Literature DB >> 21587418

{N,N-Dimethyl-N'-[1-(2-pyrid-yl)ethyl-idene]propane-1,3-diamine}bis(thio-cyanato-κN)-copper(II).

Ling-Wei Xue1, Gan-Qing Zhao, Yong-Jun Han, Li-Hua Chen, Qin-Long Peng.   

Abstract

In the title complex, [Cu(NCS)(2)(C(12)H(19)N(3))], the Cu(II) atom is five-coordinated in a square-pyramidal geometry defined by one pyridine N, one imine N, and one amine N atom of the tridentate Schiff base ligand and two N-bonded thio-cyanate ions (one of the latter occupying the apical site). The three bridging C atoms and the two terminal C atoms of the Schiff base are disordered over two sets of sites, with occupancies of 0.465 (2) and 0.535 (2).

Entities:  

Year:  2010        PMID: 21587418      PMCID: PMC2983150          DOI: 10.1107/S1600536810036378

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For a related structure and background to Schiff bases, see: Xue et al. (2010 ▶).

Experimental

Crystal data

[Cu(NCS)2(C12H19N3)] M = 385.00 Monoclinic, a = 13.723 (2) Å b = 7.2380 (12) Å c = 18.237 (3) Å β = 103.559 (2)° V = 1760.9 (5) Å3 Z = 4 Mo Kα radiation μ = 1.48 mm−1 T = 298 K 0.23 × 0.21 × 0.21 mm

Data collection

Bruker SMART CCD diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.727, T max = 0.746 13886 measured reflections 3816 independent reflections 2698 reflections with I > 2σ(I) R int = 0.041

