Literature DB >> 21587448

4-Cyano-1-(4-nitro-benz-yl)pyridinium bis-(2-thioxo-1,3-dithiole-4,5-dithiol-ato-κS,S)nickelate(III).

Kai-Hui Li1, Qing-Duo Lei, Chong-Zhen Mei.   

Abstract

In the title salt, (C(13)H(10)N(3)O(2))[Ni(C(3)S(5))(2)], the Ni(III) cation is S,S'-chelated by two 2-thioxo-1,3-dithiole-4,5-dithiol-ate anions in a distorted square-planar geometry. The complex anion is approximately planar with a maximum deviation of 0.097 (1) Å. In the 1-(4-nitro-benz-yl)-4-cyano-pyridinium cation, the pyridine ring is twisted at a dihedral angle of 73.84 (16)° with respect to the benzene ring. π-π stacking is observed between nearly parallel [dihedral angle = 4.71 (7)°] dithiole and benzene rings, the centroid-centroid distance being 3.791 (2) Å.

Entities:  

Year:  2010        PMID: 21587448      PMCID: PMC2983398          DOI: 10.1107/S1600536810037426

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to and applications of dithiol­ate metal complexes, see: Akutagawa & Nakamura (2000 ▶); Cassoux (1999 ▶). For the structure of a complex with a 2-thioxo-1,3-dithiole-4,5-dithiol­ate ligand, see: Zang et al. (2006 ▶). For weak inter­molecular inter­actions, see: Egli & Sarkhel (2007 ▶); Tian et al. (2007 ▶); Cundari et al. (2010 ▶).

Experimental

Crystal data

(C13H10N3O2)[Ni(C3S5)2] M = 691.61 Monoclinic, a = 8.4896 (17) Å b = 25.789 (5) Å c = 12.043 (3) Å β = 106.181 (3)° V = 2532.3 (9) Å3 Z = 4 Mo Kα radiation μ = 1.62 mm−1 T = 296 K 0.20 × 0.17 × 0.15 mm

Data collection

Bruker SMART APEXII CCD area detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2005 ▶) T min = 0.738, T max = 0.794 12415 measured reflections 4423 independent reflections 3343 reflections with I > 2σ(I) R int = 0.043

