Literature DB >> 21587444

Bis[2-(1H-benzimidazol-2-yl)benzoato]copper(II) dihydrate.

Jun Wang1, Chuntao Dai, Dongmei Zhao.   

Abstract

In the title compound, [Cu(C(14)H(9)N(2)O(2))(2)]·2H(2)O, the Cu(II) ion lies on a centre of symmetry and is four-coordinated by two N atoms and two O atoms from two 2-(1H-benzimidazol-2-yl)benzoate ligands in a square-planar environment. The benzimidazol and benzyl rings form a dihedral angle of 42.8 (5)°. The mol-ecule contains two H-bonded carboxyl O acceptors and two H-bonded N-H donors in the benzimidazol groups, which inter-act with two symmetry-related uncoordinated water mol-ecules so that neighboring mol-ecular units are linked by (O-H)(water)⋯O(carbox-yl) hydrogen bonds with an R(2) (4)(8) graph-set motif, generating a helical chain in the a-axis direction. These chains are, in turn, inter-connected by (N-H)(benzimidazol)⋯O(water) hydrogen bonds, forming a three-dimensional supra-molecular network.

Entities:  

Year:  2010        PMID: 21587444      PMCID: PMC2983125          DOI: 10.1107/S1600536810037633

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the structural diversity and potential applications in functional materials of metal coordination polymers based on benzimidazole derivatives, see: Aminabhavi et al. (1986 ▶); Isele et al. (2005 ▶). For similar structures, see: Che et al. (2006 ▶); Fang et al. (2006 ▶); Liu et al. (2004 ▶); Li et al. (2010 ▶). For hydrogen-bond motifs, see: Bernstein et al. (1995 ▶).

Experimental

Crystal data

[Cu(C14H9N2O2)2]·2H2O M = 574.04 Monoclinic, a = 11.6235 (2) Å b = 7.6920 (2) Å c = 16.1410 (3) Å β = 115.735 (1)° V = 1299.99 (5) Å3 Z = 2 Mo Kα radiation μ = 0.89 mm−1 T = 296 K 0.23 × 0.21 × 0.16 mm

Data collection

Bruker APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 2008a ▶) T min = 0.821, T max = 0.871 14480 measured reflections 2974 independent reflections 1854 reflections with I > 2σ(I) R int = 0.063