Refinement

R[F 2 > 2σ(F 2)] = 0.042 wR(F 2) = 0.111 S = 1.04 3816 reflections 237 parameters 16 restraints H-atom parameters constrained Δρmax = 0.57 e Å−3 Δρmin = −0.47 e Å−3 Data collection: SMART (Bruker, 1998 ▶); cell refinement: SAINT (Bruker, 1998 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810036378/hb5636sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810036378/hb5636Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Cu(NCS)2(C12H19N3)]F(000) = 796
Mr = 385.00Dx = 1.452 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 2747 reflections
a = 13.723 (2) Åθ = 2.3–24.5°
b = 7.2380 (12) ŵ = 1.48 mm1
c = 18.237 (3) ÅT = 298 K
β = 103.559 (2)°Block, blue
V = 1760.9 (5) Å30.23 × 0.21 × 0.21 mm
Z = 4
Bruker SMART CCD diffractometer3816 independent reflections
Radiation source: fine-focus sealed tube2698 reflections with I > 2σ(I)
graphiteRint = 0.041
ω scansθmax = 27.0°, θmin = 2.3°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −15→17
Tmin = 0.727, Tmax = 0.746k = −9→9
13886 measured reflectionsl = −23→23
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.042Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.111H-atom parameters constrained
S = 1.03w = 1/[σ2(Fo2) + (0.0492P)2 + 0.6842P] where P = (Fo2 + 2Fc2)/3
3816 reflections(Δ/σ)max < 0.001
237 parametersΔρmax = 0.57 e Å3
16 restraintsΔρmin = −0.47 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
Cu10.24814 (3)0.82783 (5)0.39009 (2)0.04378 (15)
N10.3853 (2)0.8651 (4)0.36614 (15)0.0459 (7)
N20.2846 (2)1.0789 (4)0.43585 (14)0.0457 (6)
N40.2763 (2)0.7053 (4)0.50065 (18)0.0594 (8)
N50.2289 (2)0.5969 (5)0.33292 (18)0.0624 (8)
S10.2253 (2)0.6298 (3)0.63328 (10)0.1725 (10)
S20.23557 (7)0.28351 (14)0.24673 (6)0.0611 (3)
C10.4337 (3)0.7542 (6)0.3285 (2)0.0647 (10)
H10.40280.64460.30900.078*
C20.5270 (3)0.7936 (7)0.3170 (2)0.0752 (13)
H20.55840.71240.29040.090*
C30.5724 (3)0.9539 (7)0.3454 (2)0.0716 (12)
H30.63580.98350.33880.086*
C40.5236 (3)1.0714 (6)0.3839 (2)0.0601 (10)
H40.55331.18210.40320.072*
C50.4300 (2)1.0238 (5)0.39356 (17)0.0443 (7)
C60.3702 (2)1.1400 (4)0.43399 (18)0.0452 (8)
C70.4155 (3)1.3171 (5)0.4690 (2)0.0701 (12)
H7A0.40901.41040.43070.105*
H7B0.48511.29790.49210.105*
H7C0.38121.35630.50650.105*
N30.0939 (2)0.8665 (4)0.36804 (17)0.0606 (8)0.465 (11)
C80.2202 (3)1.1843 (5)0.4750 (2)0.0684 (11)0.465 (11)
H8A0.21161.30770.45380.082*0.465 (11)
H8B0.25491.19610.52760.082*0.465 (11)
C90.1197 (6)1.1045 (16)0.4713 (5)0.062 (3)0.465 (11)
H9A0.07971.19120.49240.074*0.465 (11)
H9B0.12630.99180.50090.074*0.465 (11)
C100.0677 (7)1.0625 (13)0.3896 (5)0.056 (3)0.465 (11)
H10A0.08861.15170.35660.067*0.465 (11)
H10B−0.00431.07310.38300.067*0.465 (11)
C110.053 (3)0.696 (4)0.396 (2)0.092 (10)0.465 (11)
H11A−0.01850.70580.38730.138*0.465 (11)
H11B0.08120.68380.44960.138*0.465 (11)
H11C0.07050.59030.37050.138*0.465 (11)
C120.066 (3)0.888 (6)0.2842 (6)0.071 (8)0.465 (11)
H12A−0.00530.90540.26780.107*0.465 (11)
H12B0.08490.77890.26110.107*0.465 (11)
H12C0.09980.99310.27000.107*0.465 (11)