Refinement

R[F 2 > 2σ(F 2)] = 0.040 wR(F 2) = 0.090 S = 1.02 4423 reflections 316 parameters H-atom parameters constrained Δρmax = 0.57 e Å−3 Δρmin = −0.26 e Å−3 Data collection: APEX2 (Bruker, 2005 ▶); cell refinement: SAINT (Bruker, 2005 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536810037426/xu5018sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810037426/xu5018Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
(C13H10N3O2)[Ni(C3S5)2]F(000) = 1396
Mr = 691.61Dx = 1.814 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 947 reflections
a = 8.4896 (17) Åθ = 2.4–24.3°
b = 25.789 (5) ŵ = 1.62 mm1
c = 12.043 (3) ÅT = 296 K
β = 106.181 (3)°Block, black
V = 2532.3 (9) Å30.20 × 0.17 × 0.15 mm
Z = 4
Bruker SMART APEXII CCD area detector diffractometer4423 independent reflections
Radiation source: fine-focus sealed tube3343 reflections with I > 2σ(I)
graphiteRint = 0.043
φ and ω scansθmax = 25.0°, θmin = 1.9°
Absorption correction: multi-scan (SADABS; Bruker, 2005)h = −9→10
Tmin = 0.738, Tmax = 0.794k = −30→21
12415 measured reflectionsl = −14→14
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.040Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.090H-atom parameters constrained
S = 1.02w = 1/[σ2(Fo2) + (0.0387P)2 + 0.150P] where P = (Fo2 + 2Fc2)/3
4423 reflections(Δ/σ)max = 0.001
316 parametersΔρmax = 0.57 e Å3
0 restraintsΔρmin = −0.26 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Ni10.12504 (5)0.535201 (17)0.42287 (3)0.04673 (14)
O10.2608 (4)0.40743 (10)−0.0690 (2)0.0797 (9)
O20.5120 (4)0.39512 (10)0.0279 (2)0.0754 (8)
N10.5275 (4)0.80533 (13)−0.0531 (3)0.0746 (10)
N20.4084 (3)0.64870 (9)0.1936 (2)0.0424 (6)
N30.3834 (4)0.41930 (11)0.0065 (2)0.0552 (8)
S10.08507 (13)0.76215 (4)0.75005 (9)0.0690 (3)
S2−0.05329 (12)0.69214 (4)0.55265 (9)0.0660 (3)
S30.27096 (11)0.67162 (4)0.69657 (8)0.0602 (3)
S4−0.05363 (11)0.59682 (4)0.40526 (8)0.0620 (3)
S50.29798 (11)0.57297 (4)0.56561 (8)0.0578 (3)
S6−0.04453 (10)0.49687 (4)0.27893 (8)0.0581 (3)
S70.30541 (10)0.47438 (4)0.44187 (8)0.0559 (3)
S8−0.01230 (12)0.39818 (4)0.15167 (8)0.0661 (3)
S90.31466 (11)0.37927 (4)0.29563 (8)0.0596 (3)
S100.16951 (15)0.30728 (4)0.10160 (11)0.0842 (4)
C10.0997 (4)0.71136 (13)0.6712 (3)0.0553 (9)
C20.0396 (4)0.63686 (13)0.5171 (3)0.0514 (9)
C30.1933 (4)0.62697 (13)0.5861 (3)0.0499 (9)
C40.0626 (4)0.44299 (13)0.2605 (3)0.0510 (9)
C50.2162 (4)0.43352 (13)0.3297 (3)0.0487 (8)
C60.1579 (4)0.35837 (14)0.1780 (3)0.0602 (10)
C80.4722 (4)0.72766 (12)0.0638 (3)0.0442 (8)
C90.5968 (4)0.70593 (12)0.1495 (3)0.0480 (8)
H90.70350.71840.16430.058*
C100.5612 (4)0.66582 (12)0.2124 (3)0.0472 (8)
H100.64510.65030.26930.057*
C110.2853 (4)0.66928 (12)0.1100 (3)0.0458 (8)
H110.17930.65650.09760.055*
C120.3145 (4)0.70877 (12)0.0432 (3)0.0484 (8)
H120.22950.7228−0.01530.058*
C130.3706 (4)0.60448 (12)0.2623 (3)0.0511 (9)
H13A0.26370.60970.27490.061*
H13B0.45160.60310.33720.061*
C140.5122 (4)0.52460 (13)0.2208 (3)0.0485 (9)
H140.60520.53480.27810.058*
C150.3716 (4)0.55425 (11)0.1992 (2)0.0404 (7)
C160.2328 (4)0.53870 (12)0.1150 (3)0.0476 (8)
H160.13710.55810.10130.057*
