Literature DB >> 21587499

Ranunculin.

Michael Benn1, Lois Jean Yelland, Masood Parvez.   

Abstract

In the title mol-ecule {systematic name: (5S)-5-[(β-d-gluco-pyranos-yloxy)meth-yl]furan-2(5H)-one}, C(11)H(16)O(8), the five-membered ring is essentially planar, the maximum deviation being 0.0151 (13) Å for the O atom. The six-membered ring adopts a chair conformation with puckering parameters Q = 0.581 (2) Å, θ = 9.0 (2)° and ϕ = 39.7 (13)°, and with all of the substituents of the glucoside unit having normal equatorial orientations. The crystal structure is stabilized by extensive O-H⋯O and C-H⋯O hydrogen bonding, resulting in a three-dimensional network.

Entities:  

Year:  2010        PMID: 21587499      PMCID: PMC2983359          DOI: 10.1107/S1600536810034847

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to ranunculin, see: Hill & van Heyningen (1951 ▶); Bai et al. (1996 ▶); Benn & Yelland (1968 ▶); Boll (1968 ▶); Camps et al. (1982 ▶); Fang et al. (1989 ▶). For chemical and spectrometric data for closely related, simple butenolides, see: Perry et al. (1996 ▶). For comparison bond distances, see: Allen et al. (1987 ▶). For puckering parameters, see: Cremer & Pople (1975 ▶).

Experimental

Crystal data

C11H16O8 M = 276.24 Monoclinic, a = 5.7944 (4) Å b = 6.9359 (3) Å c = 15.0491 (10) Å β = 97.895 (2)° V = 599.08 (6) Å3 Z = 2 Mo Kα radiation μ = 0.13 mm−1 T = 173 K 0.30 × 0.24 × 0.02 mm

Data collection

Nonius KappaCCD diffractometer with APEXII CCD Absorption correction: multi-scan (SORTAV; Blessing, 1997 ▶) T min = 0.961, T max = 0.997 1926 measured reflections 1133 independent reflections 1112 reflections with I > 2σ(I) R int = 0.018

