18)
C20.99836 (15)0.40819 (12)0.39406 (9)0.01792 (19)
H170.87640.45680.37770.022*
C130.32377 (16)0.36116 (12)0.95720 (10)0.01941 (19)
C31.15214 (16)0.48201 (13)0.32212 (10)0.01972 (19)
H31.13380.58060.25720.024*
C120.59034 (14)0.17592 (12)0.88891 (9)0.01760 (18)
H120.71660.12350.88890.021*
C41.33828 (16)0.40979 (13)0.34565 (10)0.0210 (2)
H41.44130.46160.29650.025*
C150.29365 (14)0.22899 (13)0.81854 (10)0.01916 (19)
H150.22080.21160.77140.023*
C160.50987 (15)0.28339 (13)0.95926 (10)0.01933 (19)
H160.58090.30211.00680.023*
U11U22U33U12U13U23
Cl10.01931 (13)0.01748 (12)0.02433 (13)−0.00220 (9)−0.00775 (9)0.00240 (9)
N10.0150 (4)0.0161 (4)0.0176 (4)−0.0027 (3)−0.0047 (3)−0.0039 (3)
N20.0128 (4)0.0214 (4)0.0208 (4)−0.0023 (3)−0.0036 (3)−0.0099 (3)
F10.0308 (4)0.0241 (3)0.0268 (3)−0.0030 (3)−0.0011 (3)−0.0146 (3)
C70.0154 (4)0.0129 (4)0.0162 (4)−0.0015 (3)−0.0049 (3)−0.0037 (3)
C10.0149 (4)0.0143 (4)0.0149 (4)−0.0024 (3)−0.0030 (3)−0.0052 (3)
C100.0139 (4)0.0152 (4)0.0183 (4)−0.0028 (3)−0.0019 (3)−0.0045 (3)
C80.0137 (4)0.0142 (4)0.0148 (4)−0.0028 (3)−0.0028 (3)−0.0049 (3)
C50.0159 (4)0.0216 (5)0.0208 (5)−0.0063 (4)−0.0028 (3)−0.0050 (4)
C60.0147 (4)0.0157 (4)0.0161 (4)−0.0033 (3)−0.0033 (3)−0.0054 (3)
C90.0134 (4)0.0156 (4)0.0164 (4)−0.0016 (3)−0.0037 (3)−0.0049 (3)
C140.0181 (4)0.0211 (5)0.0200 (5)−0.0001 (4)−0.0030 (4)−0.0063 (4)
C110.0152 (4)0.0152 (4)0.0143 (4)−0.0044 (3)−0.0012 (3)−0.0025 (3)
C20.0197 (4)0.0159 (4)0.0169 (4)−0.0022 (3)−0.0044 (3)−0.0035 (3)
C130.0242 (5)0.0161 (4)0.0165 (4)−0.0047 (4)−0.0001 (4)−0.0054 (3)
C30.0239 (5)0.0166 (4)0.0174 (4)−0.0054 (4)−0.0037 (4)−0.0029 (3)
C120.0165 (4)0.0180 (4)0.0180 (4)−0.0051 (3)−0.0030 (3)−0.0043 (3)
C40.0210 (5)0.0212 (5)0.0202 (5)−0.0088 (4)−0.0012 (4)−0.0043 (4)
C150.0165 (4)0.0220 (5)0.0196 (4)−0.0016 (4)−0.0051 (3)−0.0073 (4)
C160.0221 (5)0.0199 (4)0.0175 (4)−0.0077 (4)−0.0037 (4)−0.0050 (4)
Cl1—C71.7434 (10)C5—H50.93
N1—C71.3016 (13)C9—H90.93
N1—C61.3732 (12)C14—C131.3792 (15)
N2—C111.3792 (12)C14—C151.3878 (14)
N2—C101.4388 (13)C14—H140.93
N2—H180.86C11—C121.4011 (14)
F1—C131.3661 (12)C11—C151.4077 (14)
C7—C81.4217 (13)C2—C31.3700 (14)
C1—C91.4133 (13)C2—H170.93
C1—C61.4149 (13)C13—C161.3737 (15)
C1—C21.4164 (13)C3—C41.4128 (15)
C10—C81.5161 (13)C3—H30.93
C10—H10A0.97C12—C161.3936 (14)
C10—H10B0.97C12—H120.93
C8—C91.3714 (13)C4—H40.93
C5—C41.3726 (15)C15—H150.93
C5—C61.4136 (13)C16—H160.93
C7—N1—C6117.48 (8)C13—C14—C15118.66 (10)
C11—N2—C10121.76 (8)C13—C14—H14120.7
C11—N2—H18119.1C15—C14—H14120.7
C10—N2—H18119.1N2—C11—C12122.23 (9)
N1—C7—C8126.51 (9)N2—C11—C15119.59 (9)
N1—C7—Cl1115.47 (7)C12—C11—C15118.18 (9)
C8—C7—Cl1118.01 (7)C3—C2—C1120.15 (9)
C9—C1—C6117.92 (9)C3—C2—H17119.9
C9—C1—C2123.09 (9)C1—C2—H17119.9
C6—C1—C2118.98 (9)F1—C13—C16119.13 (9)
N2—C10—C8113.32 (8)F1—C13—C14118.49 (9)
N2—C10—H10A108.9C16—C13—C14122.38 (10)
C8—C10—H10A108.9C2—C3—C4120.64 (9)
N2—C10—H10B108.9C2—C3—H3119.7
C8—C10—H10B108.9C4—C3—H3119.7
H10A—C10—H10B107.7C16—C12—C11120.86 (9)
C9—C8—C7115.61 (8)C16—C12—H12119.6
C9—C8—C10122.70 (8)C11—C12—H12119.6
C7—C8—C10121.69 (8)C5—C4—C3120.52 (9)
C4—C5—C6119.71 (9)C5—C4—H4119.7
C4—C5—H5120.1C3—C4—H4119.7
C6—C5—H5120.1C14—C15—C11121.05 (9)
N1—C6—C5118.51 (9)C14—C15—H15119.5
N1—C6—C1121.50 (9)C11—C15—H15119.5
C5—C6—C1119.99 (9)C13—C16—C12118.87 (9)
C8—C9—C1120.95 (9)C13—C16—H16120.6
C8—C9—H9119.5C12—C16—H16120.6
C1—C9—H9119.5
C6—N1—C7—C8−0.94 (15)C6—C1—C9—C8−1.63 (14)
C6—N1—C7—Cl1179.70 (7)C2—C1—C9—C8179.30 (9)
C11—N2—C10—C8−82.06 (11)C10—N2—C11—C124.96 (14)
N1—C7—C8—C90.82 (15)C10—N2—C11—C15−174.83 (9)
Cl1—C7—C8—C9−179.83 (7)C9—C1—C2—C3178.48 (9)
N1—C7—C8—C10−178.91 (9)C6—C1—C2—C3−0.58 (15)
Cl1—C7—C8—C100.43 (13)C15—C14—C13—F1−179.04 (9)
N2—C10—C8—C9−14.02 (13)C15—C14—C13—C160.18 (16)
N2—C10—C8—C7165.69 (9)C1—C2—C3—C40.04 (16)
C7—N1—C6—C5179.69 (9)N2—C11—C12—C16−178.83 (9)
C7—N1—C6—C1−0.29 (14)C15—C11—C12—C160.96 (14)
C4—C5—C6—N1179.83 (9)C6—C5—C4—C3−0.37 (16)
C4—C5—C6—C1−0.19 (15)C2—C3—C4—C50.44 (16)
C9—C1—C6—N11.53 (14)C13—C14—C15—C110.14 (16)
C2—C1—C6—N1−179.36 (9)N2—C11—C15—C14179.10 (9)
C9—C1—C6—C5−178.45 (9)C12—C11—C15—C14−0.70 (15)
C2—C1—C6—C50.65 (14)F1—C13—C16—C12179.30 (9)
C7—C8—C9—C10.55 (14)C14—C13—C16—C120.08 (16)
C10—C8—C9—C1−179.73 (8)C11—C12—C16—C13−0.67 (15)
Cg1 and Cg2 are the centroids of the C1–C6 and C11–C16 rings, respectively.
D—H···AD—HH···AD···AD—H···A
N2—H18···N1i0.862.303.1353 (12)165
C4—H4···Cg2ii0.932.913.7494 (13)151
C10—H10A···Cg1iii0.972.623.5365 (12)157
C10—H10B···Cg2iv0.972.983.8083 (11)145
Table 1

