Literature DB >> 21587533

2-(2-Nitro-anilino)-4,5,6,7-tetra-hydro-benzo[b]thio-phene-3-carbonitrile.

Francisco J B Mendonça Junior, Maria do Carmo A de Lima, Suely L Galdino, Ivan R Pitta, Carlos A de Simone.   

Abstract

The title compound, C(15)H(13)N(3)O(2)S, was synthesized by the reaction of 2-amino-5,6,7,8-tetra-hydro-4H-cyclo-hepta-[b]thio-phene-3-carbonitrile and o-fluoro-nitro-benzene. The dihedral angle between the thio-phene and nitro-phenyl rings is 75.15 (2)°. In the crystal, inter-molecular N-H⋯N and C-H⋯O inter-actions lead to the formation of a supra-molecular chain extending along the c-axis direction.

Entities:  

Year:  2010        PMID: 21587533      PMCID: PMC2983395          DOI: 10.1107/S1600536810035439

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to 2-substituted thio­phenes, see: Puterová et al. (2009 ▶). For the biological activity of 2-amino-benzo[b]thio­phene derivatives, see: Fakhr et al. (2008 ▶); Baraldi et al. (2006 ▶). For the synthesis of 2-amino thio­phenes, see: Gewald et al. (1966 ▶). For puckering parameters, see: Cremer & Pople (1975 ▶).

Experimental

Crystal data

C15H13N3O2S M = 299.34 Monoclinic, a = 13.2764 (4) Å b = 13.4447 (7) Å c = 8.2237 (4) Å β = 106.794 (2)° V = 1405.30 (11) Å3 Z = 4 Mo Kα radiation μ = 0.24 mm−1 T = 295 K 0.27 × 0.19 × 0.17 mm

Data collection

Nonius KappaCCD diffractometer 9590 measured reflections 3241 independent reflections 2351 reflections with I > 2σ(I) R int = 0.051

