Literature DB >> 21587443

A one-dimensional copper(II) phenyl-ene-diphospho-nate: catena-poly[[(1,10-phenanthroline-κN,N')copper(II)]-μ(3)-[m-phenyl-enediphospho-nato-κO:O':O'']].

Paul Deburgomaster1, Jon Zubieta.   

Abstract

The title compound, [Cu(1,3-HO(3)PC(6)H(4)PO(3)H)(C(12)H(8)N(2))](n), is a coordination polymer of the metal-diphospho-nate family. The chain structure is constructed from '4+1' square-py-rami-dally coordinated copper(II) atoms bonded to chelating phenanthroline (phen) ligands and linked through 1,3-phenyldihydrogendiphospho-nate ligands. The basal plane of the Cu(II) site is defined by the phen nitro-gen donors and phospho-nate oxygen atoms from two diphospho-nate ligands, while the apical position is occupied by an oxygen donor from a third diphospho-nate ligand. The chains propagate along the a-axis direction. Inversion-related phen groups engage in π-π stacking with a mean distance of 3.376 (2) Å between the ring planes. O-H⋯O hydrogen-bonding inter-actions between the protonated {P-OH} groups of one chain and the {P=O} groups of adjacent chains stabilize the crystal packing.

Entities:  

Year:  2010        PMID: 21587443      PMCID: PMC2983280          DOI: 10.1107/S1600536810037359

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background to metal-organo­phospho­nates, see: Clearfield (1998 ▶); Finn et al. (2003 ▶); Vermeulen (1997 ▶). For copper-organo­phospho­nates, see: DeBurgomaster et al. (2010 ▶) and references therein; Arnold et al. (2002 ▶) and references therein. For our recent studies of metal-organo­phospho­nates, see: Armatas et al. (2009 ▶); Ouellette et al. (2009 ▶). For the catalytic, ion exchange, sensor and non-linear optical properties of transition metal compounds of organo­phospho­nic ligands, see: Bakmutova et al. (2008 ▶); Konar et al. (2007 ▶); Vermeulen (1997 ▶); Turner et al. (2003 ▶).

Experimental

Crystal data

[Cu(C6H6O6P2)(C12H8N2)] M = 479.79 Triclinic, a = 8.6142 (10) Å b = 9.0554 (10) Å c = 12.1094 (13) Å α = 99.688 (2)° β = 106.542 (2)° γ = 98.184 (2)° V = 874.30 (17) Å3 Z = 2 Mo Kα radiation μ = 1.48 mm−1 T = 98 K 0.35 × 0.30 × 0.21 mm

Data collection

Bruker APEX CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 1998 ▶) T min = 0.626, T max = 0.747 8704 measured reflections 4190 independent reflections 4042 reflections with I > 2σ(I) R int = 0.018

