| Literature DB >> 21587499 |
Michael Benn1, Lois Jean Yelland, Masood Parvez.
Abstract
In the title mol-ecule {systematic name: (5S)-5-[(β-d-gluco-pyranos-yloxy)meth-yl]furan-2(5H)-one}, C(11)H(16)O(8), the five-membered ring is essentially planar, the maximum deviation being 0.0151 (13) Å for the O atom. The six-membered ring adopts a chair conformation with puckering parameters Q = 0.581 (2) Å, θ = 9.0 (2)° and ϕ = 39.7 (13)°, and with all of the substituents of the glucoside unit having normal equatorial orientations. The crystal structure is stabilized by extensive O-H⋯O and C-H⋯O hydrogen bonding, resulting in a three-dimensional network.Entities:
Year: 2010 PMID: 21587499 PMCID: PMC2983359 DOI: 10.1107/S1600536810034847
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C11H16O8 | |
| Monoclinic, | Mo |
| Hall symbol: P 2yb | Cell parameters from 1560 reflections |
| θ = 1.0–30.0° | |
| µ = 0.13 mm−1 | |
| β = 97.895 (2)° | Plate, colorless |
| 0.30 × 0.24 × 0.02 mm | |
| Nonius APEXII CCD [APEXII is a Bruker machine - is this a KappaCCD upgraded with an APEXII CCD?]diffractometer | 1133 independent reflections |
| Radiation source: fine-focus sealed tube | 1112 reflections with |
| graphite | |
| φ & ω scans | θmax = 25.0°, θmin = 3.2° |
| Absorption correction: multi-scan ( | |
| 1926 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: difference Fourier map | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 1133 reflections | (Δ/σ)max = 0.002 |
| 184 parameters | Δρmax = 0.18 e Å−3 |
| 1 restraint | Δρmin = −0.16 e Å−3 |
| Experimental. NMR data (400 MHz, 1H; 100 MHz 13C) for a solution in D2O containing
sodium 3-trimethylsilylpropionate-2,3 - d4 as reference: δH (400 MHz)
7.77 (1 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| O1 | 0.9146 (3) | −0.1112 (2) | 0.96815 (9) | 0.0225 (4) | |
| O2 | 1.0618 (3) | −0.0493 (3) | 1.11025 (10) | 0.0309 (4) | |
| O3 | 0.4499 (2) | 0.0377 (2) | 0.79524 (9) | 0.0200 (3) | |
| O4 | 0.5209 (2) | 0.3269 (2) | 0.73224 (9) | 0.0188 (3) | |
| O5 | 0.1227 (3) | −0.0568 (2) | 0.63887 (10) | 0.0241 (4) | |
| H5O | 0.085 (5) | −0.121 (5) | 0.6833 (19) | 0.036* | |
| O6 | −0.0241 (2) | 0.2692 (2) | 0.53178 (10) | 0.0208 (4) | |
| H6O | −0.025 (5) | 0.336 (5) | 0.479 (2) | 0.031* | |
| O7 | 0.3667 (3) | 0.5126 (3) | 0.50561 (9) | 0.0215 (3) | |
| H7O | 0.259 (5) | 0.591 (5) | 0.4895 (18) | 0.032* | |
