| Literature DB >> 21587444 |
Jun Wang1, Chuntao Dai, Dongmei Zhao.
Abstract
In the title compound, [Cu(C(14)H(9)N(2)O(2))(2)]·2H(2)O, the Cu(II) ion lies on a centre of symmetry and is four-coordinated by two N atoms and two O atoms from two 2-(1H-benzimidazol-2-yl)benzoate ligands in a square-planar environment. The benzimidazol and benzyl rings form a dihedral angle of 42.8 (5)°. The mol-ecule contains two H-bonded carboxyl O acceptors and two H-bonded N-H donors in the benzimidazol groups, which inter-act with two symmetry-related uncoordinated water mol-ecules so that neighboring mol-ecular units are linked by (O-H)(water)⋯O(carbox-yl) hydrogen bonds with an R(2) (4)(8) graph-set motif, generating a helical chain in the a-axis direction. These chains are, in turn, inter-connected by (N-H)(benzimidazol)⋯O(water) hydrogen bonds, forming a three-dimensional supra-molecular network.Entities:
Year: 2010 PMID: 21587444 PMCID: PMC2983125 DOI: 10.1107/S1600536810037633
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| [Cu(C14H9N2O2)2]·2H2O | |
| Monoclinic, | Mo |
| Hall symbol: -P 2ybc | Cell parameters from 4800 reflections |
| θ = 1.4–28.0° | |
| µ = 0.89 mm−1 | |
| β = 115.735 (1)° | Block, blue |
| 0.23 × 0.21 × 0.16 mm | |
| Bruker APEXII CCD area-detector diffractometer | 2974 independent reflections |
| Radiation source: fine-focus sealed tube | 1854 reflections with |
| graphite | |
| φ and ω scan | θmax = 27.5°, θmin = 1.9° |
| Absorption correction: multi-scan ( | |
| 14480 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H-atom parameters constrained | |
| 2974 reflections | (Δ/σ)max = 0.001 |
| 178 parameters | Δρmax = 0.29 e Å−3 |
| 0 restraints | Δρmin = −0.33 e Å−3 |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
| Cu1 | 0.5000 | 0.5000 | 0.5000 | 0.03258 (17) | |
| C1 | 0.5169 (3) | 0.8319 (4) | 0.6049 (2) | 0.0354 (7) | |
| C2 | 0.4078 (3) | 0.9168 (4) | 0.5430 (2) | 0.0439 (8) | |
| H2 | 0.3519 | 0.8648 | 0.4883 | 0.053* | |
| C3 | 0.3861 (4) | 1.0813 (5) | 0.5665 (3) | 0.0511 (9) | |
| H3 | 0.3139 | 1.1414 | 0.5265 | 0.061* | |
| C4 | 0.4686 (4) | 1.1600 (5) | 0.6478 (3) | 0.0582 (10) | |
| H4 | 0.4508 | 1.2721 | 0.6605 | 0.070* | |
| C5 | 0.5758 (4) | 1.0775 (5) | 0.7099 (3) | 0.0535 (10) | |
| H5 | 0.6302 | 1.1301 | 0.7649 | 0.064* | |
| C6 | 0.5994 (3) | 0.9111 (4) | 0.6870 (2) | 0.0400 (8) | |
| C7 | 0.6757 (3) | 0.6520 (4) | 0.6772 (2) | 0.0332 (7) | |
| C8 | 0.7588 (3) | 0.4981 (4) | 0.7070 (2) | 0.0358 (7) | |
| C9 | 0.8024 (3) | 0.4489 (5) | 0.7992 (2) | 0.0504 (9) | |