Refinement

R[F 2 > 2σ(F 2)] = 0.026 wR(F 2) = 0.069 S = 1.04 1133 reflections 184 parameters 1 restraint H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.18 e Å−3 Δρmin = −0.16 e Å−3 Data collection: COLLECT (Hooft, 1998 ▶); cell refinement: DENZO (Otwinowski & Minor, 1997 ▶); data reduction: SCALEPACK (Otwinowski & Minor, 1997 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810034847/fl2315sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810034847/fl2315Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C11H16O8F(000) = 292
Mr = 276.24Dx = 1.531 Mg m3
Monoclinic, P21Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ybCell parameters from 1560 reflections
a = 5.7944 (4) Åθ = 1.0–30.0°
b = 6.9359 (3) ŵ = 0.13 mm1
c = 15.0491 (10) ÅT = 173 K
β = 97.895 (2)°Plate, colorless
V = 599.08 (6) Å30.30 × 0.24 × 0.02 mm
Z = 2
Nonius APEXII CCD [APEXII is a Bruker machine - is this a KappaCCD upgraded with an APEXII CCD?]diffractometer1133 independent reflections
Radiation source: fine-focus sealed tube1112 reflections with I > 2σ(I)
graphiteRint = 0.018
φ & ω scansθmax = 25.0°, θmin = 3.2°
Absorption correction: multi-scan (SORTAV; Blessing, 1997)h = −6→6
Tmin = 0.961, Tmax = 0.997k = −6→8
1926 measured reflectionsl = −17→17
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.026Hydrogen site location: difference Fourier map
wR(F2) = 0.069H atoms treated by a mixture of independent and constrained refinement
S = 1.04w = 1/[σ2(Fo2) + (0.040P)2 + 0.1617P] where P = (Fo2 + 2Fc2)/3
1133 reflections(Δ/σ)max = 0.002
184 parametersΔρmax = 0.18 e Å3
1 restraintΔρmin = −0.16 e Å3
Experimental. NMR data (400 MHz, 1H; 100 MHz 13C) for a solution in D2O containing sodium 3-trimethylsilylpropionate-2,3 - d4 as reference: δH (400 MHz) 7.77 (1H, dd, J = 1.5 and 5.8 Hz, H-4), 6.3 (1H, dd, J = 2.1 and 5.8 Hz, H-3), 5.47 (1H, m), 4.48 (1H, d, J = 7.9 Hz, H-1'), 4.30 (1H, dd, J = 3.2 and 12.2 Hz, H-6 A), 3.95 (1H, dd, J = 5.8 and 12.2 Hz, H-6B), 3.91 (1H, dd, J = 2.1 and 12.5 Hz, H-6A'), 3.72 (1H, dd, J = 5.8 and 12.5 Hz, H-6B'), 3.48 (1H, dd, dd, J = ca 9 Hz H-3'), 3.43 (1H, m, H-5'), 3.37 (1H, dd, J = ca 9 Hz, H=4'), and 3.25 (1H, dd, J = 7.9 and 9.2 Hz, H-2'); δC 179.2 s (C-2), 158.5 d (C-4), 124.7 d (C-3), 105.6 d (C-1'), 86.9 d (C-5), 78.7 d (C-5'), 78.3 d (C-3'), 75.6 d (C-2'), 72.2 d (C-4'), 71.7 t (C-6), 63.3 t (C-6').
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.9146 (3)−0.1112 (2)0.96815 (9)0.0225 (4)
O21.0618 (3)−0.0493 (3)1.11025 (10)0.0309 (4)
O30.4499 (2)0.0377 (2)0.79524 (9)0.0200 (3)
O40.5209 (2)0.3269 (2)0.73224 (9)0.0188 (3)
O50.1227 (3)−0.0568 (2)0.63887 (10)0.0241 (4)
H5O0.085 (5)−0.121 (5)0.6833 (19)0.036*
O6−0.0241 (2)0.2692 (2)0.53178 (10)0.0208 (4)
H6O−0.025 (5)0.336 (5)0.479 (2)0.031*
O70.3667 (3)0.5126 (3)0.50561 (9)0.0215 (3)
H7O0.259 (5)0.591 (5)0.4895 (18)0.032*
O80.8805 (3)0.6376 (3)0.72096 (10)0.0277 (4)
H8O0.893 (5)0.563 (5)0.769 (2)0.042*
C10.6798 (3)0.0332 (4)0.84401 (13)0.0216 (5)