Refinement

R[F 2 > 2σ(F 2)] = 0.057 wR(F 2) = 0.174 S = 1.06 3241 reflections 192 parameters H-atom parameters constrained Δρmax = 0.45 e Å−3 Δρmin = −0.38 e Å−3 Data collection: COLLECT (Nonius, 1997 ▶); cell refinement: SCALEPACK (Otwinowski & Minor, 1997 ▶); data reduction: DENZO (Otwinowski & Minor, 1997 ▶) and SCALEPACK; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536810035439/tk2704sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810035439/tk2704Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C15H13N3O2SF(000) = 624
Mr = 299.34Dx = 1.415 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 4953 reflections
a = 13.2764 (4) Åθ = 2.9–27.5°
b = 13.4447 (7) ŵ = 0.24 mm1
c = 8.2237 (4) ÅT = 295 K
β = 106.794 (2)°Prism, yellow
V = 1405.30 (11) Å30.27 × 0.19 × 0.17 mm
Z = 4
Nonius KappaCCD diffractometer2351 reflections with I > 2σ(I)
Radiation source: Enraf Nonius FR590Rint = 0.051
horizonally mounted graphite crystalθmax = 27.5°, θmin = 3.0°
Detector resolution: 9 pixels mm-1h = −17→17
CCD rotation images,thick slices scansk = −17→17
9590 measured reflectionsl = −9→10
3241 independent reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.057H-atom parameters constrained
wR(F2) = 0.174w = 1/[σ2(Fo2) + (0.1015P)2 + 0.2662P] where P = (Fo2 + 2Fc2)/3
S = 1.06(Δ/σ)max < 0.001
3241 reflectionsΔρmax = 0.45 e Å3
192 parametersΔρmin = −0.38 e Å3
0 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.133 (13)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C1−0.22931 (15)−0.11377 (16)−0.8690 (3)0.0489 (5)
C2−0.17013 (15)−0.19140 (16)−0.7859 (2)0.0470 (5)
C3−0.06070 (15)−0.16847 (17)−0.7171 (3)0.0494 (5)
C40.02377 (17)−0.2391 (2)−0.6205 (3)0.0620 (6)
H4A0.0009−0.2717−0.53220.074*
H4B0.0352−0.2898−0.69720.074*
C50.1254 (2)−0.1846 (3)−0.5417 (5)0.1058 (12)
H5A0.1231−0.1586−0.43280.127*
H5B0.1823−0.2325−0.51960.127*
C60.1505 (2)−0.1041 (3)−0.6378 (6)0.1056 (13)
H6A0.1667−0.1319−0.73620.127*
H6B0.2138−0.0720−0.56860.127*
C70.06661 (19)−0.0251 (2)−0.6990 (4)0.0700 (7)
H7A0.07050.0225−0.60880.084*
H7B0.07830.0102−0.79480.084*
C8−0.04015 (15)−0.07297 (18)−0.7510 (3)0.0540 (5)
C9−0.41366 (15)−0.11662 (14)−0.8689 (3)0.0449 (5)
C10−0.38494 (18)−0.10942 (18)−0.6915 (3)0.0560 (6)
H10−0.3142−0.1031−0.63140.067*
C11−0.4588 (2)−0.1114 (2)−0.6043 (3)0.0649 (6)
H11−0.4374−0.1062−0.48650.078*
C12−0.5649 (2)−0.1210 (2)−0.6897 (4)0.0703 (7)
H12−0.6145−0.1229−0.62980.084*
C13−0.59545 (18)−0.12779 (18)−0.8620 (4)0.0622 (6)
H13−0.6665−0.1338−0.92020.075*
C14−0.52138 (16)−0.12570 (15)−0.9526 (3)0.0486 (5)
C15−0.21465 (15)−0.28666 (18)−0.7727 (3)0.0519 (5)
N1−0.25004 (17)−0.36281 (16)−0.7606 (3)0.0673 (6)
N2−0.33714 (13)−0.11309 (15)−0.9523 (2)0.0524 (5)
H2−0.3569−0.1103−1.06140.063*
N3−0.56173 (15)−0.13233 (14)−1.1361 (3)0.0572 (5)
O1−0.49971 (14)−0.12880 (15)−1.2218 (2)0.0713 (5)
O2−0.65641 (14)−0.14080 (17)−1.2012 (3)0.0866 (6)
S1−0.15219 (4)−0.01029 (5)−0.86321 (8)0.0610 (3)
U11U22U33U12U13U23
C10.0350 (10)0.0626 (12)0.0490 (11)0.0004 (8)0.0119 (8)0.0021 (9)
C20.0348 (9)0.0602 (12)0.0452 (10)0.0001 (8)0.0105 (8)0.0005 (9)
C30.0342 (10)0.0649 (12)0.0479 (10)0.0015 (8)0.0103 (8)−0.0039 (9)
