Literature DB >> 21587535

Eth-oxy-carbonyl-methyl 3-(4-chloro-benzyl-idene)dithio-carbazate.

Masoumeh Tabatabaee, Mahboubeh A Sharif, Robabeh Khalili, Masood Parvez.   

Abstract

Mol-ecules of the title compound, C(12)H(13)ClN(2)O(2)S(2), are linked into centrosymmetric dimers by pairs of inter-molecular N-H⋯S hydrogen bonds. In the crystal structure, there are π-π stacking inter-actions between symmetry-related benzene rings with a centroid-centroid distance of 3.7305 (13) Å, a perpendicular distance between the planes of 3.2851 (9) Å and a slippage of 1.768 Å. The structure is further stabilized by weak inter-molecular C-H⋯O hydrogen bonds.

Entities:  

Year:  2010        PMID: 21587535      PMCID: PMC2983262          DOI: 10.1107/S160053681003549X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the biological activity of related compounds, see: Gülerman et al. (2001 ▶); Duran et al. (2002 ▶). For related structures, see: Tabatabaee et al. (2006 ▶, 2007 ▶, 2008 ▶, 2009 ▶).

Experimental

Crystal data

C12H13ClN2O2S2 M = 316.81 Triclinic, a = 7.3425 (3) Å b = 10.3894 (4) Å c = 10.6457 (5) Å α = 116.535 (2)° β = 95.049 (2)° γ = 94.955 (2)° V = 716.50 (5) Å3 Z = 2 Mo Kα radiation μ = 0.56 mm−1 T = 173 K 0.12 × 0.08 × 0.06 mm

Data collection

Nonius KappaCCD diffractometer with APEXII CCD Absorption correction: multi-scan (SORTAV; Blessing, 1997 ▶) T min = 0.936, T max = 0.967 12341 measured reflections 3996 independent reflections 3361 reflections with I > 2σ(I) R int = 0.031

