| Literature DB >> 21587533 |
Francisco J B Mendonça Junior, Maria do Carmo A de Lima, Suely L Galdino, Ivan R Pitta, Carlos A de Simone.
Abstract
The title compound, C(15)H(13)N(3)O(2)S, was synthesized by the reaction of 2-amino-5,6,7,8-tetra-hydro-4H-cyclo-hepta-[b]thio-phene-3-carbonitrile and o-fluoro-nitro-benzene. The dihedral angle between the thio-phene and nitro-phenyl rings is 75.15 (2)°. In the crystal, inter-molecular N-H⋯N and C-H⋯O inter-actions lead to the formation of a supra-molecular chain extending along the c-axis direction.Entities:
Year: 2010 PMID: 21587533 PMCID: PMC2983395 DOI: 10.1107/S1600536810035439
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C15H13N3O2S | |
| Monoclinic, | Mo |
| Hall symbol: -P 2ybc | Cell parameters from 4953 reflections |
| θ = 2.9–27.5° | |
| µ = 0.24 mm−1 | |
| β = 106.794 (2)° | Prism, yellow |
| 0.27 × 0.19 × 0.17 mm | |
| Nonius KappaCCD diffractometer | 2351 reflections with |
| Radiation source: Enraf Nonius FR590 | |
| horizonally mounted graphite crystal | θmax = 27.5°, θmin = 3.0° |
| Detector resolution: 9 pixels mm-1 | |
| CCD rotation images,thick slices scans | |
| 9590 measured reflections | |
| 3241 independent reflections |
| Refinement on | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| H-atom parameters constrained | |
| (Δ/σ)max < 0.001 | |
| 3241 reflections | Δρmax = 0.45 e Å−3 |
| 192 parameters | Δρmin = −0.38 e Å−3 |
| 0 restraints | Extinction correction: |
| Primary atom site location: structure-invariant direct methods | Extinction coefficient: 0.133 (13) |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| C1 | −0.22931 (15) | −0.11377 (16) | −0.8690 (3) | 0.0489 (5) | |
| C2 | −0.17013 (15) | −0.19140 (16) | −0.7859 (2) | 0.0470 (5) | |
| C3 | −0.06070 (15) | −0.16847 (17) | −0.7171 (3) | 0.0494 (5) | |
| C4 | 0.02377 (17) | −0.2391 (2) | −0.6205 (3) | 0.0620 (6) | |
| H4A | 0.0009 | −0.2717 | −0.5322 | 0.074* | |
| H4B | 0.0352 | −0.2898 | −0.6972 | 0.074* | |
| C5 | 0.1254 (2) | −0.1846 (3) | −0.5417 (5) | 0.1058 (12) | |
| H5A | 0.1231 | −0.1586 | −0.4328 | 0.127* | |
| H5B | 0.1823 | −0.2325 | −0.5196 | 0.127* | |
| C6 | 0.1505 (2) | −0.1041 (3) | −0.6378 (6) | 0.1056 (13) | |
| H6A | 0.1667 | −0.1319 | −0.7362 | 0.127* | |
| H6B | 0.2138 | −0.0720 | −0.5686 | 0.127* | |
| C7 | 0.06661 (19) | −0.0251 (2) | −0.6990 (4) | 0.0700 (7) | |
| H7A | 0.0705 | 0.0225 | −0.6088 | 0.084* | |
| H7B | 0.0783 | 0.0102 | −0.7948 | 0.084* | |
| C8 | −0.04015 (15) | −0.07297 (18) | −0.7510 (3) | 0.0540 (5) | |
| C9 | −0.41366 (15) | −0.11662 (14) | −0.8689 (3) | 0.0449 (5) | |
| C10 | −0.38494 (18) | −0.10942 (18) | −0.6915 (3) | 0.0560 (6) | |
