Literature DB >> 21587473

3-[2-(1,3-Benzothia-zol-2-ylsulfan-yl)eth-yl]-1,3-oxazolidin-2-one.

Cong-Hui Ma, Xiao-Feng Li, Yan An, Yong-Hong Wen.   

Abstract

The title compound, C(12)H(12)N(2)S(2)O(2), consists of a benzothia-zole group and a oxazolidin-1-one linked via a flexible ethane-1,2-diyl spacer. The benzothiazole group and the oxazolidine ring are each almost planar [with maximum deviations of 0.007 (2) and 0.044 (3) Å, respectively] and make a dihedral angle of 9.35 (10)°. In the crystal structure, adjacent mol-ecules were connected through C-H⋯O and C-H⋯N hydrogen bonds, and further extended into a three-dimensional network structure through inter-molecular aromatic π-π stacking inter-actions in which the centroid-centroid distance is 3.590 (1) Å.

Entities:  

Year:  2010        PMID: 21587473      PMCID: PMC2983132          DOI: 10.1107/S1600536810034264

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to the applications of 2-oxazolidinones, see: Ippolito et al. (2008 ▶); Mullera et al. (1999 ▶).

Experimental

Crystal data

C12H12N2O2S2 M = 280.36 Triclinic, a = 6.5804 (4) Å b = 7.8331 (5) Å c = 12.5890 (7) Å α = 99.864 (5)° β = 97.715 (5)° γ = 97.011 (5)° V = 626.49 (7) Å3 Z = 2 Cu Kα radiation μ = 3.83 mm−1 T = 293 K 0.16 × 0.14 × 0.10 mm

Data collection

Oxford Diffraction Xcalibur Sapphire3 diffractometer Absorption correction: multi-scan (CrysAlis RED; Oxford Diffraction, 2005 ▶) T min = 0.572, T max = 1.000 4029 measured reflections 2396 independent reflections 2081 reflections with I > 2σ(I) R int = 0.020