Refinement

R[F 2 > 2σ(F 2)] = 0.046 wR(F 2) = 0.110 S = 1.00 2974 reflections 178 parameters H-atom parameters constrained Δρmax = 0.29 e Å−3 Δρmin = −0.33 e Å−3 Data collection: APEX2 (Bruker, 2004 ▶); cell refinement: SAINT (Bruker, 2004 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008b ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008b ▶); molecular graphics: XP in SHELXTL (Sheldrick, 2008b ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536810037633/bg2369sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810037633/bg2369Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Cu(C14H9N2O2)2]·2H2OF(000) = 590
Mr = 574.04Dx = 1.466 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 4800 reflections
a = 11.6235 (2) Åθ = 1.4–28.0°
b = 7.6920 (2) ŵ = 0.89 mm1
c = 16.1410 (3) ÅT = 296 K
β = 115.735 (1)°Block, blue
V = 1299.99 (5) Å30.23 × 0.21 × 0.16 mm
Z = 2
Bruker APEXII CCD area-detector diffractometer2974 independent reflections
Radiation source: fine-focus sealed tube1854 reflections with I > 2σ(I)
graphiteRint = 0.063
φ and ω scanθmax = 27.5°, θmin = 1.9°
Absorption correction: multi-scan (SADABS; Sheldrick, 2008a)h = −15→14
Tmin = 0.821, Tmax = 0.871k = −9→9
14480 measured reflectionsl = −20→20
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.046Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.110H-atom parameters constrained
S = 1.00w = 1/[σ2(Fo2) + (0.0379P)2 + 0.7646P] where P = (Fo2 + 2Fc2)/3
2974 reflections(Δ/σ)max = 0.001
178 parametersΔρmax = 0.29 e Å3
0 restraintsΔρmin = −0.33 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cu10.50000.50000.50000.03258 (17)
C10.5169 (3)0.8319 (4)0.6049 (2)0.0354 (7)
C20.4078 (3)0.9168 (4)0.5430 (2)0.0439 (8)
H20.35190.86480.48830.053*
C30.3861 (4)1.0813 (5)0.5665 (3)0.0511 (9)
H30.31391.14140.52650.061*
C40.4686 (4)1.1600 (5)0.6478 (3)0.0582 (10)
H40.45081.27210.66050.070*
C50.5758 (4)1.0775 (5)0.7099 (3)0.0535 (10)
H50.63021.13010.76490.064*
C60.5994 (3)0.9111 (4)0.6870 (2)0.0400 (8)
C70.6757 (3)0.6520 (4)0.6772 (2)0.0332 (7)
C80.7588 (3)0.4981 (4)0.7070 (2)0.0358 (7)
C90.8024 (3)0.4489 (5)0.7992 (2)0.0504 (9)
H90.77790.51260.83780.060*
C100.8814 (4)0.3068 (5)0.8332 (3)0.0632 (11)
H100.90960.27500.89450.076*
C110.9187 (3)0.2119 (5)0.7768 (3)0.0604 (11)
H110.97000.11410.79940.072*
C120.8798 (3)0.2620 (4)0.6868 (2)0.0502 (9)
H120.90750.19950.64950.060*
C130.7996 (3)0.4051 (4)0.6504 (2)0.0367 (7)
C140.7735 (3)0.4580 (4)0.5535 (2)0.0386 (8)
N10.5679 (2)0.6681 (3)0.60034 (16)0.0327 (6)
N20.6971 (2)0.7946 (3)0.73035 (17)0.0413 (7)
H2A0.76140.81030.78280.050*
O10.66231 (18)0.4956 (3)0.49508 (13)0.0392 (5)
O20.8661 (2)0.4584 (4)0.53508 (16)0.0636 (8)
O1W0.8855 (2)0.8417 (3)0.90275 (15)0.0624 (7)
H1W0.86800.89790.94060.094*
H2W0.96180.86570.91440.094*
U11U22U33U12U13U23
Cu10.0257 (3)0.0338 (3)0.0323 (3)0.0030 (3)0.0070 (2)−0.0034 (3)
C10.0397 (19)0.0320 (17)0.0387 (18)−0.0002 (14)0.0210 (15)−0.0016 (15)
C20.042 (2)0.0385 (19)0.049 (2)0.0043 (16)0.0178 (17)0.0018 (17)
C30.054 (2)0.041 (2)0.066 (3)0.0104 (19)0.034 (2)0.0083 (19)
C40.074 (3)0.033 (2)0.087 (3)0.0080 (19)0.053 (3)−0.003 (2)