| H9 | 0.7779 | 0.5126 | 0.8378 | 0.060* | |
| C10 | 0.8814 (4) | 0.3068 (5) | 0.8332 (3) | 0.0632 (11) | |
| H10 | 0.9096 | 0.2750 | 0.8945 | 0.076* | |
| C11 | 0.9187 (3) | 0.2119 (5) | 0.7768 (3) | 0.0604 (11) | |
| H11 | 0.9700 | 0.1141 | 0.7994 | 0.072* | |
| C12 | 0.8798 (3) | 0.2620 (4) | 0.6868 (2) | 0.0502 (9) | |
| H12 | 0.9075 | 0.1995 | 0.6495 | 0.060* | |
| C13 | 0.7996 (3) | 0.4051 (4) | 0.6504 (2) | 0.0367 (7) | |
| C14 | 0.7735 (3) | 0.4580 (4) | 0.5535 (2) | 0.0386 (8) | |
| N1 | 0.5679 (2) | 0.6681 (3) | 0.60034 (16) | 0.0327 (6) | |
| N2 | 0.6971 (2) | 0.7946 (3) | 0.73035 (17) | 0.0413 (7) | |
| H2A | 0.7614 | 0.8103 | 0.7828 | 0.050* | |
| O1 | 0.66231 (18) | 0.4956 (3) | 0.49508 (13) | 0.0392 (5) | |
| O2 | 0.8661 (2) | 0.4584 (4) | 0.53508 (16) | 0.0636 (8) | |
| O1W | 0.8855 (2) | 0.8417 (3) | 0.90275 (15) | 0.0624 (7) | |
| H1W | 0.8680 | 0.8979 | 0.9406 | 0.094* | |
| H2W | 0.9618 | 0.8657 | 0.9144 | 0.094* |
| Cu1 | 0.0257 (3) | 0.0338 (3) | 0.0323 (3) | 0.0030 (3) | 0.0070 (2) | −0.0034 (3) |
| C1 | 0.0397 (19) | 0.0320 (17) | 0.0387 (18) | −0.0002 (14) | 0.0210 (15) | −0.0016 (15) |
| C2 | 0.042 (2) | 0.0385 (19) | 0.049 (2) | 0.0043 (16) | 0.0178 (17) | 0.0018 (17) |
| C3 | 0.054 (2) | 0.041 (2) | 0.066 (3) | 0.0104 (19) | 0.034 (2) | 0.0083 (19) |
| C4 | 0.074 (3) | 0.033 (2) | 0.087 (3) | 0.0080 (19) | 0.053 (3) | −0.003 (2) |
| C5 | 0.064 (3) | 0.042 (2) | 0.061 (2) | −0.0088 (19) | 0.032 (2) | −0.0177 (19) |
| C6 | 0.042 (2) | 0.0360 (18) | 0.046 (2) | −0.0016 (16) | 0.0223 (17) | −0.0025 (16) |
| C7 | 0.0321 (17) | 0.0363 (18) | 0.0308 (16) | −0.0041 (14) | 0.0132 (14) | −0.0034 (14) |
| C8 | 0.0265 (15) | 0.0371 (16) | 0.0371 (17) | −0.0048 (16) | 0.0076 (13) | 0.0013 (16) |
| C9 | 0.050 (2) | 0.056 (2) | 0.041 (2) | 0.0050 (17) | 0.0153 (17) | 0.0057 (16) |
| C10 | 0.059 (3) | 0.073 (3) | 0.047 (2) | 0.009 (2) | 0.014 (2) | 0.022 (2) |
| C11 | 0.051 (2) | 0.059 (2) | 0.066 (3) | 0.023 (2) | 0.021 (2) | 0.029 (2) |
| C12 | 0.043 (2) | 0.051 (2) | 0.058 (2) | 0.0089 (17) | 0.0228 (18) | 0.0113 (18) |
| C13 | 0.0288 (17) | 0.0374 (18) | 0.0396 (18) | 0.0014 (14) | 0.0109 (14) | 0.0048 (15) |
| C14 | 0.0335 (19) | 0.038 (2) | 0.0420 (19) | 0.0006 (14) | 0.0142 (16) | 0.0020 (14) |
| N1 | 0.0292 (14) | 0.0314 (14) | 0.0326 (14) | 0.0024 (11) | 0.0089 (11) | −0.0040 (11) |
| N2 | 0.0385 (16) | 0.0449 (17) | 0.0335 (14) | −0.0063 (13) | 0.0090 (12) | −0.0094 (13) |
| O1 | 0.0296 (12) | 0.0483 (13) | 0.0362 (12) | 0.0045 (11) | 0.0111 (9) | 0.0010 (11) |
| O2 | 0.0334 (14) | 0.109 (2) | 0.0530 (15) | 0.0133 (14) | 0.0232 (12) | 0.0240 (14) |