Refinement

R[F 2 > 2σ(F 2)] = 0.039 wR(F 2) = 0.111 S = 1.05 2396 reflections 163 parameters H-atom parameters constrained Δρmax = 0.25 e Å−3 Δρmin = −0.38 e Å−3 Data collection: CrysAlis CCD (Oxford Diffraction, 2005 ▶); cell refinement: CrysAlis CCD; data reduction: CrysAlis RED (Oxford Diffraction, 2005 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: OLEX2 (Dolomanov et al., 2009 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536810034264/bv2154sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810034264/bv2154Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C12H12N2O2S2Z = 2
Mr = 280.36F(000) = 292
Triclinic, P1Dx = 1.486 Mg m3
Hall symbol: -P 1Cu Kα radiation, λ = 1.54184 Å
a = 6.5804 (4) ÅCell parameters from 2669 reflections
b = 7.8331 (5) Åθ = 3.6–72.2°
c = 12.5890 (7) ŵ = 3.83 mm1
α = 99.864 (5)°T = 293 K
β = 97.715 (5)°Rhombus, colourless
γ = 97.011 (5)°0.16 × 0.14 × 0.10 mm
V = 626.49 (7) Å3
Oxford Diffraction Xcalibur Sapphire3 diffractometer2396 independent reflections
Radiation source: Enhance (Cu) X-ray Source2081 reflections with I > 2σ(I)
graphiteRint = 0.020
Detector resolution: 16.0355 pixels mm-1θmax = 72.4°, θmin = 3.6°
ω scansh = −7→5
Absorption correction: multi-scan (CrysAlis RED; Oxford Diffraction, 2005)k = −9→8
Tmin = 0.572, Tmax = 1.000l = −15→15
4029 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.039Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.111H-atom parameters constrained
S = 1.05w = 1/[σ2(Fo2) + (0.081P)2 + 0.008P] where P = (Fo2 + 2Fc2)/3
2396 reflections(Δ/σ)max < 0.001
163 parametersΔρmax = 0.25 e Å3
0 restraintsΔρmin = −0.38 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S10.35142 (6)0.68528 (6)0.47728 (3)0.04252 (17)
S2−0.03291 (7)0.79117 (6)0.57333 (4)0.04677 (17)
O10.2992 (3)1.2011 (2)0.90981 (13)0.0693 (5)
O20.6287 (3)1.1616 (2)0.95686 (12)0.0661 (4)
N1−0.0218 (2)0.6472 (2)0.36963 (12)0.0407 (3)
N20.4734 (2)1.0512 (2)0.78894 (12)0.0465 (4)
C10.1020 (3)0.5814 (2)0.29599 (14)0.0370 (4)
C20.0334 (3)0.5093 (3)0.18583 (15)0.0466 (4)
H2−0.10480.50290.15560.056*
C30.1746 (3)0.4474 (3)0.12252 (15)0.0500 (4)
H30.13010.39820.04920.060*
C40.3836 (3)0.4578 (2)0.16706 (16)0.0474 (4)
H40.47570.41520.12280.057*
C50.4548 (3)0.5301 (2)0.27549 (15)0.0424 (4)
H50.59370.53820.30500.051*
C60.3115 (3)0.5908 (2)0.33941 (14)0.0358 (3)
C70.0866 (3)0.7046 (2)0.46521 (14)0.0370 (4)
C80.1759 (3)0.8424 (2)0.68809 (14)0.0441 (4)
H8A0.11740.84410.75490.053*
H8B0.26210.75030.68240.053*
C90.3115 (3)1.0177 (2)0.69552 (15)0.0474 (4)
H9A0.37291.01660.62960.057*
H9B0.22671.11090.70140.057*
C100.6791 (3)1.0058 (3)0.78669 (19)0.0533 (5)
H10A0.75201.06680.73890.064*
H10B0.67550.88060.76420.064*
C110.7754 (4)1.0685 (4)0.9048 (2)0.0683 (6)
H11A0.80230.96980.93900.082*
H11B0.90541.14530.91060.082*
C120.4514 (3)1.1428 (2)0.88637 (15)0.0480 (4)
U11U22U33U12U13U23
S10.0296 (2)0.0517 (3)0.0405 (3)0.00659 (18)−0.00164 (17)−0.00180 (18)
S20.0372 (3)0.0556 (3)0.0451 (3)0.0092 (2)0.00809 (19)−0.0001 (2)
O10.0739 (11)0.0767 (11)0.0617 (9)0.0256 (9)0.0276 (8)0.0019 (8)
O20.0723 (10)0.0682 (10)0.0476 (8)0.0023 (8)−0.0068 (7)0.0007 (7)
N10.0317 (7)0.0481 (8)0.0408 (8)0.0079 (6)0.0018 (6)0.0062 (6)
N20.0426 (9)0.0500 (8)0.0431 (8)0.0105 (7)0.0052 (7)−0.0030 (7)
C10.0337 (8)0.0381 (8)0.0395 (8)0.0059 (6)0.0031 (7)0.0097 (7)
C20.0420 (10)0.0542 (10)0.0397 (9)0.0055 (8)−0.0022 (7)0.0063 (8)
C30.0567 (11)0.0524 (10)0.0382 (9)0.0068 (9)0.0046 (8)0.0043 (8)
C40.0509 (11)0.0448 (9)0.0485 (10)0.0101 (8)0.0163 (8)0.0055 (8)
C50.0355 (9)0.0411 (9)0.0497 (10)0.0065 (7)0.0073 (7)0.0055 (7)