Refinement

R[F 2 > 2σ(F 2)] = 0.033 wR(F 2) = 0.087 S = 1.09 4190 reflections 262 parameters H-atom parameters constrained Δρmax = 0.71 e Å−3 Δρmin = −0.67 e Å−3 Data collection: SMART (Bruker, 1998 ▶); cell refinement: SAINT (Bruker, 1998 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: CrystalMaker (Palmer, 2006 ▶); software used to prepare material for publication: SHELXTL (Sheldrick, 2008 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536810037359/pk2259sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810037359/pk2259Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Cu(C12H8N2)(C6H6O6P2)]Z = 2
Mr = 479.79F(000) = 486
Triclinic, P1Dx = 1.823 Mg m3Dm = 1.81 (2) Mg m3Dm measured by not measured
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 8.6142 (10) ÅCell parameters from 5367 reflections
b = 9.0554 (10) Åθ = 2.3–28.4°
c = 12.1094 (13) ŵ = 1.48 mm1
α = 99.688 (2)°T = 98 K
β = 106.542 (2)°Block, blue
γ = 98.184 (2)°0.35 × 0.30 × 0.21 mm
V = 874.30 (17) Å3
Bruker APEX CCD area-detector diffractometer4190 independent reflections
Radiation source: fine-focus sealed tube4042 reflections with I > 2σ(I)
graphiteRint = 0.018
φ and ω scansθmax = 28.1°, θmin = 1.8°
Absorption correction: multi-scan (SADABS; Bruker, 1998)h = −11→11
Tmin = 0.626, Tmax = 0.747k = −11→11
8704 measured reflectionsl = −15→15
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.033Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.087H-atom parameters constrained
S = 1.09w = 1/[σ2(Fo2) + (0.0425P)2 + 1.0147P] where P = (Fo2 + 2Fc2)/3
4190 reflections(Δ/σ)max = 0.001
262 parametersΔρmax = 0.71 e Å3
0 restraintsΔρmin = −0.67 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cu10.32660 (3)0.82971 (3)0.58802 (2)0.01190 (8)
P10.32369 (6)1.03977 (6)0.85348 (4)0.01186 (11)
P2−0.33649 (6)1.05190 (6)0.64714 (4)0.01144 (11)
O10.31787 (17)1.03279 (17)0.72590 (12)0.0148 (3)
O20.33003 (18)0.88390 (17)0.88644 (13)0.0163 (3)
H20.37200.89690.95990.025*
O30.46333 (18)1.16671 (18)0.94061 (13)0.0162 (3)
O4−0.43602 (17)0.89210 (17)0.62759 (13)0.0138 (3)
O5−0.44080 (17)1.17467 (17)0.67394 (13)0.0151 (3)
H5−0.51811.13480.69560.023*
O6−0.26911 (17)1.08135 (18)0.54895 (13)0.0151 (3)
N10.0864 (2)0.7410 (2)0.55889 (15)0.0134 (3)
N20.3570 (2)0.6720 (2)0.68729 (15)0.0138 (3)
C10.1322 (2)1.0872 (2)0.86658 (17)0.0124 (4)
C2−0.0105 (2)1.0504 (2)0.76856 (17)0.0130 (4)
H2A−0.00621.00020.69430.016*
C3−0.1596 (2)1.0864 (2)0.77792 (17)0.0122 (4)
C4−0.1667 (2)1.1571 (2)0.88791 (18)0.0145 (4)
H4−0.26781.18080.89530.017*
C5−0.0249 (3)1.1930 (2)0.98692 (18)0.0160 (4)
H5A−0.02981.24041.06170.019*
C60.1235 (2)1.1592 (2)0.97584 (18)0.0143 (4)
H60.21981.18531.04310.017*
C7−0.0474 (3)0.7773 (2)0.49048 (18)0.0153 (4)
H7−0.03400.84470.44010.018*
C8−0.2076 (3)0.7190 (3)0.49042 (19)0.0184 (4)
H8−0.30070.74710.44080.022*
C9−0.2286 (3)0.6210 (3)0.56286 (19)0.0179 (4)
H9−0.33640.58120.56360.021*
C10−0.0895 (3)0.5798 (2)0.63595 (18)0.0154 (4)
C110.0661 (2)0.6437 (2)0.62948 (18)0.0134 (4)
C12−0.0956 (3)0.4795 (3)0.7153 (2)0.0187 (4)
H12−0.19940.43630.72090.022*
C130.0445 (3)0.4451 (3)0.78248 (19)0.0192 (4)
H130.03700.37980.83530.023*
C140.2038 (3)0.5059 (2)0.77509 (18)0.0165 (4)
C150.2133 (3)0.6059 (2)0.69964 (18)0.0138 (4)
C160.3533 (3)0.4700 (3)0.83802 (19)0.0194 (4)
H160.35340.40100.88910.023*
