Literature DB >> 21587440

catena-Poly[[[dipyridine-copper(II)]-μ-2,3,5,6-tetra-methyl-benzene-1,4-di-carboxyl-ato] monohydrate].

Xiaoqin Hu1.   

Abstract

In the title complex, {[Cu(C(12)H(12)O(4))(C(5)n class="Species">H(5)N)(2)]·H(2)O}(n), the Cu(II) ion lies on an inversion center and is coordinated by two O atoms from two 2,3,5,6-tetra-methyl-benzene-1,4-dicarboxyl-ate (TBDC) ligands and two N atoms from two pyridine ligands in a slightly distorted square-planar environment. The TBDC ligands act as bridging ligands, forming chains along [110]. These chains are further linked into a two-dimensional network via inter-molecular O-H⋯O hydrogen bonds. The solvent water mol-ecule lies on a twofold rotation axis.

Entities:  

Year:  2010        PMID: 21587440      PMCID: PMC2983187          DOI: 10.1107/S1600536810036913

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related structures, see: Chun et al. (2005 ▶); Diniz et al. (2002 ▶).

Experimental

Crystal data

[Cu(C12H12O4)(C5H5n class="Chemical">N)2]·H2O M = 459.98 Monoclinic, a = 13.3280 (8) Å b = 17.1434 (11) Å c = 10.7390 (7) Å β = 108.481 (1)° V = 2327.2 (3) Å3 Z = 4 Mo Kα radiation μ = 0.97 mm−1 T = 298 K 0.15 × 0.10 × 0.08 mm

Data collection

Bruker SMART CCD diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.868, T max = 0.926 6747 measured reflections 2594 independent reflections 2283 reflections with I > 2σ(I) R int = 0.017