Hydrogen-bond geometry (Å, °)

Cg1 and Cg2 are the centroids of the C1–C6 and C11–C16 rings, respectively.

D—H⋯AD—HH⋯ADAD—H⋯A
N2—H18⋯N1i0.862.303.1353 (12)165
C4—H4⋯Cg2ii0.932.913.7494 (13)151
C10—H10ACg1iii0.972.623.5365 (12)157
C10—H10BCg2iv0.972.983.8083 (11)145

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

  8 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Antiprotozoal 4-aryloxy-2-aminoquinolines and related compounds.

Authors:  D G Markees; V C Dewey; G W Kidder
Journal:  J Med Chem       Date:  1970-03       Impact factor: 7.446

3.  A Cycloaddition Approach toward the Synthesis of Substituted Indolines and Tetrahydroquinolines.

Authors:  Albert Padwa; Michael A. Brodney; Bing Liu; Kyosuke Satake; Tianhua Wu
Journal:  J Org Chem       Date:  1999-05-14       Impact factor: 4.354

4.  8-Chloro-2-methyl-quinoline.

Authors:  Tian-Quan Wu; Jian-Hua Wang; Fang Shen; Ai-Xi Hu
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-06-06

5.  2-Chloro-3-hydroxy-methyl-6-methoxy-quinoline.

Authors:  F Nawaz Khan; S Mohana Roopan; Venkatesha R Hathwar; Seik Weng Ng
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-12-19

6.  2,4-Diamino-6,7-dimethoxyquinoline derivatives as alpha 1-adrenoceptor antagonists and antihypertensive agents.

Authors:  S F Campbell; J D Hardstone; M J Palmer
Journal:  J Med Chem       Date:  1988-05       Impact factor: 7.446

7.  2-Chloro-7-methyl-quinoline-3-carbaldehyde.

Authors:  R Subashini; F Nawaz Khan; Rajesh Kumar; Venkatesha R Hathwar; Seik Weng Ng
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-10-13

8.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  8 in total
  1 in total

1.  Crystal structures of five (2-chloro-quinolin-3-yl)methyl ethers: supra-molecular assembly in one and two dimensions mediated by hydrogen bonding and π-π stacking.

Authors:  Haliwana B V Sowmya; Tholappanavara H Suresha Kumara; Nagendrappa Gopalpur; Jerry P Jasinski; Sean P Millikan; Hemmige S Yathirajan; Christopher Glidewell
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2015-05-13
  1 in total

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