Refinement

R[F 2 > 2σ(F 2)] = 0.045 wR(F 2) = 0.104 S = 1.09 3996 reflections 173 parameters H-atom parameters constrained Δρmax = 0.47 e Å−3 Δρmin = −0.26 e Å−3 Data collection: COLLECT (Hooft, 1998 ▶); cell refinement: DENZO (Otwinowski & Minor, 1997 ▶); data reduction: SCALEPACK (Otwinowski & Minor, 1997 ▶); program(s) used to solve structure: SIR92 (Altomare et al., 1994 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks global, I. DOI: 10.1107/S160053681003549X/lh5124sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S160053681003549X/lh5124Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C12H13ClN2O2S2Z = 2
Mr = 316.81F(000) = 328
Triclinic, P1Dx = 1.468 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 7.3425 (3) ÅCell parameters from 3737 reflections
b = 10.3894 (4) Åθ = 1.0–29.6°
c = 10.6457 (5) ŵ = 0.56 mm1
α = 116.535 (2)°T = 173 K
β = 95.049 (2)°Block, colorless
γ = 94.955 (2)°0.12 × 0.08 × 0.06 mm
V = 716.50 (5) Å3
Nonius KappaCCD diffractometer with APEXII CCD3996 independent reflections
Radiation source: fine-focus sealed tube3361 reflections with I > 2σ(I)
graphiteRint = 0.031
ω and φ scansθmax = 29.7°, θmin = 2.2°
Absorption correction: multi-scan (SORTAV; Blessing, 1997)h = −10→10
Tmin = 0.936, Tmax = 0.967k = −14→14
12341 measured reflectionsl = −14→14
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.045Hydrogen site location: difference Fourier map
wR(F2) = 0.104H-atom parameters constrained
S = 1.09w = 1/[σ2(Fo2) + (0.0252P)2 + 0.6628P] where P = (Fo2 + 2Fc2)/3
3996 reflections(Δ/σ)max < 0.001
173 parametersΔρmax = 0.47 e Å3
0 restraintsΔρmin = −0.26 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cl10.89852 (9)0.10405 (6)0.44205 (7)0.04491 (16)
S10.37647 (8)0.94428 (5)0.28183 (6)0.03285 (14)
S20.37807 (7)0.61903 (5)0.12742 (5)0.02750 (12)
O1−0.0267 (2)0.65882 (18)0.13349 (16)0.0355 (3)
O2−0.0309 (2)0.76565 (17)−0.00860 (17)0.0348 (3)
N10.5839 (2)0.65588 (17)0.36811 (18)0.0251 (3)
N20.5413 (2)0.78764 (17)0.38235 (17)0.0259 (3)
H2N0.58130.86810.46100.031*
C10.7182 (2)0.5188 (2)0.4706 (2)0.0224 (3)
C20.8110 (3)0.5168 (2)0.5894 (2)0.0260 (4)
H20.83830.60390.67630.031*
C30.8640 (3)0.3890 (2)0.5824 (2)0.0280 (4)
H30.92710.38800.66370.034*
C40.8236 (3)0.2634 (2)0.4555 (2)0.0292 (4)
C50.7266 (3)0.2612 (2)0.3364 (2)0.0306 (4)
H50.69730.17330.25050.037*
C60.6734 (3)0.3889 (2)0.3448 (2)0.0263 (4)
H60.60570.38840.26420.032*
C70.6691 (3)0.6550 (2)0.4777 (2)0.0244 (4)
H70.70050.74280.56360.029*
C80.4379 (3)0.7910 (2)0.2744 (2)0.0238 (4)
C90.2345 (3)0.6622 (2)0.0105 (2)0.0291 (4)
H9A0.29840.74770.00610.035*
H9B0.21720.5795−0.08610.035*
C100.0471 (3)0.6945 (2)0.0554 (2)0.0281 (4)
C11−0.2133 (3)0.8016 (3)0.0258 (3)0.0419 (5)
H11A−0.20920.85710.12980.050*
H11B−0.30240.7118−0.00900.050*
C12−0.2709 (4)0.8910 (3)−0.0444 (3)0.0506 (6)
H12A−0.39510.9147−0.02510.061*
H12B−0.27160.8359−0.14700.061*
H12C−0.18390.9809−0.00710.061*
U11U22U33U12U13U23
Cl10.0472 (3)0.0344 (3)0.0633 (4)0.0143 (2)0.0028 (3)0.0306 (3)
S10.0483 (3)0.0196 (2)0.0283 (3)0.0074 (2)−0.0043 (2)0.01017 (19)
S20.0359 (3)0.0192 (2)0.0239 (2)0.00528 (18)0.00303 (19)0.00682 (18)
O10.0363 (8)0.0418 (9)0.0338 (8)0.0012 (7)0.0033 (6)0.0230 (7)