N3'0.0939 (2)0.8665 (4)0.36804 (17)0.0606 (8)0.535 (11)
C8'0.2202 (3)1.1843 (5)0.4750 (2)0.0684 (11)0.535 (11)
H8'A0.24151.31240.48030.082*0.535 (11)
H8'B0.22521.13360.52500.082*0.535 (11)
C9'0.1099 (5)1.1713 (11)0.4277 (7)0.077 (3)0.535 (11)
H9'A0.07031.25950.44840.093*0.535 (11)
H9'B0.10911.21120.37680.093*0.535 (11)
C10'0.0573 (6)0.9862 (12)0.4224 (6)0.069 (3)0.535 (11)
H10C0.07110.92780.47170.082*0.535 (11)
H10D−0.01451.00350.40550.082*0.535 (11)
C11'0.036 (2)0.703 (3)0.3837 (17)0.071 (5)0.535 (11)
H11D−0.03460.73310.37200.106*0.535 (11)
H11E0.05690.67020.43600.106*0.535 (11)
H11F0.04670.60090.35310.106*0.535 (11)
C12'0.052 (3)0.896 (5)0.2860 (6)0.071 (7)0.535 (11)
H12D−0.01970.91330.27700.106*0.535 (11)
H12E0.06530.79000.25840.106*0.535 (11)
H12F0.08151.00350.26970.106*0.535 (11)
C130.2546 (3)0.6730 (5)0.5551 (2)0.0572 (9)
C140.2316 (2)0.4674 (5)0.29685 (19)0.0481 (8)
U11U22U33U12U13U23
Cu10.0369 (2)0.0457 (2)0.0496 (2)−0.00511 (18)0.01183 (16)−0.00953 (18)
N10.0412 (15)0.0515 (17)0.0463 (15)−0.0058 (12)0.0131 (12)−0.0059 (12)
N20.0448 (16)0.0426 (16)0.0496 (15)0.0014 (13)0.0109 (12)−0.0037 (12)
N40.066 (2)0.057 (2)0.0533 (18)−0.0049 (15)0.0097 (15)0.0003 (15)
N50.0559 (19)0.0598 (19)0.072 (2)−0.0085 (16)0.0162 (16)−0.0233 (17)
S10.264 (3)0.178 (2)0.1026 (12)−0.0650 (18)0.0974 (15)0.0160 (12)
S20.0560 (6)0.0568 (6)0.0762 (6)−0.0069 (4)0.0269 (5)−0.0187 (5)
C10.055 (2)0.078 (3)0.064 (2)−0.011 (2)0.0212 (19)−0.025 (2)
C20.051 (2)0.107 (4)0.075 (3)−0.005 (2)0.031 (2)−0.023 (2)
C30.042 (2)0.106 (4)0.071 (3)−0.012 (2)0.0205 (19)0.002 (2)
C40.045 (2)0.069 (3)0.064 (2)−0.0139 (19)0.0068 (17)0.003 (2)
C50.0366 (17)0.0494 (19)0.0435 (17)−0.0030 (15)0.0024 (13)0.0060 (15)
C60.0428 (19)0.0389 (18)0.0486 (18)−0.0020 (14)0.0004 (14)0.0025 (14)
C70.062 (2)0.046 (2)0.093 (3)−0.0065 (19)−0.001 (2)−0.012 (2)
N30.0378 (16)0.073 (2)0.069 (2)−0.0027 (15)0.0079 (14)−0.0122 (17)
C80.069 (3)0.059 (2)0.079 (3)0.009 (2)0.023 (2)−0.021 (2)
C90.062 (6)0.061 (7)0.078 (7)0.003 (5)0.047 (5)−0.009 (5)
C100.034 (5)0.066 (7)0.072 (6)0.017 (4)0.019 (4)0.007 (5)
C110.019 (8)0.155 (18)0.096 (19)−0.026 (9)0.003 (9)0.037 (10)
C120.032 (9)0.105 (17)0.065 (12)−0.007 (8)−0.012 (8)0.027 (10)
N3'0.0378 (16)0.073 (2)0.069 (2)−0.0027 (15)0.0079 (14)−0.0122 (17)
C8'0.069 (3)0.059 (2)0.079 (3)0.009 (2)0.023 (2)−0.021 (2)
C9'0.067 (6)0.058 (6)0.126 (10)0.003 (4)0.061 (7)−0.008 (6)
C10'0.058 (5)0.074 (6)0.083 (7)0.005 (4)0.034 (5)0.001 (5)
C11'0.038 (12)0.120 (12)0.053 (6)−0.007 (6)0.007 (8)0.019 (6)
C12'0.050 (13)0.061 (10)0.100 (15)−0.006 (7)0.013 (8)0.010 (9)
C130.066 (2)0.043 (2)0.061 (2)−0.0099 (18)0.0108 (19)0.0024 (18)
C140.0348 (17)0.054 (2)0.0550 (19)−0.0070 (15)0.0103 (14)−0.0051 (17)
Cu1—N51.955 (3)N3—C111.494 (9)
Cu1—N22.013 (3)N3—C101.537 (7)
Cu1—N12.047 (3)C8—C91.483 (7)
Cu1—N32.078 (3)C8—H8A0.9700
Cu1—N42.153 (3)C8—H8B0.9700
N1—C11.331 (4)C9—C101.525 (9)
N1—C51.343 (4)C9—H9A0.9700
N2—C61.264 (4)C9—H9B0.9700
N2—C81.472 (4)C10—H10A0.9700
N4—C131.126 (4)C10—H10B0.9700
N5—C141.151 (4)C11—H11A0.9600
S1—C131.600 (4)C11—H11B0.9600