Refinement

R[F 2 > 2σ(F 2)] = 0.029 wR(F 2) = 0.086 S = 1.06 2594 reflections 142 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.34 e Å−3 Δρmin = −0.31 e Å−3 Data collection: SMART (Bruker, 2007 ▶); cell refinement: SAINT-Plus (Bruker, 2007 ▶); data reduction: SAIn class="Chemical">NT-Plus; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶) and PLATON (Spek, 2009 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810036913/lh5099sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810036913/lh5099Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Cu(C12H12O4)(C5H5N)2]·H2OF(000) = 956
Mr = 459.98Dx = 1.313 Mg m3
Monoclinic, C2/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -C 2ycCell parameters from 3713 reflections
a = 13.3280 (8) Åθ = 2.4–27.5°
b = 17.1434 (11) ŵ = 0.97 mm1
c = 10.7390 (7) ÅT = 298 K
β = 108.481 (1)°Block, blue
V = 2327.2 (3) Å30.15 × 0.10 × 0.08 mm
Z = 4
Bruker SMART CCD diffractometer2594 independent reflections
Radiation source: fine-focus sealed tube2283 reflections with I > 2σ(I)
graphiteRint = 0.017
φ and ω scansθmax = 27.5°, θmin = 2.4°
Absorption correction: multi-scan (SADBAS; Sheldrick, 1996)h = −17→10
Tmin = 0.868, Tmax = 0.926k = −19→21
6747 measured reflectionsl = −10→13
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.029Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.086H atoms treated by a mixture of independent and constrained refinement
S = 1.06w = 1/[σ2(Fo2) + (0.0467P)2 + 1.775P] where P = (Fo2 + 2Fc2)/3
2594 reflections(Δ/σ)max < 0.001
142 parametersΔρmax = 0.34 e Å3
0 restraintsΔρmin = −0.31 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cu10.00000.00000.00000.02763 (11)
O20.07772 (9)0.07930 (7)−0.06903 (12)0.0326 (3)
N1−0.12716 (11)0.06855 (8)−0.04454 (14)0.0313 (3)
O10.10913 (11)0.10867 (8)0.14011 (13)0.0418 (3)
C10.12054 (13)0.12134 (9)0.03160 (17)0.0294 (3)
C20.18792 (13)0.18884 (9)0.01433 (16)0.0289 (3)
C30.13967 (13)0.25988 (10)−0.03235 (17)0.0312 (4)
C50.29738 (13)0.17762 (10)0.04732 (17)0.0315 (4)
C11−0.17376 (16)0.08364 (12)0.0463 (2)0.0416 (4)
H11−0.14550.06190.12940.050*
C7−0.16747 (16)0.10076 (13)−0.1635 (2)0.0451 (5)
H7−0.13520.0910−0.22700.054*
C40.02162 (15)0.26957 (12)−0.0624 (2)0.0474 (5)
H4A−0.00850.2213−0.04620.071*
H4B−0.00970.2840−0.15280.071*
H4C0.00810.3096−0.00730.071*
C60.34512 (16)0.09915 (12)0.0956 (3)0.0512 (5)
H6A0.29040.06400.10010.077*
H6B0.39610.10480.18130.077*
H6C0.37930.07880.03610.077*
C9−0.3036 (2)0.16249 (18)−0.1002 (3)0.0691 (7)
H9−0.36360.1938−0.11930.083*
C10−0.2619 (2)0.13013 (15)0.0210 (3)0.0598 (6)
H10−0.29280.13940.08610.072*
C8−0.2556 (2)0.14817 (16)−0.1942 (2)0.0634 (7)
H8−0.28230.1702−0.27740.076*
O010.00000.21858 (15)0.25000.0601 (6)
H1A0.040 (2)0.1861 (19)0.216 (3)0.094 (11)*
U11U22U33U12U13U23
Cu10.02676 (16)0.02207 (16)0.03625 (18)−0.00754 (10)0.01309 (12)0.00071 (10)
O20.0348 (6)0.0276 (6)0.0381 (7)−0.0120 (5)0.0153 (5)−0.0013 (5)
N10.0316 (7)0.0265 (7)0.0372 (8)−0.0057 (6)0.0128 (6)−0.0004 (6)
O10.0521 (8)0.0389 (7)0.0396 (7)−0.0136 (6)0.0222 (6)0.0006 (6)
C10.0286 (8)0.0235 (8)0.0385 (9)−0.0048 (6)0.0140 (7)0.0024 (6)
C20.0308 (8)0.0242 (8)0.0332 (8)−0.0089 (6)0.0121 (6)−0.0012 (6)
C30.0280 (8)0.0278 (8)0.0382 (9)−0.0059 (6)0.0113 (7)0.0009 (7)