C50.064 (3)0.042 (2)0.061 (2)−0.0088 (19)0.032 (2)−0.0177 (19)
C60.042 (2)0.0360 (18)0.046 (2)−0.0016 (16)0.0223 (17)−0.0025 (16)
C70.0321 (17)0.0363 (18)0.0308 (16)−0.0041 (14)0.0132 (14)−0.0034 (14)
C80.0265 (15)0.0371 (16)0.0371 (17)−0.0048 (16)0.0076 (13)0.0013 (16)
C90.050 (2)0.056 (2)0.041 (2)0.0050 (17)0.0153 (17)0.0057 (16)
C100.059 (3)0.073 (3)0.047 (2)0.009 (2)0.014 (2)0.022 (2)
C110.051 (2)0.059 (2)0.066 (3)0.023 (2)0.021 (2)0.029 (2)
C120.043 (2)0.051 (2)0.058 (2)0.0089 (17)0.0228 (18)0.0113 (18)
C130.0288 (17)0.0374 (18)0.0396 (18)0.0014 (14)0.0109 (14)0.0048 (15)
C140.0335 (19)0.038 (2)0.0420 (19)0.0006 (14)0.0142 (16)0.0020 (14)
N10.0292 (14)0.0314 (14)0.0326 (14)0.0024 (11)0.0089 (11)−0.0040 (11)
N20.0385 (16)0.0449 (17)0.0335 (14)−0.0063 (13)0.0090 (12)−0.0094 (13)
O10.0296 (12)0.0483 (13)0.0362 (12)0.0045 (11)0.0111 (9)0.0010 (11)
O20.0334 (14)0.109 (2)0.0530 (15)0.0133 (14)0.0232 (12)0.0240 (14)
O1W0.0453 (15)0.0879 (19)0.0496 (15)−0.0167 (14)0.0165 (12)−0.0258 (14)
Cu1—O1i1.9227 (19)C7—C81.470 (4)
Cu1—O11.9227 (19)C8—C131.396 (4)
Cu1—N11.951 (2)C8—C91.400 (4)
Cu1—N1i1.951 (2)C9—C101.379 (5)
C1—C21.390 (4)C9—H90.9300
C1—C61.395 (4)C10—C111.376 (5)
C1—N11.407 (4)C10—H100.9300
C2—C31.374 (5)C11—C121.376 (5)
C2—H20.9300C11—H110.9300
C3—C41.384 (5)C12—C131.396 (4)
C3—H30.9300C12—H120.9300
C4—C51.370 (5)C13—C141.513 (4)
C4—H40.9300C14—O21.235 (4)
C5—C61.392 (5)C14—O11.259 (3)
C5—H50.9300N2—H2A0.8600
C6—N21.376 (4)O1W—H1W0.8415
C7—N11.333 (3)O1W—H2W0.8432
C7—N21.347 (3)
O1i—Cu1—O1180.0C13—C8—C7124.1 (3)
O1i—Cu1—N190.25 (9)C9—C8—C7116.6 (3)
O1—Cu1—N189.75 (9)C10—C9—C8120.6 (3)
O1i—Cu1—N1i89.75 (9)C10—C9—H9119.7
O1—Cu1—N1i90.25 (9)C8—C9—H9119.7
N1—Cu1—N1i180.0C11—C10—C9120.2 (3)
C2—C1—C6120.9 (3)C11—C10—H10119.9
C2—C1—N1131.1 (3)C9—C10—H10119.9
C6—C1—N1108.0 (3)C12—C11—C10119.8 (3)
C3—C2—C1117.0 (3)C12—C11—H11120.1
C3—C2—H2121.5C10—C11—H11120.1
C1—C2—H2121.5C11—C12—C13121.3 (3)
C2—C3—C4122.0 (3)C11—C12—H12119.4
C2—C3—H3119.0C13—C12—H12119.4
C4—C3—H3119.0C8—C13—C12118.9 (3)
C5—C4—C3121.8 (3)C8—C13—C14124.4 (3)
C5—C4—H4119.1C12—C13—C14116.4 (3)
C3—C4—H4119.1O2—C14—O1122.5 (3)
C4—C5—C6116.9 (3)O2—C14—C13116.4 (3)
C4—C5—H5121.5O1—C14—C13121.1 (3)
C6—C5—H5121.5C7—N1—C1106.4 (2)
N2—C6—C5132.7 (3)C7—N1—Cu1126.1 (2)
N2—C6—C1105.9 (3)C1—N1—Cu1127.5 (2)
C5—C6—C1121.4 (3)C7—N2—C6108.8 (3)
N1—C7—N2110.9 (3)C7—N2—H2A125.6
N1—C7—C8126.7 (3)C6—N2—H2A125.6
N2—C7—C8122.3 (3)C14—O1—Cu1132.8 (2)
C13—C8—C9119.2 (3)H1W—O1W—H2W106.7
D—H···AD—HH···AD···AD—H···A
N2—H2A···O1W0.861.862.716 (3)173
O1W—H1W···O2ii0.841.892.720 (3)167
O1W—H2W···O2iii0.841.942.763 (3)165
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N2—H2A⋯O1W0.861.862.716 (3)173
O1W—H1W⋯O2i0.841.892.720 (3)167
O1W—H2W⋯O2ii0.841.942.763 (3)165

Symmetry codes: (i) ; (ii) .

  2 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Self-assembly and interconversion of tetranuclear copper(II) complexes.

Authors:  Katharina Isele; Patrick Franz; Christina Ambrus; Gérald Bernardinelli; Silvio Decurtins; Alan F Williams
Journal:  Inorg Chem       Date:  2005-05-30       Impact factor: 5.165

  2 in total

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