H1A0.71910.16010.87210.026*
H1B0.79470.00360.80300.026*
C20.8918 (4)−0.0724 (3)1.05518 (13)0.0225 (5)
C30.6434 (4)−0.0666 (4)1.06406 (14)0.0252 (5)
H30.5794−0.04861.11830.030*
C40.5229 (4)−0.0912 (3)0.98301 (14)0.0243 (5)
H40.3578−0.08950.96990.029*
C50.6862 (4)−0.1216 (3)0.91570 (13)0.0204 (5)
H50.6609−0.25170.88740.025*
C60.4469 (4)0.1343 (3)0.71336 (13)0.0178 (4)
H60.55520.06940.67650.021*
C70.2004 (3)0.1338 (3)0.66293 (13)0.0176 (4)
H70.09060.19800.69940.021*
C80.2093 (3)0.2433 (3)0.57590 (13)0.0167 (4)
H80.29850.16520.53630.020*
C90.3238 (3)0.4413 (3)0.59065 (13)0.0172 (4)
H90.21640.53100.61700.021*
C100.5559 (3)0.4305 (3)0.65204 (13)0.0180 (4)
H100.67380.36220.62080.022*
C110.6423 (4)0.6302 (3)0.67948 (14)0.0218 (5)
H11A0.62480.71370.62560.026*
H11B0.54240.68400.72170.026*
U11U22U33U12U13U23
O10.0203 (7)0.0294 (9)0.0169 (7)0.0038 (6)−0.0002 (5)0.0024 (6)
O20.0327 (8)0.0329 (10)0.0233 (8)0.0036 (8)−0.0095 (7)−0.0014 (8)
O30.0212 (7)0.0242 (8)0.0137 (7)−0.0011 (7)−0.0005 (5)0.0038 (6)
O40.0226 (7)0.0190 (8)0.0143 (7)−0.0026 (6)0.0005 (5)−0.0001 (6)
O50.0317 (8)0.0223 (8)0.0172 (7)−0.0077 (7)−0.0007 (6)0.0020 (7)
O60.0177 (7)0.0259 (8)0.0174 (7)−0.0007 (6)−0.0027 (6)0.0030 (7)
O70.0218 (7)0.0257 (8)0.0172 (7)0.0016 (7)0.0036 (6)0.0063 (7)
O80.0262 (8)0.0330 (9)0.0227 (8)−0.0102 (8)−0.0010 (6)0.0034 (8)
C10.0200 (10)0.0262 (12)0.0175 (10)−0.0020 (10)−0.0010 (8)0.0041 (9)
C20.0302 (11)0.0188 (10)0.0175 (9)0.0063 (10)0.0000 (9)0.0026 (9)
C30.0306 (11)0.0257 (11)0.0201 (10)0.0037 (10)0.0064 (8)0.0025 (10)
C40.0235 (10)0.0234 (12)0.0264 (12)0.0004 (10)0.0044 (9)0.0071 (10)
C50.0217 (10)0.0214 (11)0.0168 (10)−0.0001 (9)−0.0023 (8)0.0016 (9)
C60.0216 (10)0.0179 (10)0.0138 (9)−0.0003 (9)0.0020 (7)0.0016 (9)
C70.0190 (10)0.0188 (10)0.0151 (9)−0.0014 (9)0.0025 (7)0.0003 (9)
C80.0152 (10)0.0207 (10)0.0135 (9)0.0003 (9)−0.0001 (8)−0.0008 (8)
C90.0185 (10)0.0191 (10)0.0143 (9)0.0010 (9)0.0038 (7)0.0010 (9)
C100.0180 (10)0.0216 (10)0.0147 (9)−0.0004 (10)0.0038 (8)0.0017 (9)
C110.0253 (11)0.0206 (11)0.0189 (10)−0.0016 (9)0.0004 (8)0.0006 (10)
O1—C21.361 (2)C2—C31.464 (3)
O1—C51.447 (2)C3—C41.331 (3)
O2—C21.208 (3)C3—H30.9500
O3—C61.401 (2)C4—C51.493 (3)
O3—C11.430 (2)C4—H40.9500
O4—C61.419 (3)C5—H51.0000
O4—C101.443 (2)C6—C71.523 (3)
O5—C71.427 (3)C6—H61.0000
O5—H5O0.86 (3)C7—C81.521 (3)
O6—C81.434 (2)C7—H71.0000
O6—H6O0.92 (3)C8—C91.528 (3)
O7—C91.425 (2)C8—H81.0000
O7—H7O0.84 (3)C9—C101.525 (2)
O8—C111.435 (3)C9—H91.0000
O8—H8O0.88 (3)C10—C111.511 (3)
C1—C51.519 (3)C10—H101.0000
C1—H1A0.9900C11—H11A0.9900
C1—H1B0.9900C11—H11B0.9900
C2—O1—C5109.40 (15)O4—C6—H6109.9
C6—O3—C1111.09 (15)C7—C6—H6109.9
C6—O4—C10112.00 (15)O5—C7—C8106.92 (16)
C7—O5—H5O113 (2)O5—C7—C6111.72 (17)
C8—O6—H6O110.7 (18)C8—C7—C6106.69 (16)
C9—O7—H7O105.7 (19)O5—C7—H7110.5
C11—O8—H8O107 (2)C8—C7—H7110.5
O3—C1—C5108.08 (17)C6—C7—H7110.5
O3—C1—H1A110.1O6—C8—C7108.63 (16)
C5—C1—H1A110.1O6—C8—C9108.56 (17)
O3—C1—H1B110.1C7—C8—C9112.90 (16)