C170.4990 (3)0.5359 (3)0.82459 (19)0.0192 (4)
H170.60050.51200.86590.023*
C180.4971 (3)0.6387 (2)0.74959 (18)0.0166 (4)
H180.59880.68600.74300.020*
U11U22U33U12U13U23
Cu10.00830 (12)0.01613 (14)0.01135 (13)0.00099 (9)0.00196 (9)0.00652 (9)
P10.0083 (2)0.0170 (3)0.0100 (2)0.00289 (18)0.00145 (18)0.00446 (19)
P20.0076 (2)0.0163 (3)0.0108 (2)0.00190 (18)0.00179 (18)0.00644 (18)
O10.0121 (6)0.0218 (8)0.0115 (7)0.0033 (6)0.0042 (5)0.0056 (6)
O20.0172 (7)0.0183 (7)0.0130 (7)0.0043 (6)0.0024 (6)0.0053 (6)
O30.0107 (6)0.0199 (8)0.0160 (7)0.0019 (6)0.0014 (5)0.0044 (6)
O40.0090 (6)0.0176 (7)0.0145 (7)0.0013 (5)0.0026 (5)0.0058 (6)
O50.0109 (6)0.0186 (7)0.0172 (7)0.0041 (6)0.0038 (5)0.0080 (6)
O60.0106 (6)0.0240 (8)0.0123 (7)0.0029 (6)0.0033 (5)0.0089 (6)
N10.0130 (8)0.0138 (8)0.0129 (8)0.0012 (6)0.0035 (6)0.0039 (6)
N20.0122 (8)0.0165 (8)0.0128 (8)0.0031 (6)0.0032 (6)0.0043 (6)
C10.0102 (8)0.0153 (9)0.0126 (9)0.0028 (7)0.0028 (7)0.0063 (7)
C20.0119 (9)0.0163 (10)0.0112 (9)0.0027 (7)0.0035 (7)0.0044 (7)
C30.0094 (8)0.0153 (9)0.0113 (9)0.0006 (7)0.0020 (7)0.0053 (7)
C40.0125 (9)0.0181 (10)0.0151 (10)0.0034 (7)0.0057 (7)0.0069 (8)
C50.0161 (9)0.0202 (10)0.0122 (9)0.0036 (8)0.0051 (8)0.0041 (8)
C60.0117 (9)0.0176 (10)0.0116 (9)0.0009 (7)0.0007 (7)0.0046 (7)
C70.0138 (9)0.0169 (10)0.0142 (9)0.0024 (8)0.0029 (7)0.0043 (8)
C80.0130 (9)0.0224 (11)0.0181 (10)0.0042 (8)0.0026 (8)0.0029 (8)
C90.0125 (9)0.0200 (10)0.0196 (10)−0.0002 (8)0.0063 (8)0.0007 (8)
C100.0149 (9)0.0156 (10)0.0148 (10)−0.0004 (8)0.0062 (8)0.0010 (8)
C110.0136 (9)0.0132 (9)0.0132 (9)0.0009 (7)0.0049 (7)0.0023 (7)
C120.0192 (10)0.0183 (10)0.0195 (10)−0.0012 (8)0.0101 (8)0.0041 (8)
C130.0248 (11)0.0171 (10)0.0166 (10)−0.0012 (8)0.0092 (8)0.0060 (8)
C140.0207 (10)0.0139 (10)0.0143 (10)0.0014 (8)0.0055 (8)0.0035 (8)
C150.0152 (9)0.0139 (9)0.0119 (9)0.0018 (7)0.0040 (7)0.0030 (7)
C160.0257 (11)0.0178 (10)0.0148 (10)0.0056 (9)0.0041 (8)0.0073 (8)
C170.0201 (10)0.0207 (11)0.0158 (10)0.0069 (8)0.0018 (8)0.0061 (8)
C180.0148 (9)0.0186 (10)0.0153 (10)0.0034 (8)0.0034 (8)0.0033 (8)
Cu1—O6i1.9339 (15)C4—C51.399 (3)
Cu1—O4ii1.9371 (14)C4—H40.9500
Cu1—N22.0142 (18)C5—C61.393 (3)
Cu1—N12.0166 (17)C5—H5A0.9500
Cu1—O12.2918 (15)C6—H60.9500
P1—O11.5215 (15)C7—C81.406 (3)
P1—O21.5341 (16)C7—H70.9500
P1—O31.5352 (16)C8—C91.377 (3)
P1—C11.805 (2)C8—H80.9500
P2—O61.5092 (15)C9—C101.411 (3)
P2—O41.5169 (15)C9—H90.9500
P2—O51.5741 (15)C10—C111.411 (3)
P2—C31.803 (2)C10—C121.435 (3)
O2—H20.8400C11—C151.433 (3)
O4—Cu1iii1.9371 (14)C12—C131.360 (3)
O5—H50.8400C12—H120.9500
O6—Cu1i1.9340 (15)C13—C141.437 (3)
N1—C71.333 (3)C13—H130.9500
N1—C111.354 (3)C14—C151.400 (3)
N2—C181.333 (3)C14—C161.410 (3)
N2—C151.356 (3)C16—C171.376 (3)
C1—C21.396 (3)C16—H160.9500
C1—C61.401 (3)C17—C181.404 (3)
C2—C31.400 (3)C17—H170.9500
C2—H2A0.9500C18—H180.9500
C3—C41.399 (3)
O6i—Cu1—O4ii96.46 (6)C3—C4—H4120.0
O6i—Cu1—N2160.52 (7)C6—C5—C4120.02 (19)
O4ii—Cu1—N290.51 (7)C6—C5—H5A120.0
O6i—Cu1—N190.87 (7)C4—C5—H5A120.0
O4ii—Cu1—N1171.94 (7)C5—C6—C1120.71 (19)
N2—Cu1—N181.49 (7)C5—C6—H6119.6
O6i—Cu1—O198.12 (6)C1—C6—H6119.6
O4ii—Cu1—O191.46 (6)N1—C7—C8122.1 (2)
N2—Cu1—O199.88 (6)N1—C7—H7118.9
N1—Cu1—O190.82 (6)C8—C7—H7118.9
O1—P1—O2111.95 (9)C9—C8—C7119.4 (2)
O1—P1—O3112.39 (9)C9—C8—H8120.3
O2—P1—O3112.01 (9)C7—C8—H8120.3
O1—P1—C1107.19 (9)C8—C9—C10119.79 (19)