| O8 | 0.8805 (3) | 0.6376 (3) | 0.72096 (10) | 0.0277 (4) | |
| H8O | 0.893 (5) | 0.563 (5) | 0.769 (2) | 0.042* | |
| C1 | 0.6798 (3) | 0.0332 (4) | 0.84401 (13) | 0.0216 (5) | |
| H1A | 0.7191 | 0.1601 | 0.8721 | 0.026* | |
| H1B | 0.7947 | 0.0036 | 0.8030 | 0.026* | |
| C2 | 0.8918 (4) | −0.0724 (3) | 1.05518 (13) | 0.0225 (5) | |
| C3 | 0.6434 (4) | −0.0666 (4) | 1.06406 (14) | 0.0252 (5) | |
| H3 | 0.5794 | −0.0486 | 1.1183 | 0.030* | |
| C4 | 0.5229 (4) | −0.0912 (3) | 0.98301 (14) | 0.0243 (5) | |
| H4 | 0.3578 | −0.0895 | 0.9699 | 0.029* | |
| C5 | 0.6862 (4) | −0.1216 (3) | 0.91570 (13) | 0.0204 (5) | |
| H5 | 0.6609 | −0.2517 | 0.8874 | 0.025* | |
| C6 | 0.4469 (4) | 0.1343 (3) | 0.71336 (13) | 0.0178 (4) | |
| H6 | 0.5552 | 0.0694 | 0.6765 | 0.021* | |
| C7 | 0.2004 (3) | 0.1338 (3) | 0.66293 (13) | 0.0176 (4) | |
| H7 | 0.0906 | 0.1980 | 0.6994 | 0.021* | |
| C8 | 0.2093 (3) | 0.2433 (3) | 0.57590 (13) | 0.0167 (4) | |
| H8 | 0.2985 | 0.1652 | 0.5363 | 0.020* | |
| C9 | 0.3238 (3) | 0.4413 (3) | 0.59065 (13) | 0.0172 (4) | |
| H9 | 0.2164 | 0.5310 | 0.6170 | 0.021* | |
| C10 | 0.5559 (3) | 0.4305 (3) | 0.65204 (13) | 0.0180 (4) | |
| H10 | 0.6738 | 0.3622 | 0.6208 | 0.022* | |
| C11 | 0.6423 (4) | 0.6302 (3) | 0.67948 (14) | 0.0218 (5) | |
| H11A | 0.6248 | 0.7137 | 0.6256 | 0.026* | |
| H11B | 0.5424 | 0.6840 | 0.7217 | 0.026* |
| O1 | 0.0203 (7) | 0.0294 (9) | 0.0169 (7) | 0.0038 (6) | −0.0002 (5) | 0.0024 (6) |
| O2 | 0.0327 (8) | 0.0329 (10) | 0.0233 (8) | 0.0036 (8) | −0.0095 (7) | −0.0014 (8) |
| O3 | 0.0212 (7) | 0.0242 (8) | 0.0137 (7) | −0.0011 (7) | −0.0005 (5) | 0.0038 (6) |
| O4 | 0.0226 (7) | 0.0190 (8) | 0.0143 (7) | −0.0026 (6) | 0.0005 (5) | −0.0001 (6) |
| O5 | 0.0317 (8) | 0.0223 (8) | 0.0172 (7) | −0.0077 (7) | −0.0007 (6) | 0.0020 (7) |
| O6 | 0.0177 (7) | 0.0259 (8) | 0.0174 (7) | −0.0007 (6) | −0.0027 (6) | 0.0030 (7) |
| O7 | 0.0218 (7) | 0.0257 (8) | 0.0172 (7) | 0.0016 (7) | 0.0036 (6) | 0.0063 (7) |
| O8 | 0.0262 (8) | 0.0330 (9) | 0.0227 (8) | −0.0102 (8) | −0.0010 (6) | 0.0034 (8) |
| C1 | 0.0200 (10) | 0.0262 (12) | 0.0175 (10) | −0.0020 (10) | −0.0010 (8) | 0.0041 (9) |
| C2 | 0.0302 (11) | 0.0188 (10) | 0.0175 (9) | 0.0063 (10) | 0.0000 (9) | 0.0026 (9) |
| C3 | 0.0306 (11) | 0.0257 (11) | 0.0201 (10) | 0.0037 (10) | 0.0064 (8) | 0.0025 (10) |
| C4 | 0.0235 (10) | 0.0234 (12) | 0.0264 (12) | 0.0004 (10) | 0.0044 (9) | 0.0071 (10) |