C5—C1—H1B110.1O6—C8—H8108.9
H1A—C1—H1B108.4C7—C8—H8108.9
O2—C2—O1120.56 (19)C9—C8—H8108.9
O2—C2—C3130.8 (2)O7—C9—C10108.24 (15)
O1—C2—C3108.66 (17)O7—C9—C8107.89 (16)
C4—C3—C2108.1 (2)C10—C9—C8111.93 (17)
C4—C3—H3125.9O7—C9—H9109.6
C2—C3—H3125.9C10—C9—H9109.6
C3—C4—C5109.8 (2)C8—C9—H9109.6
C3—C4—H4125.1O4—C10—C11107.91 (16)
C5—C4—H4125.1O4—C10—C9108.49 (15)
O1—C5—C4103.91 (16)C11—C10—C9110.63 (17)
O1—C5—C1106.48 (16)O4—C10—H10109.9
C4—C5—C1115.19 (19)C11—C10—H10109.9
O1—C5—H5110.3C9—C10—H10109.9
C4—C5—H5110.3O8—C11—C10114.47 (18)
C1—C5—H5110.3O8—C11—H11A108.6
O3—C6—O4107.90 (15)C10—C11—H11A108.6
O3—C6—C7109.54 (16)O8—C11—H11B108.6
O4—C6—C7109.80 (16)C10—C11—H11B108.6
O3—C6—H6109.9H11A—C11—H11B107.6
C6—O3—C1—C5−162.86 (17)O3—C6—C7—C8179.11 (17)
C5—O1—C2—O2−176.8 (2)O4—C6—C7—C860.8 (2)
C5—O1—C2—C33.2 (2)O5—C7—C8—O668.0 (2)
O2—C2—C3—C4176.8 (3)C6—C7—C8—O6−172.30 (16)
O1—C2—C3—C4−3.3 (3)O5—C7—C8—C9−171.50 (16)
C2—C3—C4—C52.0 (3)C6—C7—C8—C9−51.8 (2)
C2—O1—C5—C4−2.0 (2)O6—C8—C9—O7−71.42 (19)
C2—O1—C5—C1120.06 (19)C7—C8—C9—O7168.07 (16)
C3—C4—C5—O1−0.1 (3)O6—C8—C9—C10169.60 (14)
C3—C4—C5—C1−116.2 (2)C7—C8—C9—C1049.1 (2)
O3—C1—C5—O1−175.41 (16)C6—O4—C10—C11−177.97 (16)
O3—C1—C5—C4−60.8 (2)C6—O4—C10—C962.1 (2)
C1—O3—C6—O4−61.2 (2)O7—C9—C10—O4−169.84 (18)
C1—O3—C6—C7179.26 (17)C8—C9—C10—O4−51.1 (2)
C10—O4—C6—O3171.64 (15)O7—C9—C10—C1172.0 (2)
C10—O4—C6—C7−69.02 (19)C8—C9—C10—C11−169.25 (17)
O3—C6—C7—O5−64.4 (2)O4—C10—C11—O874.2 (2)
O4—C6—C7—O5177.31 (17)C9—C10—C11—O8−167.27 (16)
D—H···AD—HH···AD···AD—H···A
O5—H5O···O8i0.86 (3)2.17 (3)2.910 (2)144 (3)
O6—H6O···O5ii0.92 (3)1.94 (3)2.824 (2)162 (3)
O7—H7O···O6ii0.84 (3)1.84 (3)2.668 (2)173 (3)
O8—H8O···O2iii0.88 (3)1.96 (3)2.830 (2)167 (3)
C3—H3···O4iv0.952.553.413 (3)151
C4—H4···O1v0.952.573.504 (3)168
C8—H8···O7vi1.002.373.306 (3)155
C1—H1A···O2iii0.992.383.289 (3)153
C10—H10···O6vii1.002.433.415 (3)167
O6—H6O···O70.92 (3)2.56 (3)2.894 (2)102 (2)
C11—H11A···O70.992.592.986 (3)104
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O5—H5O⋯O8i0.86 (3)2.17 (3)2.910 (2)144 (3)
O6—H6O⋯O5ii0.92 (3)1.94 (3)2.824 (2)162 (3)
O7—H7O⋯O6ii0.84 (3)1.84 (3)2.668 (2)173 (3)
O8—H8O⋯O2iii0.88 (3)1.96 (3)2.830 (2)167 (3)
O6—H6O⋯O70.92 (3)2.56 (3)2.894 (2)102 (2)

Symmetry codes: (i) ; (ii) ; (iii) .

  4 in total

1.  [Studies of the total synthesis of (-)-ranunculin].

Authors:  Z Fang; J Zhou; L Huang
Journal:  Yao Xue Xue Bao       Date:  1989

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  Ranunculin; the precursor of the vesicant substance of the buttercup.

Authors:  R HILL; R VAN HEYNINGEN
Journal:  Biochem J       Date:  1951-08       Impact factor: 3.857

4.  The glycosidic precursor of (Z)-5-ethylidene-2(5H)-furanone in Halocarpus biformis juvenile foliage.

Authors:  N B Perry; M H Benn; L M Foster; A Routledge; R T Weavers
Journal:  Phytochemistry       Date:  1996-05       Impact factor: 4.072

  4 in total

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