O20.0362 (8)0.0390 (8)0.0361 (8)0.0066 (7)0.0033 (6)0.0233 (7)
N10.0275 (8)0.0193 (7)0.0301 (8)0.0055 (6)0.0036 (6)0.0124 (7)
N20.0331 (9)0.0173 (7)0.0253 (8)0.0037 (6)0.0000 (6)0.0087 (6)
C10.0212 (8)0.0232 (8)0.0266 (9)0.0048 (7)0.0044 (7)0.0143 (7)
C20.0254 (9)0.0293 (9)0.0253 (9)0.0058 (7)0.0051 (7)0.0136 (8)
C30.0243 (9)0.0367 (10)0.0311 (10)0.0070 (8)0.0045 (7)0.0219 (9)
C40.0263 (9)0.0290 (10)0.0405 (11)0.0073 (8)0.0071 (8)0.0223 (9)
C50.0365 (11)0.0243 (9)0.0306 (10)0.0066 (8)0.0039 (8)0.0121 (8)
C60.0293 (9)0.0270 (9)0.0251 (9)0.0046 (7)0.0013 (7)0.0144 (8)
C70.0238 (8)0.0215 (8)0.0268 (9)0.0047 (7)0.0048 (7)0.0098 (7)
C80.0274 (9)0.0207 (8)0.0239 (9)0.0030 (7)0.0045 (7)0.0108 (7)
C90.0361 (10)0.0271 (9)0.0215 (9)0.0003 (8)0.0013 (8)0.0098 (8)
C100.0336 (10)0.0238 (9)0.0237 (9)−0.0009 (8)−0.0020 (8)0.0099 (8)
C110.0372 (12)0.0431 (13)0.0504 (14)0.0093 (10)0.0063 (10)0.0252 (12)
C120.0539 (16)0.0440 (14)0.0556 (16)0.0164 (12)0.0016 (13)0.0237 (13)
Cl1—C41.739 (2)C3—C41.380 (3)
S1—C81.6618 (19)C3—H30.9500
S2—C81.7548 (19)C4—C51.389 (3)
S2—C91.792 (2)C5—C61.382 (3)
O1—C101.201 (2)C5—H50.9500
O2—C101.339 (2)C6—H60.9500
O2—C111.455 (3)C7—H70.9500
N1—C71.279 (2)C9—C101.513 (3)
N1—N21.375 (2)C9—H9A0.9900
N2—C81.337 (2)C9—H9B0.9900
N2—H2N0.8800C11—C121.493 (3)
C1—C21.392 (2)C11—H11A0.9900
C1—C61.398 (3)C11—H11B0.9900
C1—C71.462 (2)C12—H12A0.9800
C2—C31.388 (3)C12—H12B0.9800
C2—H20.9500C12—H12C0.9800
C8—S2—C9100.82 (9)C1—C7—H7120.1
C10—O2—C11115.16 (17)N2—C8—S1122.37 (14)
C7—N1—N2116.85 (16)N2—C8—S2112.84 (13)
C8—N2—N1118.65 (16)S1—C8—S2124.78 (11)
C8—N2—H2N120.7C10—C9—S2113.36 (14)
N1—N2—H2N120.7C10—C9—H9A108.9
C2—C1—C6119.06 (17)S2—C9—H9A108.9
C2—C1—C7120.29 (17)C10—C9—H9B108.9
C6—C1—C7120.66 (16)S2—C9—H9B108.9
C3—C2—C1120.73 (18)H9A—C9—H9B107.7
C3—C2—H2119.6O1—C10—O2123.7 (2)
C1—C2—H2119.6O1—C10—C9126.00 (19)
C4—C3—C2118.96 (18)O2—C10—C9110.25 (17)
C4—C3—H3120.5O2—C11—C12107.7 (2)
C2—C3—H3120.5O2—C11—H11A110.2
C3—C4—C5121.55 (18)C12—C11—H11A110.2
C3—C4—Cl1119.71 (15)O2—C11—H11B110.2
C5—C4—Cl1118.73 (16)C12—C11—H11B110.2
C6—C5—C4119.01 (19)H11A—C11—H11B108.5
C6—C5—H5120.5C11—C12—H12A109.5
C4—C5—H5120.5C11—C12—H12B109.5
C5—C6—C1120.63 (17)H12A—C12—H12B109.5
C5—C6—H6119.7C11—C12—H12C109.5
C1—C6—H6119.7H12A—C12—H12C109.5
N1—C7—C1119.89 (17)H12B—C12—H12C109.5
N1—C7—H7120.1
C7—N1—N2—C8−174.09 (18)C2—C1—C7—N1−179.95 (18)
C6—C1—C2—C32.1 (3)C6—C1—C7—N10.2 (3)
C7—C1—C2—C3−177.71 (18)N1—N2—C8—S1179.15 (14)
C1—C2—C3—C40.1 (3)N1—N2—C8—S2−1.3 (2)
C2—C3—C4—C5−1.9 (3)C9—S2—C8—N2177.22 (15)
C2—C3—C4—Cl1176.88 (15)C9—S2—C8—S1−3.25 (16)
C3—C4—C5—C61.5 (3)C8—S2—C9—C10−73.08 (15)
Cl1—C4—C5—C6−177.31 (16)C11—O2—C10—O11.6 (3)
C4—C5—C6—C10.8 (3)C11—O2—C10—C9179.48 (17)
C2—C1—C6—C5−2.6 (3)S2—C9—C10—O1−20.3 (3)
C7—C1—C6—C5177.28 (18)S2—C9—C10—O2161.95 (14)
N2—N1—C7—C1179.74 (16)C10—O2—C11—C12175.16 (19)
D—H···AD—HH···AD···AD—H···A
N2—H2N···S1i0.882.523.3669 (17)161
C3—H3···O1ii0.952.483.410 (2)166
C9—H9B···O1iii0.992.553.153 (3)119
C9—H9A···S10.992.693.066 (2)103
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N2—H2N⋯S1i0.882.523.3669 (17)161
C3—H3⋯O1ii0.952.483.410 (2)166
C9—H9B⋯O1iii0.992.553.153 (3)119

Symmetry codes: (i) ; (ii) ; (iii) .

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