| C5 | 0.0217 (10) | 0.0214 (11) | 0.0168 (10) | −0.0001 (9) | −0.0023 (8) | 0.0016 (9) |
| C6 | 0.0216 (10) | 0.0179 (10) | 0.0138 (9) | −0.0003 (9) | 0.0020 (7) | 0.0016 (9) |
| C7 | 0.0190 (10) | 0.0188 (10) | 0.0151 (9) | −0.0014 (9) | 0.0025 (7) | 0.0003 (9) |
| C8 | 0.0152 (10) | 0.0207 (10) | 0.0135 (9) | 0.0003 (9) | −0.0001 (8) | −0.0008 (8) |
| C9 | 0.0185 (10) | 0.0191 (10) | 0.0143 (9) | 0.0010 (9) | 0.0038 (7) | 0.0010 (9) |
| C10 | 0.0180 (10) | 0.0216 (10) | 0.0147 (9) | −0.0004 (10) | 0.0038 (8) | 0.0017 (9) |
| C11 | 0.0253 (11) | 0.0206 (11) | 0.0189 (10) | −0.0016 (9) | 0.0004 (8) | 0.0006 (10) |
| O1—C2 | 1.361 (2) | C2—C3 | 1.464 (3) |
| O1—C5 | 1.447 (2) | C3—C4 | 1.331 (3) |
| O2—C2 | 1.208 (3) | C3—H3 | 0.9500 |
| O3—C6 | 1.401 (2) | C4—C5 | 1.493 (3) |
| O3—C1 | 1.430 (2) | C4—H4 | 0.9500 |
| O4—C6 | 1.419 (3) | C5—H5 | 1.0000 |
| O4—C10 | 1.443 (2) | C6—C7 | 1.523 (3) |
| O5—C7 | 1.427 (3) | C6—H6 | 1.0000 |
| O5—H5O | 0.86 (3) | C7—C8 | 1.521 (3) |
| O6—C8 | 1.434 (2) | C7—H7 | 1.0000 |
| O6—H6O | 0.92 (3) | C8—C9 | 1.528 (3) |
| O7—C9 | 1.425 (2) | C8—H8 | 1.0000 |
| O7—H7O | 0.84 (3) | C9—C10 | 1.525 (2) |
| O8—C11 | 1.435 (3) | C9—H9 | 1.0000 |
| O8—H8O | 0.88 (3) | C10—C11 | 1.511 (3) |
| C1—C5 | 1.519 (3) | C10—H10 | 1.0000 |
| C1—H1A | 0.9900 | C11—H11A | 0.9900 |
| C1—H1B | 0.9900 | C11—H11B | 0.9900 |
| C2—O1—C5 | 109.40 (15) | O4—C6—H6 | 109.9 |
| C6—O3—C1 | 111.09 (15) | C7—C6—H6 | 109.9 |
| C6—O4—C10 | 112.00 (15) | O5—C7—C8 | 106.92 (16) |
| C7—O5—H5O | 113 (2) | O5—C7—C6 | 111.72 (17) |
| C8—O6—H6O | 110.7 (18) | C8—C7—C6 | 106.69 (16) |
| C9—O7—H7O | 105.7 (19) | O5—C7—H7 | 110.5 |
| C11—O8—H8O | 107 (2) | C8—C7—H7 | 110.5 |
| O3—C1—C5 | 108.08 (17) | C6—C7—H7 | 110.5 |
| O3—C1—H1A | 110.1 | O6—C8—C7 | 108.63 (16) |
| C5—C1—H1A | 110.1 | O6—C8—C9 | 108.56 (17) |
| O3—C1—H1B | 110.1 | C7—C8—C9 | 112.90 (16) |
| C5—C1—H1B | 110.1 | O6—C8—H8 | 108.9 |
| H1A—C1—H1B | 108.4 | C7—C8—H8 | 108.9 |
| O2—C2—O1 | 120.56 (19) | C9—C8—H8 | 108.9 |
| O2—C2—C3 | 130.8 (2) | O7—C9—C10 | 108.24 (15) |
| O1—C2—C3 | 108.66 (17) | O7—C9—C8 | 107.89 (16) |
| C4—C3—C2 | 108.1 (2) | C10—C9—C8 | 111.93 (17) |
| C4—C3—H3 | 125.9 | O7—C9—H9 | 109.6 |
| C2—C3—H3 | 125.9 | C10—C9—H9 | 109.6 |
| C3—C4—C5 | 109.8 (2) | C8—C9—H9 | 109.6 |
| C3—C4—H4 | 125.1 | O4—C10—C11 | 107.91 (16) |
| C5—C4—H4 | 125.1 | O4—C10—C9 | 108.49 (15) |
| O1—C5—C4 | 103.91 (16) | C11—C10—C9 | 110.63 (17) |