O2—P1—C1106.22 (9)C8—C9—H9120.1
O3—P1—C1106.62 (9)C10—C9—H9120.1
O6—P2—O4115.35 (9)C11—C10—C9116.6 (2)
O6—P2—O5110.16 (8)C11—C10—C12118.5 (2)
O4—P2—O5110.15 (8)C9—C10—C12124.91 (19)
O6—P2—C3106.07 (9)N1—C11—C10123.45 (19)
O4—P2—C3109.09 (9)N1—C11—C15116.48 (18)
O5—P2—C3105.48 (9)C10—C11—C15120.06 (19)
P1—O1—Cu1128.96 (9)C13—C12—C10121.23 (19)
P1—O2—H2109.5C13—C12—H12119.4
P2—O4—Cu1iii127.78 (9)C10—C12—H12119.4
P2—O5—H5109.5C12—C13—C14121.2 (2)
P2—O6—Cu1i138.73 (9)C12—C13—H13119.4
C7—N1—C11118.57 (18)C14—C13—H13119.4
C7—N1—Cu1128.72 (15)C15—C14—C16117.0 (2)
C11—N1—Cu1112.34 (13)C15—C14—C13118.7 (2)
C18—N2—C15118.12 (18)C16—C14—C13124.3 (2)
C18—N2—Cu1128.83 (15)N2—C15—C14123.71 (19)
C15—N2—Cu1112.63 (13)N2—C15—C11115.95 (18)
C2—C1—C6118.83 (18)C14—C15—C11120.34 (19)
C2—C1—P1120.67 (15)C17—C16—C14119.2 (2)
C6—C1—P1120.50 (15)C17—C16—H16120.4
C1—C2—C3121.07 (18)C14—C16—H16120.4
C1—C2—H2A119.5C16—C17—C18119.7 (2)
C3—C2—H2A119.5C16—C17—H17120.1
C4—C3—C2119.43 (18)C18—C17—H17120.1
C4—C3—P2120.71 (15)N2—C18—C17122.1 (2)
C2—C3—P2119.75 (15)N2—C18—H18118.9
C5—C4—C3119.92 (18)C17—C18—H18118.9
C5—C4—H4120.0
O2—P1—O1—Cu1−2.35 (13)C2—C3—C4—C50.9 (3)
O3—P1—O1—Cu1124.73 (10)P2—C3—C4—C5−175.41 (16)
C1—P1—O1—Cu1−118.45 (11)C3—C4—C5—C60.4 (3)
O6i—Cu1—O1—P1169.38 (10)C4—C5—C6—C1−1.0 (3)
O4ii—Cu1—O1—P1−93.88 (11)C2—C1—C6—C50.4 (3)
N2—Cu1—O1—P1−3.11 (12)P1—C1—C6—C5−178.59 (16)
N1—Cu1—O1—P178.39 (11)C11—N1—C7—C80.7 (3)
O6—P2—O4—Cu1iii−106.17 (11)Cu1—N1—C7—C8−171.75 (16)
O5—P2—O4—Cu1iii19.28 (13)N1—C7—C8—C9−0.1 (3)
C3—P2—O4—Cu1iii134.62 (11)C7—C8—C9—C10−0.2 (3)
O4—P2—O6—Cu1i97.16 (15)C8—C9—C10—C11−0.1 (3)
O5—P2—O6—Cu1i−28.29 (17)C8—C9—C10—C12179.7 (2)
C3—P2—O6—Cu1i−141.97 (14)C7—N1—C11—C10−1.0 (3)
O6i—Cu1—N1—C7−16.18 (18)Cu1—N1—C11—C10172.65 (16)
N2—Cu1—N1—C7−178.19 (19)C7—N1—C11—C15178.83 (18)
O1—Cu1—N1—C781.95 (18)Cu1—N1—C11—C15−7.6 (2)
O6i—Cu1—N1—C11171.00 (14)C9—C10—C11—N10.7 (3)
N2—Cu1—N1—C119.00 (14)C12—C10—C11—N1−179.16 (19)
O1—Cu1—N1—C11−90.87 (14)C9—C10—C11—C15−179.11 (18)
O6i—Cu1—N2—C18110.8 (2)C12—C10—C11—C151.0 (3)
O4ii—Cu1—N2—C18−0.45 (18)C11—C10—C12—C13−0.4 (3)
N1—Cu1—N2—C18178.63 (19)C9—C10—C12—C13179.7 (2)
O1—Cu1—N2—C18−92.02 (18)C10—C12—C13—C14−1.1 (3)
O6i—Cu1—N2—C15−76.9 (2)C12—C13—C14—C152.0 (3)
O4ii—Cu1—N2—C15171.83 (14)C12—C13—C14—C16−177.0 (2)
N1—Cu1—N2—C15−9.08 (14)C18—N2—C15—C140.7 (3)
O1—Cu1—N2—C1580.27 (14)Cu1—N2—C15—C14−172.44 (16)
O1—P1—C1—C226.20 (19)C18—N2—C15—C11−179.11 (18)
O2—P1—C1—C2−93.64 (17)Cu1—N2—C15—C117.7 (2)
O3—P1—C1—C2146.75 (16)C16—C14—C15—N2−2.1 (3)
O1—P1—C1—C6−154.87 (16)C13—C14—C15—N2178.79 (19)
O2—P1—C1—C685.30 (18)C16—C14—C15—C11177.76 (19)
O3—P1—C1—C6−34.31 (19)C13—C14—C15—C11−1.4 (3)
C6—C1—C2—C30.9 (3)N1—C11—C15—N2−0.1 (3)
P1—C1—C2—C3179.87 (16)C10—C11—C15—N2179.72 (18)
C1—C2—C3—C4−1.5 (3)N1—C11—C15—C14−179.95 (18)
C1—C2—C3—P2174.77 (16)C10—C11—C15—C14−0.1 (3)
O6—P2—C3—C4141.91 (17)C15—C14—C16—C171.3 (3)
O4—P2—C3—C4−93.26 (18)C13—C14—C16—C17−179.6 (2)
O5—P2—C3—C425.05 (19)C14—C16—C17—C180.6 (3)
O6—P2—C3—C2−34.34 (19)C15—N2—C18—C171.3 (3)
O4—P2—C3—C290.49 (17)Cu1—N2—C18—C17173.27 (16)
O5—P2—C3—C2−151.21 (16)C16—C17—C18—N2−2.0 (3)
D—H···AD—HH···AD···AD—H···A
O2—H2···O3iv0.841.812.489 (2)136
O5—H5···O1iii0.841.742.574 (2)173
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O2—H2⋯O3i0.841.812.489 (2)136
O5—H5⋯O1ii0.841.742.574 (2)173