| O1W | 0.0453 (15) | 0.0879 (19) | 0.0496 (15) | −0.0167 (14) | 0.0165 (12) | −0.0258 (14) |
| Cu1—O1i | 1.9227 (19) | C7—C8 | 1.470 (4) |
| Cu1—O1 | 1.9227 (19) | C8—C13 | 1.396 (4) |
| Cu1—N1 | 1.951 (2) | C8—C9 | 1.400 (4) |
| Cu1—N1i | 1.951 (2) | C9—C10 | 1.379 (5) |
| C1—C2 | 1.390 (4) | C9—H9 | 0.9300 |
| C1—C6 | 1.395 (4) | C10—C11 | 1.376 (5) |
| C1—N1 | 1.407 (4) | C10—H10 | 0.9300 |
| C2—C3 | 1.374 (5) | C11—C12 | 1.376 (5) |
| C2—H2 | 0.9300 | C11—H11 | 0.9300 |
| C3—C4 | 1.384 (5) | C12—C13 | 1.396 (4) |
| C3—H3 | 0.9300 | C12—H12 | 0.9300 |
| C4—C5 | 1.370 (5) | C13—C14 | 1.513 (4) |
| C4—H4 | 0.9300 | C14—O2 | 1.235 (4) |
| C5—C6 | 1.392 (5) | C14—O1 | 1.259 (3) |
| C5—H5 | 0.9300 | N2—H2A | 0.8600 |
| C6—N2 | 1.376 (4) | O1W—H1W | 0.8415 |
| C7—N1 | 1.333 (3) | O1W—H2W | 0.8432 |
| C7—N2 | 1.347 (3) | ||
| O1i—Cu1—O1 | 180.0 | C13—C8—C7 | 124.1 (3) |
| O1i—Cu1—N1 | 90.25 (9) | C9—C8—C7 | 116.6 (3) |
| O1—Cu1—N1 | 89.75 (9) | C10—C9—C8 | 120.6 (3) |
| O1i—Cu1—N1i | 89.75 (9) | C10—C9—H9 | 119.7 |
| O1—Cu1—N1i | 90.25 (9) | C8—C9—H9 | 119.7 |
| N1—Cu1—N1i | 180.0 | C11—C10—C9 | 120.2 (3) |
| C2—C1—C6 | 120.9 (3) | C11—C10—H10 | 119.9 |
| C2—C1—N1 | 131.1 (3) | C9—C10—H10 | 119.9 |
| C6—C1—N1 | 108.0 (3) | C12—C11—C10 | 119.8 (3) |
| C3—C2—C1 | 117.0 (3) | C12—C11—H11 | 120.1 |
| C3—C2—H2 | 121.5 | C10—C11—H11 | 120.1 |
| C1—C2—H2 | 121.5 | C11—C12—C13 | 121.3 (3) |
| C2—C3—C4 | 122.0 (3) | C11—C12—H12 | 119.4 |
| C2—C3—H3 | 119.0 | C13—C12—H12 | 119.4 |
| C4—C3—H3 | 119.0 | C8—C13—C12 | 118.9 (3) |
| C5—C4—C3 | 121.8 (3) | C8—C13—C14 | 124.4 (3) |
| C5—C4—H4 | 119.1 | C12—C13—C14 | 116.4 (3) |
| C3—C4—H4 | 119.1 | O2—C14—O1 | 122.5 (3) |
| C4—C5—C6 | 116.9 (3) | O2—C14—C13 | 116.4 (3) |
| C4—C5—H5 | 121.5 | O1—C14—C13 | 121.1 (3) |
| C6—C5—H5 | 121.5 | C7—N1—C1 | 106.4 (2) |
| N2—C6—C5 | 132.7 (3) | C7—N1—Cu1 | 126.1 (2) |
| N2—C6—C1 | 105.9 (3) | C1—N1—Cu1 | 127.5 (2) |
| C5—C6—C1 | 121.4 (3) | C7—N2—C6 | 108.8 (3) |
| N1—C7—N2 | 110.9 (3) | C7—N2—H2A | 125.6 |
| N1—C7—C8 | 126.7 (3) | C6—N2—H2A | 125.6 |
| N2—C7—C8 | 122.3 (3) | C14—O1—Cu1 | 132.8 (2) |
| C13—C8—C9 | 119.2 (3) | H1W—O1W—H2W | 106.7 |
| H··· | ||||
| N2—H2A···O1W | 0.86 | 1.86 | 2.716 (3) | 173 |
| O1W—H1W···O2ii | 0.84 | 1.89 | 2.720 (3) | 167 |
| O1W—H2W···O2iii | 0.84 | 1.94 | 2.763 (3) | 165 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| N2—H2 | 0.86 | 1.86 | 2.716 (3) | 173 |
| O1 | 0.84 | 1.89 | 2.720 (3) | 167 |
| O1 | 0.84 | 1.94 | 2.763 (3) | 165 |
Symmetry codes: (i) ; (ii) .