C170.2358 (4)0.49449 (12)0.0513 (3)0.0474 (8)
H170.14350.4841−0.00640.057*
C180.3785 (4)0.46620 (12)0.0752 (2)0.0415 (8)
C190.5162 (4)0.48020 (13)0.1588 (3)0.0484 (8)
H190.61090.46020.17350.058*
C200.5035 (4)0.77070 (14)−0.0025 (3)0.0538 (9)
U11U22U33U12U13U23
Ni10.0354 (2)0.0605 (3)0.0427 (3)0.0008 (2)0.00814 (19)0.0116 (2)
O10.094 (2)0.0649 (18)0.0670 (18)−0.0028 (15)0.0001 (16)−0.0202 (14)
O20.083 (2)0.0650 (18)0.0817 (19)0.0176 (16)0.0288 (16)−0.0093 (14)
N10.084 (2)0.070 (2)0.068 (2)−0.0089 (19)0.0177 (19)0.0166 (18)
N20.0533 (17)0.0397 (15)0.0352 (14)−0.0012 (13)0.0137 (13)−0.0033 (12)
N30.075 (2)0.0465 (19)0.0471 (18)−0.0005 (17)0.0216 (17)0.0048 (14)
S10.0714 (7)0.0700 (7)0.0707 (7)0.0025 (5)0.0282 (5)0.0038 (5)
S20.0494 (6)0.0619 (6)0.0801 (7)0.0097 (5)0.0074 (5)0.0082 (5)
S30.0480 (5)0.0662 (6)0.0623 (6)0.0019 (5)0.0082 (4)0.0029 (5)
S40.0433 (5)0.0683 (7)0.0632 (6)0.0080 (4)−0.0037 (4)0.0067 (5)
S50.0409 (5)0.0680 (6)0.0569 (6)0.0088 (4)0.0011 (4)0.0029 (5)
S60.0376 (5)0.0763 (7)0.0546 (6)0.0032 (4)0.0031 (4)0.0042 (5)
S70.0403 (5)0.0726 (6)0.0486 (5)0.0074 (4)0.0022 (4)0.0011 (4)
S80.0549 (6)0.0742 (7)0.0610 (6)−0.0100 (5)0.0026 (5)−0.0021 (5)
S90.0533 (6)0.0602 (6)0.0634 (6)0.0004 (5)0.0133 (5)0.0046 (5)
S100.0937 (9)0.0676 (7)0.0933 (8)−0.0168 (6)0.0295 (7)−0.0164 (6)
C10.051 (2)0.058 (2)0.062 (2)−0.0038 (17)0.0230 (18)0.0135 (18)
C20.0419 (19)0.051 (2)0.061 (2)0.0022 (16)0.0148 (17)0.0148 (17)
C30.046 (2)0.051 (2)0.052 (2)−0.0036 (16)0.0117 (16)0.0121 (16)
C40.044 (2)0.062 (2)0.047 (2)−0.0052 (17)0.0128 (16)0.0072 (17)
C50.0421 (19)0.060 (2)0.0463 (19)−0.0017 (16)0.0159 (16)0.0101 (16)
C60.060 (2)0.066 (2)0.056 (2)−0.0156 (19)0.0190 (18)0.0090 (18)
C80.057 (2)0.0373 (19)0.0412 (19)−0.0013 (16)0.0175 (16)−0.0019 (15)
C90.049 (2)0.049 (2)0.046 (2)−0.0029 (16)0.0124 (16)0.0001 (16)
C100.052 (2)0.048 (2)0.0385 (18)0.0043 (17)0.0067 (15)−0.0020 (16)
C110.048 (2)0.040 (2)0.051 (2)−0.0027 (16)0.0153 (16)−0.0069 (16)
C120.053 (2)0.043 (2)0.0460 (19)0.0058 (16)0.0087 (16)−0.0009 (16)
C130.071 (2)0.047 (2)0.0395 (18)−0.0047 (18)0.0208 (17)0.0023 (16)
C140.048 (2)0.056 (2)0.0364 (18)−0.0059 (16)0.0029 (15)0.0038 (16)
C150.050 (2)0.0405 (18)0.0329 (16)−0.0041 (15)0.0144 (15)0.0059 (14)
C160.0411 (18)0.046 (2)0.055 (2)0.0015 (15)0.0122 (16)0.0055 (17)
C170.0404 (19)0.046 (2)0.050 (2)−0.0060 (16)0.0036 (16)0.0034 (16)
C180.054 (2)0.0370 (18)0.0370 (17)−0.0027 (15)0.0175 (15)0.0038 (14)
C190.047 (2)0.050 (2)0.046 (2)0.0050 (16)0.0102 (16)0.0078 (16)
C200.061 (2)0.052 (2)0.047 (2)−0.0031 (18)0.0120 (18)0.0024 (18)
Ni1—S52.1570 (10)C2—C31.362 (4)
Ni1—S72.1591 (10)C4—C51.360 (4)
Ni1—S62.1596 (10)C8—C91.375 (4)
Ni1—S42.1661 (10)C8—C121.380 (4)
O1—N31.215 (3)C8—C201.434 (5)
O2—N31.220 (4)C9—C101.365 (4)
N1—C201.132 (4)C9—H90.9300
N2—C101.328 (4)C10—H100.9300
N2—C111.343 (4)C11—C121.362 (4)
N2—C131.495 (4)C11—H110.9300
N3—C181.473 (4)C12—H120.9300
S1—C11.643 (4)C13—C151.503 (4)
S2—C11.714 (4)C13—H13A0.9700
S2—C21.740 (4)C13—H13B0.9700
S3—C11.735 (4)C14—C191.373 (4)
S3—C31.744 (3)C14—C151.379 (4)
S4—C21.707 (4)C14—H140.9300
S5—C31.707 (4)C15—C161.383 (4)
S6—C41.709 (4)C16—C171.378 (4)