| O1—C5—C1 | 106.48 (16) | O4—C10—H10 | 109.9 |
| C4—C5—C1 | 115.19 (19) | C11—C10—H10 | 109.9 |
| O1—C5—H5 | 110.3 | C9—C10—H10 | 109.9 |
| C4—C5—H5 | 110.3 | O8—C11—C10 | 114.47 (18) |
| C1—C5—H5 | 110.3 | O8—C11—H11A | 108.6 |
| O3—C6—O4 | 107.90 (15) | C10—C11—H11A | 108.6 |
| O3—C6—C7 | 109.54 (16) | O8—C11—H11B | 108.6 |
| O4—C6—C7 | 109.80 (16) | C10—C11—H11B | 108.6 |
| O3—C6—H6 | 109.9 | H11A—C11—H11B | 107.6 |
| C6—O3—C1—C5 | −162.86 (17) | O3—C6—C7—C8 | 179.11 (17) |
| C5—O1—C2—O2 | −176.8 (2) | O4—C6—C7—C8 | 60.8 (2) |
| C5—O1—C2—C3 | 3.2 (2) | O5—C7—C8—O6 | 68.0 (2) |
| O2—C2—C3—C4 | 176.8 (3) | C6—C7—C8—O6 | −172.30 (16) |
| O1—C2—C3—C4 | −3.3 (3) | O5—C7—C8—C9 | −171.50 (16) |
| C2—C3—C4—C5 | 2.0 (3) | C6—C7—C8—C9 | −51.8 (2) |
| C2—O1—C5—C4 | −2.0 (2) | O6—C8—C9—O7 | −71.42 (19) |
| C2—O1—C5—C1 | 120.06 (19) | C7—C8—C9—O7 | 168.07 (16) |
| C3—C4—C5—O1 | −0.1 (3) | O6—C8—C9—C10 | 169.60 (14) |
| C3—C4—C5—C1 | −116.2 (2) | C7—C8—C9—C10 | 49.1 (2) |
| O3—C1—C5—O1 | −175.41 (16) | C6—O4—C10—C11 | −177.97 (16) |
| O3—C1—C5—C4 | −60.8 (2) | C6—O4—C10—C9 | 62.1 (2) |
| C1—O3—C6—O4 | −61.2 (2) | O7—C9—C10—O4 | −169.84 (18) |
| C1—O3—C6—C7 | 179.26 (17) | C8—C9—C10—O4 | −51.1 (2) |
| C10—O4—C6—O3 | 171.64 (15) | O7—C9—C10—C11 | 72.0 (2) |
| C10—O4—C6—C7 | −69.02 (19) | C8—C9—C10—C11 | −169.25 (17) |
| O3—C6—C7—O5 | −64.4 (2) | O4—C10—C11—O8 | 74.2 (2) |
| O4—C6—C7—O5 | 177.31 (17) | C9—C10—C11—O8 | −167.27 (16) |
| H··· | ||||
| O5—H5O···O8i | 0.86 (3) | 2.17 (3) | 2.910 (2) | 144 (3) |
| O6—H6O···O5ii | 0.92 (3) | 1.94 (3) | 2.824 (2) | 162 (3) |
| O7—H7O···O6ii | 0.84 (3) | 1.84 (3) | 2.668 (2) | 173 (3) |
| O8—H8O···O2iii | 0.88 (3) | 1.96 (3) | 2.830 (2) | 167 (3) |
| C3—H3···O4iv | 0.95 | 2.55 | 3.413 (3) | 151 |
| C4—H4···O1v | 0.95 | 2.57 | 3.504 (3) | 168 |
| C8—H8···O7vi | 1.00 | 2.37 | 3.306 (3) | 155 |
| C1—H1A···O2iii | 0.99 | 2.38 | 3.289 (3) | 153 |
| C10—H10···O6vii | 1.00 | 2.43 | 3.415 (3) | 167 |
| O6—H6O···O7 | 0.92 (3) | 2.56 (3) | 2.894 (2) | 102 (2) |
| C11—H11A···O7 | 0.99 | 2.59 | 2.986 (3) | 104 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| O5—H5 | 0.86 (3) | 2.17 (3) | 2.910 (2) | 144 (3) |
| O6—H6 | 0.92 (3) | 1.94 (3) | 2.824 (2) | 162 (3) |
| O7—H7 | 0.84 (3) | 1.84 (3) | 2.668 (2) | 173 (3) |
| O8—H8 | 0.88 (3) | 1.96 (3) | 2.830 (2) | 167 (3) |
| O6—H6 | 0.92 (3) | 2.56 (3) | 2.894 (2) | 102 (2) |
Symmetry codes: (i) ; (ii) ; (iii) .