C40.0414 (11)0.0756 (15)0.0637 (13)0.0065 (10)0.0066 (10)0.0019 (12)
C50.0452 (15)0.113 (3)0.134 (3)0.0006 (15)−0.0129 (17)0.017 (2)
C60.0401 (14)0.111 (3)0.155 (4)−0.0094 (14)0.0110 (17)0.012 (2)
C70.0415 (11)0.0811 (17)0.0843 (17)−0.0116 (11)0.0133 (11)−0.0086 (14)
C80.0371 (10)0.0652 (13)0.0598 (12)−0.0011 (9)0.0140 (9)−0.0044 (10)
C90.0365 (9)0.0465 (10)0.0504 (10)0.0035 (7)0.0104 (8)0.0042 (8)
C100.0433 (11)0.0699 (14)0.0537 (12)0.0050 (10)0.0123 (9)0.0017 (10)
C110.0588 (14)0.0817 (17)0.0590 (13)0.0141 (12)0.0246 (11)0.0063 (12)
C120.0552 (14)0.0834 (18)0.0825 (18)0.0101 (12)0.0363 (13)0.0121 (14)
C130.0391 (11)0.0643 (14)0.0836 (17)0.0018 (9)0.0182 (11)0.0075 (12)
C140.0375 (10)0.0461 (10)0.0590 (12)0.0030 (8)0.0088 (9)0.0038 (9)
C150.0373 (10)0.0654 (13)0.0502 (11)0.0030 (9)0.0081 (8)0.0052 (10)
N10.0534 (11)0.0684 (13)0.0759 (13)−0.0033 (10)0.0121 (10)0.0102 (10)
N20.0335 (8)0.0765 (12)0.0444 (9)0.0030 (8)0.0069 (7)0.0035 (8)
N30.0420 (9)0.0574 (11)0.0631 (11)0.0020 (8)0.0010 (8)−0.0018 (9)
O10.0580 (10)0.0953 (14)0.0540 (9)−0.0013 (9)0.0056 (8)0.0017 (9)
O20.0413 (9)0.1135 (16)0.0871 (13)0.0028 (9)−0.0099 (9)−0.0141 (11)
S10.0445 (4)0.0594 (4)0.0757 (5)−0.0014 (2)0.0119 (3)0.0052 (3)
C1—C21.365 (3)C7—H7B0.9700
C1—N21.397 (2)C8—S11.727 (2)
C1—S11.720 (2)C9—N21.381 (2)
C2—C151.428 (3)C9—C101.401 (3)
C2—C31.432 (3)C9—C141.402 (3)
C3—C81.358 (3)C10—C111.372 (3)
C3—C41.508 (3)C10—H100.9300
C4—C51.507 (4)C11—C121.386 (4)
C4—H4A0.9700C11—H110.9300
C4—H4B0.9700C12—C131.360 (4)
C5—C61.436 (5)C12—H120.9300
C5—H5A0.9700C13—C141.395 (3)
C5—H5B0.9700C13—H130.9300
C6—C71.516 (4)C14—N31.451 (3)
C6—H6A0.9700C15—N11.143 (3)
C6—H6B0.9700N2—H20.8600
C7—C81.502 (3)N3—O21.221 (3)
C7—H7A0.9700N3—O11.230 (3)
C2—C1—N2127.62 (19)C6—C7—H7B109.7
C2—C1—S1110.65 (15)H7A—C7—H7B108.2
N2—C1—S1121.72 (16)C3—C8—C7125.1 (2)
C1—C2—C15122.20 (18)C3—C8—S1112.21 (15)
C1—C2—C3113.87 (19)C7—C8—S1122.6 (2)
C15—C2—C3123.92 (19)N2—C9—C10119.80 (18)
C8—C3—C2111.30 (19)N2—C9—C14123.48 (19)
C8—C3—C4122.69 (19)C10—C9—C14116.71 (19)
C2—C3—C4126.0 (2)C11—C10—C9121.5 (2)
C5—C4—C3111.0 (2)C11—C10—H10119.2
C5—C4—H4A109.4C9—C10—H10119.2
C3—C4—H4A109.4C10—C11—C12120.8 (2)
C5—C4—H4B109.4C10—C11—H11119.6
C3—C4—H4B109.4C12—C11—H11119.6
H4A—C4—H4B108.0C13—C12—C11119.2 (2)
C6—C5—C4116.8 (3)C13—C12—H12120.4
C6—C5—H5A108.1C11—C12—H12120.4
C4—C5—H5A108.1C12—C13—C14120.7 (2)
C6—C5—H5B108.1C12—C13—H13119.6
C4—C5—H5B108.1C14—C13—H13119.6
H5A—C5—H5B107.3C13—C14—C9121.1 (2)
C5—C6—C7116.4 (3)C13—C14—N3116.7 (2)
C5—C6—H6A108.2C9—C14—N3122.25 (19)
C7—C6—H6A108.2N1—C15—C2179.4 (2)
C5—C6—H6B108.2C9—N2—C1123.57 (17)
C7—C6—H6B108.2C9—N2—H2118.2
H6A—C6—H6B107.3C1—N2—H2118.2
C8—C7—C6109.7 (2)O2—N3—O1121.8 (2)
C8—C7—H7A109.7O2—N3—C14119.0 (2)
C6—C7—H7A109.7O1—N3—C14119.12 (18)
C8—C7—H7B109.7C1—S1—C891.95 (10)
D—H···AD—HH···AD···AD—H···A
N2—H2···N1i0.862.483.093 (3)129
C11—H11···O1ii0.932.563.351 (3)143
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N2—H2⋯N1i0.862.483.093 (3)129
C11—H11⋯O1ii0.932.563.351 (3)143

Symmetry codes: (i) ; (ii) .

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