S7—C51.714 (3)C16—H160.9300
S8—C61.728 (4)C17—C181.375 (4)
S8—C41.730 (3)C17—H170.9300
S9—C51.736 (4)C18—C191.362 (4)
S9—C61.738 (4)C19—H190.9300
S10—C61.626 (4)
S5—Ni1—S786.47 (4)C9—C8—C20120.7 (3)
S5—Ni1—S6178.98 (4)C12—C8—C20119.6 (3)
S7—Ni1—S692.69 (4)C10—C9—C8118.9 (3)
S5—Ni1—S492.83 (4)C10—C9—H9120.6
S7—Ni1—S4179.28 (4)C8—C9—H9120.6
S6—Ni1—S488.01 (4)N2—C10—C9120.9 (3)
C10—N2—C11121.1 (3)N2—C10—H10119.5
C10—N2—C13120.6 (3)C9—C10—H10119.5
C11—N2—C13118.3 (3)N2—C11—C12120.4 (3)
O1—N3—O2124.0 (3)N2—C11—H11119.8
O1—N3—C18118.4 (3)C12—C11—H11119.8
O2—N3—C18117.7 (3)C11—C12—C8119.0 (3)
C1—S2—C298.72 (17)C11—C12—H12120.5
C1—S3—C397.80 (16)C8—C12—H12120.5
C2—S4—Ni1102.02 (12)N2—C13—C15110.2 (2)
C3—S5—Ni1102.58 (11)N2—C13—H13A109.6
C4—S6—Ni1102.50 (11)C15—C13—H13A109.6
C5—S7—Ni1102.63 (12)N2—C13—H13B109.6
C6—S8—C498.39 (16)C15—C13—H13B109.6
C5—S9—C697.64 (17)H13A—C13—H13B108.1
S1—C1—S2123.4 (2)C19—C14—C15120.7 (3)
S1—C1—S3124.3 (2)C19—C14—H14119.6
S2—C1—S3112.3 (2)C15—C14—H14119.6
C3—C2—S4121.6 (3)C14—C15—C16119.5 (3)
C3—C2—S2115.2 (3)C14—C15—C13120.6 (3)
S4—C2—S2123.19 (19)C16—C15—C13119.8 (3)
C2—C3—S5120.9 (3)C17—C16—C15120.3 (3)
C2—C3—S3115.9 (3)C17—C16—H16119.9
S5—C3—S3123.24 (19)C15—C16—H16119.9
C5—C4—S6121.4 (3)C18—C17—C16118.3 (3)
C5—C4—S8115.6 (3)C18—C17—H17120.9
S6—C4—S8123.02 (19)C16—C17—H17120.9
C4—C5—S7120.7 (3)C19—C18—C17122.6 (3)
C4—C5—S9116.3 (3)C19—C18—N3118.7 (3)
S7—C5—S9123.06 (19)C17—C18—N3118.6 (3)
S10—C6—S8123.9 (2)C18—C19—C14118.5 (3)
S10—C6—S9124.0 (2)C18—C19—H19120.8
S8—C6—S9112.1 (2)C14—C19—H19120.8
C9—C8—C12119.7 (3)N1—C20—C8178.6 (4)
S5—Ni1—S4—C2−3.08 (12)C6—S9—C5—C4−0.8 (3)
S6—Ni1—S4—C2177.50 (12)C6—S9—C5—S7−179.6 (2)
S7—Ni1—S5—C3−177.63 (12)C4—S8—C6—S10−179.0 (2)
S4—Ni1—S5—C32.52 (12)C4—S8—C6—S91.1 (2)
S7—Ni1—S6—C4−2.01 (12)C5—S9—C6—S10179.7 (2)
S4—Ni1—S6—C4177.84 (12)C5—S9—C6—S8−0.4 (2)
S5—Ni1—S7—C5−176.49 (12)C12—C8—C9—C100.2 (5)
S6—Ni1—S7—C52.94 (12)C20—C8—C9—C10178.5 (3)
C2—S2—C1—S1−177.9 (2)C11—N2—C10—C92.0 (5)
C2—S2—C1—S32.8 (2)C13—N2—C10—C9179.5 (3)
C3—S3—C1—S1177.6 (2)C8—C9—C10—N2−1.7 (5)
C3—S3—C1—S2−3.1 (2)C10—N2—C11—C12−0.7 (5)
Ni1—S4—C2—C33.3 (3)C13—N2—C11—C12−178.4 (3)
Ni1—S4—C2—S2−175.84 (18)N2—C11—C12—C8−0.8 (5)
C1—S2—C2—C3−1.3 (3)C9—C8—C12—C111.0 (5)
C1—S2—C2—S4177.9 (2)C20—C8—C12—C11−177.3 (3)
S4—C2—C3—S5−1.5 (4)C10—N2—C13—C15−93.8 (3)
S2—C2—C3—S5177.70 (18)C11—N2—C13—C1583.8 (4)
S4—C2—C3—S3−179.97 (18)C19—C14—C15—C160.7 (5)
S2—C2—C3—S3−0.7 (4)C19—C14—C15—C13−176.3 (3)
Ni1—S5—C3—C2−1.2 (3)N2—C13—C15—C1493.1 (3)
Ni1—S5—C3—S3177.12 (18)N2—C13—C15—C16−84.0 (4)
C1—S3—C3—C22.4 (3)C14—C15—C16—C17−1.4 (5)
C1—S3—C3—S5−176.0 (2)C13—C15—C16—C17175.7 (3)
Ni1—S6—C4—C50.3 (3)C15—C16—C17—C181.1 (5)
Ni1—S6—C4—S8−177.69 (18)C16—C17—C18—C19−0.1 (5)
C6—S8—C4—C5−1.7 (3)C16—C17—C18—N3−179.2 (3)
C6—S8—C4—S6176.4 (2)O1—N3—C18—C19−179.0 (3)
S6—C4—C5—S72.4 (4)O2—N3—C18—C19−0.1 (4)
S8—C4—C5—S7−179.46 (18)O1—N3—C18—C170.1 (4)
S6—C4—C5—S9−176.42 (18)O2—N3—C18—C17179.0 (3)
S8—C4—C5—S91.7 (4)C17—C18—C19—C14−0.5 (5)
Ni1—S7—C5—C4−3.7 (3)N3—C18—C19—C14178.5 (3)
Ni1—S7—C5—S9175.08 (17)C15—C14—C19—C180.2 (5)
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