| H10 | −0.3142 | −0.1031 | −0.6314 | 0.067* | |
| C11 | −0.4588 (2) | −0.1114 (2) | −0.6043 (3) | 0.0649 (6) | |
| H11 | −0.4374 | −0.1062 | −0.4865 | 0.078* | |
| C12 | −0.5649 (2) | −0.1210 (2) | −0.6897 (4) | 0.0703 (7) | |
| H12 | −0.6145 | −0.1229 | −0.6298 | 0.084* | |
| C13 | −0.59545 (18) | −0.12779 (18) | −0.8620 (4) | 0.0622 (6) | |
| H13 | −0.6665 | −0.1338 | −0.9202 | 0.075* | |
| C14 | −0.52138 (16) | −0.12570 (15) | −0.9526 (3) | 0.0486 (5) | |
| C15 | −0.21465 (15) | −0.28666 (18) | −0.7727 (3) | 0.0519 (5) | |
| N1 | −0.25004 (17) | −0.36281 (16) | −0.7606 (3) | 0.0673 (6) | |
| N2 | −0.33714 (13) | −0.11309 (15) | −0.9523 (2) | 0.0524 (5) | |
| H2 | −0.3569 | −0.1103 | −1.0614 | 0.063* | |
| N3 | −0.56173 (15) | −0.13233 (14) | −1.1361 (3) | 0.0572 (5) | |
| O1 | −0.49971 (14) | −0.12880 (15) | −1.2218 (2) | 0.0713 (5) | |
| O2 | −0.65641 (14) | −0.14080 (17) | −1.2012 (3) | 0.0866 (6) | |
| S1 | −0.15219 (4) | −0.01029 (5) | −0.86321 (8) | 0.0610 (3) |
| C1 | 0.0350 (10) | 0.0626 (12) | 0.0490 (11) | 0.0004 (8) | 0.0119 (8) | 0.0021 (9) |
| C2 | 0.0348 (9) | 0.0602 (12) | 0.0452 (10) | 0.0001 (8) | 0.0105 (8) | 0.0005 (9) |
| C3 | 0.0342 (10) | 0.0649 (12) | 0.0479 (10) | 0.0015 (8) | 0.0103 (8) | −0.0039 (9) |
| C4 | 0.0414 (11) | 0.0756 (15) | 0.0637 (13) | 0.0065 (10) | 0.0066 (10) | 0.0019 (12) |
| C5 | 0.0452 (15) | 0.113 (3) | 0.134 (3) | 0.0006 (15) | −0.0129 (17) | 0.017 (2) |
| C6 | 0.0401 (14) | 0.111 (3) | 0.155 (4) | −0.0094 (14) | 0.0110 (17) | 0.012 (2) |
| C7 | 0.0415 (11) | 0.0811 (17) | 0.0843 (17) | −0.0116 (11) | 0.0133 (11) | −0.0086 (14) |
| C8 | 0.0371 (10) | 0.0652 (13) | 0.0598 (12) | −0.0011 (9) | 0.0140 (9) | −0.0044 (10) |
| C9 | 0.0365 (9) | 0.0465 (10) | 0.0504 (10) | 0.0035 (7) | 0.0104 (8) | 0.0042 (8) |
| C10 | 0.0433 (11) | 0.0699 (14) | 0.0537 (12) | 0.0050 (10) | 0.0123 (9) | 0.0017 (10) |
| C11 | 0.0588 (14) | 0.0817 (17) | 0.0590 (13) | 0.0141 (12) | 0.0246 (11) | 0.0063 (12) |
| C12 | 0.0552 (14) | 0.0834 (18) | 0.0825 (18) | 0.0101 (12) | 0.0363 (13) | 0.0121 (14) |
| C13 | 0.0391 (11) | 0.0643 (14) | 0.0836 (17) | 0.0018 (9) | 0.0182 (11) | 0.0075 (12) |
| C14 | 0.0375 (10) | 0.0461 (10) | 0.0590 (12) | 0.0030 (8) | 0.0088 (9) | 0.0038 (9) |
| C15 | 0.0373 (10) | 0.0654 (13) | 0.0502 (11) | 0.0030 (9) | 0.0081 (8) | 0.0052 (10) |
| N1 | 0.0534 (11) | 0.0684 (13) | 0.0759 (13) | −0.0033 (10) | 0.0121 (10) | 0.0102 (10) |
| N2 | 0.0335 (8) | 0.0765 (12) | 0.0444 (9) | 0.0030 (8) | 0.0069 (7) | 0.0035 (8) |
| N3 | 0.0420 (9) | 0.0574 (11) | 0.0631 (11) | 0.0020 (8) | 0.0010 (8) | −0.0018 (9) |
| O1 | 0.0580 (10) | 0.0953 (14) | 0.0540 (9) | −0.0013 (9) | 0.0056 (8) | 0.0017 (9) |