C60.0325 (8)0.0348 (7)0.0380 (8)0.0026 (6)0.0021 (6)0.0055 (6)
C70.0304 (8)0.0379 (8)0.0412 (9)0.0049 (6)0.0027 (7)0.0055 (7)
C80.0489 (10)0.0438 (9)0.0393 (9)0.0074 (8)0.0074 (8)0.0061 (7)
C90.0554 (11)0.0409 (9)0.0434 (9)0.0079 (8)0.0032 (8)0.0044 (7)
C100.0478 (11)0.0488 (10)0.0680 (13)0.0128 (8)0.0168 (10)0.0146 (9)
C110.0440 (12)0.0807 (16)0.0786 (16)0.0031 (11)−0.0035 (11)0.0250 (13)
C120.0544 (11)0.0448 (9)0.0431 (10)0.0062 (8)0.0100 (8)0.0028 (8)
S1—C61.7376 (17)C3—C41.401 (3)
S1—C71.7564 (17)C3—H30.9300
S2—C71.7412 (17)C4—C51.379 (3)
S2—C81.8083 (19)C4—H40.9300
O1—C121.202 (2)C5—C61.394 (2)
O2—C121.343 (2)C5—H50.9300
O2—C111.439 (3)C8—C91.525 (3)
N1—C71.290 (2)C8—H8A0.9700
N1—C11.389 (2)C8—H8B0.9700
N2—C121.346 (2)C9—H9A0.9700
N2—C91.441 (2)C9—H9B0.9700
N2—C101.444 (3)C10—C111.509 (3)
C1—C21.396 (2)C10—H10A0.9700
C1—C61.401 (2)C10—H10B0.9700
C2—C31.382 (3)C11—H11A0.9700
C2—H20.9300C11—H11B0.9700
C6—S1—C788.66 (8)C9—C8—S2113.55 (13)
C7—S2—C8103.28 (8)C9—C8—H8A108.9
C12—O2—C11109.30 (16)S2—C8—H8A108.9
C7—N1—C1110.61 (14)C9—C8—H8B108.9
C12—N2—C9122.28 (17)S2—C8—H8B108.9
C12—N2—C10112.88 (17)H8A—C8—H8B107.7
C9—N2—C10124.61 (16)N2—C9—C8110.74 (16)
N1—C1—C2125.28 (16)N2—C9—H9A109.5
N1—C1—C6115.23 (15)C8—C9—H9A109.5
C2—C1—C6119.48 (17)N2—C9—H9B109.5
C3—C2—C1118.82 (18)C8—C9—H9B109.5
C3—C2—H2120.6H9A—C9—H9B108.1
C1—C2—H2120.6N2—C10—C11100.92 (18)
C2—C3—C4121.05 (18)N2—C10—H10A111.6
C2—C3—H3119.5C11—C10—H10A111.6
C4—C3—H3119.5N2—C10—H10B111.6
C5—C4—C3120.99 (18)C11—C10—H10B111.6
C5—C4—H4119.5H10A—C10—H10B109.4
C3—C4—H4119.5O2—C11—C10106.53 (17)
C4—C5—C6117.81 (17)O2—C11—H11A110.4
C4—C5—H5121.1C10—C11—H11A110.4
C6—C5—H5121.1O2—C11—H11B110.4
C5—C6—C1121.83 (16)C10—C11—H11B110.4
C5—C6—S1128.83 (14)H11A—C11—H11B108.6
C1—C6—S1109.34 (13)O1—C12—O2123.44 (19)
N1—C7—S2119.85 (13)O1—C12—N2126.8 (2)
N1—C7—S1116.15 (13)O2—C12—N2109.76 (17)
S2—C7—S1123.99 (10)
C7—N1—C1—C2179.93 (17)C8—S2—C7—S1−1.39 (13)
C7—N1—C1—C60.0 (2)C6—S1—C7—N10.16 (14)
N1—C1—C2—C3−179.38 (17)C6—S1—C7—S2179.01 (12)
C6—C1—C2—C30.5 (3)C7—S2—C8—C982.41 (15)
C1—C2—C3—C4−0.6 (3)C12—N2—C9—C8−92.9 (2)
C2—C3—C4—C50.0 (3)C10—N2—C9—C892.9 (2)
C3—C4—C5—C60.7 (3)S2—C8—C9—N2179.53 (12)
C4—C5—C6—C1−0.7 (3)C12—N2—C10—C116.1 (2)
C4—C5—C6—S1179.22 (14)C9—N2—C10—C11−179.26 (19)
N1—C1—C6—C5−179.97 (15)C12—O2—C11—C107.0 (3)
C2—C1—C6—C50.1 (3)N2—C10—C11—O2−7.6 (2)
N1—C1—C6—S10.08 (19)C11—O2—C12—O1176.9 (2)
C2—C1—C6—S1−179.82 (14)C11—O2—C12—N2−3.2 (2)
C7—S1—C6—C5179.93 (17)C9—N2—C12—O13.0 (3)
C7—S1—C6—C1−0.13 (13)C10—N2—C12—O1177.8 (2)
C1—N1—C7—S2−179.04 (12)C9—N2—C12—O2−176.91 (16)
C1—N1—C7—S1−0.14 (19)C10—N2—C12—O2−2.1 (2)
C8—S2—C7—N1177.42 (14)
D—H···AD—HH···AD···AD—H···A
C11—H11B···O1i0.972.583.466 (3)152
C3—H3···O1ii0.932.593.282 (2)132
C5—H5···N1i0.932.543.445 (2)163
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C11—H11B⋯O1i0.972.583.466 (3)152
C3—H3⋯O1ii0.932.593.282 (2)132
C5—H5⋯N1i0.932.543.445 (2)163

Symmetry codes: (i) ; (ii) .

  3 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

Review 2.  Oxazolidinones: a novel class of antibiotics.

Authors:  M Müller; K L Schimz
Journal:  Cell Mol Life Sci       Date:  1999-10-15       Impact factor: 9.261

3.  Crystal structure of the oxazolidinone antibiotic linezolid bound to the 50S ribosomal subunit.

Authors:  Joseph A Ippolito; Zoltan F Kanyo; Deping Wang; Francois J Franceschi; Peter B Moore; Thomas A Steitz; Erin M Duffy
Journal:  J Med Chem       Date:  2008-06-26       Impact factor: 7.446

  3 in total

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