C50.0307 (8)0.0245 (8)0.0400 (9)−0.0049 (6)0.0120 (7)0.0023 (7)
C110.0478 (11)0.0397 (10)0.0400 (10)0.0014 (8)0.0180 (8)0.0000 (8)
C70.0462 (11)0.0508 (12)0.0397 (10)0.0010 (9)0.0154 (8)0.0041 (9)
C40.0315 (9)0.0413 (11)0.0705 (14)−0.0024 (8)0.0178 (9)0.0140 (10)
C60.0395 (10)0.0303 (10)0.0824 (16)−0.0018 (8)0.0175 (10)0.0143 (10)
C90.0547 (14)0.0729 (18)0.0800 (18)0.0285 (13)0.0219 (13)0.0116 (14)
C100.0622 (14)0.0614 (15)0.0669 (15)0.0164 (12)0.0364 (12)0.0021 (12)
C80.0574 (14)0.0753 (17)0.0524 (13)0.0182 (12)0.0102 (11)0.0181 (12)
O010.0687 (16)0.0490 (14)0.0683 (15)0.0000.0296 (13)0.000
Cu1—O21.9894 (11)C11—H110.9300
Cu1—O2i1.9894 (11)C7—C81.380 (3)
Cu1—N11.9920 (15)C7—H70.9300
Cu1—N1i1.9921 (15)C4—H4A0.9600
O2—C11.273 (2)C4—H4B0.9600
N1—C111.337 (2)C4—H4C0.9600
N1—C71.338 (3)C6—H6A0.9600
O1—C11.241 (2)C6—H6B0.9600
C1—C21.512 (2)C6—H6C0.9600
C2—C31.394 (2)C9—C101.361 (4)
C2—C51.401 (2)C9—C81.377 (4)
C3—C5ii1.401 (2)C9—H90.9300
C3—C41.512 (2)C10—H100.9300
C5—C3ii1.401 (2)C8—H80.9300
C5—C61.508 (3)O01—H1A0.92 (3)
C11—C101.374 (3)
O2—Cu1—O2i180.00 (6)N1—C7—C8121.7 (2)
O2—Cu1—N190.64 (5)N1—C7—H7119.1
O2i—Cu1—N189.36 (5)C8—C7—H7119.1
O2—Cu1—N1i89.36 (5)C3—C4—H4A109.5
O2i—Cu1—N1i90.65 (5)C3—C4—H4B109.5
N1—Cu1—N1i180.0H4A—C4—H4B109.5
C1—O2—Cu1102.52 (10)C3—C4—H4C109.5
C11—N1—C7118.53 (17)H4A—C4—H4C109.5
C11—N1—Cu1119.71 (13)H4B—C4—H4C109.5
C7—N1—Cu1121.76 (13)C5—C6—H6A109.5
O1—C1—O2122.84 (15)C5—C6—H6B109.5
O1—C1—C2120.22 (15)H6A—C6—H6B109.5
O2—C1—C2116.93 (14)C5—C6—H6C109.5
C3—C2—C5122.37 (14)H6A—C6—H6C109.5
C3—C2—C1119.25 (14)H6B—C6—H6C109.5
C5—C2—C1118.37 (15)C10—C9—C8119.0 (2)
C2—C3—C5ii118.98 (15)C10—C9—H9120.5
C2—C3—C4120.19 (15)C8—C9—H9120.5
C5ii—C3—C4120.80 (16)C9—C10—C11119.3 (2)
C2—C5—C3ii118.64 (15)C9—C10—H10120.4
C2—C5—C6120.10 (15)C11—C10—H10120.4
C3ii—C5—C6121.25 (16)C9—C8—C7119.2 (2)
N1—C11—C10122.3 (2)C9—C8—H8120.4
N1—C11—H11118.9C7—C8—H8120.4
C10—C11—H11118.9
O2i—Cu1—O2—C193.10 (11)C1—C2—C3—C5ii179.58 (16)
N1—Cu1—O2—C189.16 (11)C5—C2—C3—C4−178.05 (18)
N1i—Cu1—O2—C1−90.84 (11)C3—C2—C5—C3ii−0.2 (3)
O2—Cu1—N1—C11−129.39 (14)C1—C2—C5—C3ii−179.59 (16)
O2i—Cu1—N1—C1150.61 (14)C3—C2—C5—C6−179.15 (18)
O2—Cu1—N1—C750.15 (15)C1—C2—C5—C61.5 (3)
O2i—Cu1—N1—C7−129.85 (15)C7—N1—C11—C100.8 (3)
Cu1—O2—C1—O1−0.1 (2)Cu1—N1—C11—C10−179.66 (18)
Cu1—O2—C1—C2179.68 (12)C11—N1—C7—C8−0.5 (3)
O1—C1—C2—C3−94.9 (2)Cu1—N1—C7—C8179.92 (18)
O2—C1—C2—C385.3 (2)C8—C9—C10—C11−0.5 (4)
O1—C1—C2—C584.5 (2)N1—C11—C10—C9−0.3 (4)
O2—C1—C2—C5−95.3 (2)C10—C9—C8—C70.7 (4)
C5—C2—C3—C5ii0.2 (3)N1—C7—C8—C9−0.2 (4)
D—H···AD—HH···AD···AD—H···A
O01—H1A···O10.92 (3)1.93 (3)2.854 (2)173 (3)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O01—H1A⋯O10.92 (3)1.93 (3)2.854 (2)173 (3)
  3 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Synthesis, X-ray crystal structures, and gas sorption properties of pillared square grid nets based on paddle-wheel motifs: implications for hydrogen storage in porous materials.

Authors:  Hyungphil Chun; Danil N Dybtsev; Hyunuk Kim; Kimoon Kim
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3.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
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  3 in total

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