Symmetry codes: (i) ; (ii) .

  5 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Cobalt phosphonates: an unusual polymeric cobalt phosphonate containing a clathrated phosphonate anion and a layered bisphosphonate.

Authors:  Ekaterina V Bakhmutova; Xiang Ouyang; Dmitri G Medvedev; Abraham Clearfield
Journal:  Inorg Chem       Date:  2003-11-03       Impact factor: 5.165

3.  The hydrothermal and structural chemistry of oxovanadium-arylphosphonate networks and frameworks.

Authors:  Wayne Ouellette; Guangbin Wang; Hongxue Liu; Gordon T Yee; Charles J O'Connor; Jon Zubieta
Journal:  Inorg Chem       Date:  2009-02-02       Impact factor: 5.165

4.  Synthesis and characterization of four metal-organophosphonates with one-, two-, and three-dimensional structures.

Authors:  Sanjit Konar; Jerzy Zoń; Andrey V Prosvirin; Kim R Dunbar; Abraham Clearfield
Journal:  Inorg Chem       Date:  2007-06-01       Impact factor: 5.165

5.  Construction of metal-organic oxides from molybdophosphonate clusters and copper-bipyrimidine building blocks.

Authors:  N Gabriel Armatas; Wayne Ouellette; Kelly Whitenack; Joshua Pelcher; Hongxue Liu; Erin Romaine; Charles J O'Connor; Jon Zubieta
Journal:  Inorg Chem       Date:  2009-09-21       Impact factor: 5.165

  5 in total

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