S2—C141.622 (4)C11—H11C0.9600
C1—C21.375 (5)C12—H12A0.9600
C1—H10.9300C12—H12B0.9600
C2—C31.361 (6)C12—H12C0.9600
C2—H20.9300C9'—C10'1.514 (9)
C3—C41.373 (5)C9'—H9'A0.9700
C3—H30.9300C9'—H9'B0.9700
C4—C51.380 (5)C10'—H10C0.9700
C4—H40.9300C10'—H10D0.9700
C5—C61.486 (5)C11'—H11D0.9600
C6—C71.500 (4)C11'—H11E0.9600
C7—H7A0.9600C11'—H11F0.9600
C7—H7B0.9600C12'—H12D0.9600
C7—H7C0.9600C12'—H12E0.9600
N3—C121.494 (9)C12'—H12F0.9600
N5—Cu1—N2169.17 (12)C11—N3—Cu1105.6 (16)
N5—Cu1—N190.84 (12)C10—N3—Cu1111.3 (4)
N2—Cu1—N179.51 (11)N2—C8—C9115.7 (4)
N5—Cu1—N390.46 (12)N2—C8—H8A108.3
N2—Cu1—N395.82 (11)C9—C8—H8A108.3
N1—Cu1—N3152.40 (12)N2—C8—H8B108.3
N5—Cu1—N496.85 (13)C9—C8—H8B108.3
N2—Cu1—N490.64 (11)H8A—C8—H8B107.4
N1—Cu1—N4106.39 (12)C8—C9—C10109.8 (7)
N3—Cu1—N4100.82 (12)C8—C9—H9A109.7
C1—N1—C5117.9 (3)C10—C9—H9A109.7
C1—N1—Cu1128.7 (3)C8—C9—H9B109.7
C5—N1—Cu1113.4 (2)C10—C9—H9B109.7
C6—N2—C8119.9 (3)H9A—C9—H9B108.2
C6—N2—Cu1116.6 (2)C9—C10—N3110.5 (7)
C8—N2—Cu1123.3 (2)C9—C10—H10A109.5
C13—N4—Cu1152.2 (3)N3—C10—H10A109.5
C14—N5—Cu1169.4 (3)C9—C10—H10B109.5
N1—C1—C2123.3 (4)N3—C10—H10B109.5
N1—C1—H1118.4H10A—C10—H10B108.1
C2—C1—H1118.4N3—C11—H11A109.5
C3—C2—C1118.6 (4)N3—C11—H11B109.5
C3—C2—H2120.7H11A—C11—H11B109.5
C1—C2—H2120.7N3—C11—H11C109.5
C2—C3—C4119.2 (4)H11A—C11—H11C109.5
C2—C3—H3120.4H11B—C11—H11C109.5
C4—C3—H3120.4N3—C12—H12A109.5
C3—C4—C5119.4 (4)N3—C12—H12B109.5
C3—C4—H4120.3H12A—C12—H12B109.5
C5—C4—H4120.3N3—C12—H12C109.5
N1—C5—C4121.6 (3)H12A—C12—H12C109.5
N1—C5—C6114.3 (3)H12B—C12—H12C109.5
C4—C5—C6124.1 (3)C10'—C9'—H9'A107.7
N2—C6—C5116.1 (3)C10'—C9'—H9'B107.7
N2—C6—C7125.6 (3)H9'A—C9'—H9'B107.1
C5—C6—C7118.3 (3)C9'—C10'—H10C109.9
C6—C7—H7A109.5C9'—C10'—H10D109.9
C6—C7—H7B109.5H10C—C10'—H10D108.3
H7A—C7—H7B109.5H11D—C11'—H11E109.5
C6—C7—H7C109.5H11D—C11'—H11F109.5
H7A—C7—H7C109.5H11E—C11'—H11F109.5
H7B—C7—H7C109.5H12D—C12'—H12E109.5
C12—N3—C11114 (2)H12D—C12'—H12F109.5
C12—N3—C1098.4 (18)H12E—C12'—H12F109.5
C11—N3—C10122.9 (19)N4—C13—S1178.9 (4)
C12—N3—Cu1102.7 (18)N5—C14—S2179.4 (3)
Table 1

Selected bond lengths (Å)

Cu1—N51.955 (3)
Cu1—N22.013 (3)
Cu1—N12.047 (3)
Cu1—N32.078 (3)
Cu1—N42.153 (3)
  2 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  catena-Poly[[{2-[(2-hy-droxy-eth-yl)imino-meth-yl]-6-meth-oxy-phenolato}copper(II)]-μ-thio-cyanato].

Authors:  Ling-Wei Xue; Gan-Qing Zhao; Yong-Jun Han; Yun-Xiao Feng
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-08-28
  2 in total
  2 in total

1.  Bis{2-[3-(dimethyl-ammonio)-propyl-imino-methyl-κN]-6-meth-oxy-phenolato-κO}bis-(thio-cyanato-κN)nickel(II).

Authors:  Ling-Wei Xue; Gan-Qing Zhao; Yong-Jun Han; Li-Hua Chen; Qin-Long Peng
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-10-02

2.  {N,N-Dimethyl-N'-[1-(2-pyrid-yl)ethyl-idene]ethane-1,2-diamine-κN,N',N''}bis-(thio-cyanato-κN)copper(II).

Authors:  Nura Suleiman Gwaram; Hamid Khaledi; Hapipah Mohd Ali
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-06-18
  2 in total

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