| O2 | 0.0413 (9) | 0.1135 (16) | 0.0871 (13) | 0.0028 (9) | −0.0099 (9) | −0.0141 (11) |
| S1 | 0.0445 (4) | 0.0594 (4) | 0.0757 (5) | −0.0014 (2) | 0.0119 (3) | 0.0052 (3) |
| C1—C2 | 1.365 (3) | C7—H7B | 0.9700 |
| C1—N2 | 1.397 (2) | C8—S1 | 1.727 (2) |
| C1—S1 | 1.720 (2) | C9—N2 | 1.381 (2) |
| C2—C15 | 1.428 (3) | C9—C10 | 1.401 (3) |
| C2—C3 | 1.432 (3) | C9—C14 | 1.402 (3) |
| C3—C8 | 1.358 (3) | C10—C11 | 1.372 (3) |
| C3—C4 | 1.508 (3) | C10—H10 | 0.9300 |
| C4—C5 | 1.507 (4) | C11—C12 | 1.386 (4) |
| C4—H4A | 0.9700 | C11—H11 | 0.9300 |
| C4—H4B | 0.9700 | C12—C13 | 1.360 (4) |
| C5—C6 | 1.436 (5) | C12—H12 | 0.9300 |
| C5—H5A | 0.9700 | C13—C14 | 1.395 (3) |
| C5—H5B | 0.9700 | C13—H13 | 0.9300 |
| C6—C7 | 1.516 (4) | C14—N3 | 1.451 (3) |
| C6—H6A | 0.9700 | C15—N1 | 1.143 (3) |
| C6—H6B | 0.9700 | N2—H2 | 0.8600 |
| C7—C8 | 1.502 (3) | N3—O2 | 1.221 (3) |
| C7—H7A | 0.9700 | N3—O1 | 1.230 (3) |
| C2—C1—N2 | 127.62 (19) | C6—C7—H7B | 109.7 |
| C2—C1—S1 | 110.65 (15) | H7A—C7—H7B | 108.2 |
| N2—C1—S1 | 121.72 (16) | C3—C8—C7 | 125.1 (2) |
| C1—C2—C15 | 122.20 (18) | C3—C8—S1 | 112.21 (15) |
| C1—C2—C3 | 113.87 (19) | C7—C8—S1 | 122.6 (2) |
| C15—C2—C3 | 123.92 (19) | N2—C9—C10 | 119.80 (18) |
| C8—C3—C2 | 111.30 (19) | N2—C9—C14 | 123.48 (19) |
| C8—C3—C4 | 122.69 (19) | C10—C9—C14 | 116.71 (19) |
| C2—C3—C4 | 126.0 (2) | C11—C10—C9 | 121.5 (2) |
| C5—C4—C3 | 111.0 (2) | C11—C10—H10 | 119.2 |
| C5—C4—H4A | 109.4 | C9—C10—H10 | 119.2 |
| C3—C4—H4A | 109.4 | C10—C11—C12 | 120.8 (2) |
| C5—C4—H4B | 109.4 | C10—C11—H11 | 119.6 |
| C3—C4—H4B | 109.4 | C12—C11—H11 | 119.6 |
| H4A—C4—H4B | 108.0 | C13—C12—C11 | 119.2 (2) |
| C6—C5—C4 | 116.8 (3) | C13—C12—H12 | 120.4 |
| C6—C5—H5A | 108.1 | C11—C12—H12 | 120.4 |
| C4—C5—H5A | 108.1 | C12—C13—C14 | 120.7 (2) |
| C6—C5—H5B | 108.1 | C12—C13—H13 | 119.6 |
| C4—C5—H5B | 108.1 | C14—C13—H13 | 119.6 |
| H5A—C5—H5B | 107.3 | C13—C14—C9 | 121.1 (2) |
| C5—C6—C7 | 116.4 (3) | C13—C14—N3 | 116.7 (2) |
| C5—C6—H6A | 108.2 | C9—C14—N3 | 122.25 (19) |
| C7—C6—H6A | 108.2 | N1—C15—C2 | 179.4 (2) |
| C5—C6—H6B | 108.2 | C9—N2—C1 | 123.57 (17) |
| C7—C6—H6B | 108.2 | C9—N2—H2 | 118.2 |
| H6A—C6—H6B | 107.3 | C1—N2—H2 | 118.2 |
| C8—C7—C6 | 109.7 (2) | O2—N3—O1 | 121.8 (2) |
| C8—C7—H7A | 109.7 | O2—N3—C14 | 119.0 (2) |
| C6—C7—H7A | 109.7 | O1—N3—C14 | 119.12 (18) |
| C8—C7—H7B | 109.7 | C1—S1—C8 | 91.95 (10) |
| H··· | ||||
| N2—H2···N1i | 0.86 | 2.48 | 3.093 (3) | 129 |
| C11—H11···O1ii | 0.93 | 2.56 | 3.351 (3) | 143 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| N2—H2⋯N1i | 0.86 | 2.48 | 3.093 (3) | 129 |
| C11—H11⋯O1ii | 0.93 | 2.56 | 3.351 (3) | 143 |
Symmetry codes: (i) ; (ii) .