| Literature DB >> 21587402 |
Man-Sheng Chen1, Yi-Fang Deng, Chun-Hua Zhang, Dai-Zhi Kuang.
Abstract
The title compound, {[Cd(C(19)H(13)N(4)O(4))(2)(H(2)O)(2)]·4H(2)O}(n) or {[Cd(BBA)(2)(H(2)O)(2)]·4H(2)O}(n), where BBA is 3,5-bis-(iso-nicotin-amido)-benzoate, is isotypic with its Mn isologue [Chen et al. (2009 ▶). J. Coord. Chem.62, 2421-2428]. The cation sits on a twofold axis and is six-coordinated in a slightly distorted octa-hedral geometry; the polyhedra are linked into zigzag chains, which are further connected by N-H⋯O, O-H⋯O and O-H⋯N hydrogen bonds as well as π-π inter-actions [centroid-centroid distance of 3.639 (2) Å], giving a three-dimensional supra-molecular framework.Entities:
Year: 2010 PMID: 21587402 PMCID: PMC2983169 DOI: 10.1107/S1600536810036147
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| [Cd(C19H13N4O4)2(H2O)2]·4H2O | |
| Monoclinic, | Mo |
| Hall symbol: -C 2yc | Cell parameters from 3272 reflections |
| θ = 2.3–25.3° | |
| µ = 0.62 mm−1 | |
| β = 103.801 (2)° | Block, colorless |
| 0.20 × 0.16 × 0.10 mm | |
| Bruker SMART APEX CCD diffractometer | 3867 independent reflections |
| Radiation source: fine-focus sealed tube | 3391 reflections with |
| graphite | |
| phi and ω scans | θmax = 25.8°, θmin = 1.9° |
| Absorption correction: multi-scan ( | |
| 10338 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 3867 reflections | (Δ/σ)max = 0.022 |
| 300 parameters | Δρmax = 0.80 e Å−3 |
| 13 restraints | Δρmin = −0.48 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| Cd1 | 0.0000 | 0.74023 (3) | −0.2500 | 0.03203 (14) | |
| C1 | 0.1391 (2) | 0.6471 (3) | −0.14433 (15) | 0.0341 (8) | |
| C2 | 0.16577 (18) | 0.6286 (3) | −0.07425 (14) | 0.0304 (7) | |
| C3 | 0.21138 (19) | 0.5274 (3) | −0.04962 (15) | 0.0340 (8) | |
| H3A | 0.2266 | 0.4705 | −0.0762 | 0.041* | |
| C4 | 0.23363 (19) | 0.5125 (3) | 0.01481 (16) | 0.0334 (8) | |
| C5 | 0.2124 (2) | 0.5954 (3) | 0.05570 (15) | 0.0360 (8) | |
| H5 | 0.2276 | 0.5832 | 0.0990 | 0.043* | |
| C6 | 0.16780 (19) | 0.6977 (3) | 0.03069 (15) | 0.0312 (7) | |
| C7 | 0.14483 (19) | 0.7127 (3) | −0.03395 (15) | 0.0316 (7) | |
| H7 | 0.1147 | 0.7807 | −0.0505 | 0.038* | |
| C8 | 0.3530 (2) | 0.3931 (3) | 0.03346 (16) | 0.0390 (8) | |
| C9 | 0.3967 (2) | 0.2847 (3) | 0.06802 (18) | 0.0406 (9) | |
| C10 | 0.4431 (2) | 0.2140 (4) | 0.0395 (2) | 0.0550 (11) | |
| H10 | 0.4453 | 0.2292 | −0.0018 | 0.066* | |
| C11 | 0.4868 (3) | 0.1191 (4) | 0.0739 (2) | 0.0638 (13) | |
| H11 | 0.5172 | 0.0701 | 0.0541 | 0.077* | |
| C12 | 0.4417 (3) | 0.1640 (4) | 0.1594 (2) | 0.0609 (12) | |
| H12 | 0.4406 | 0.1472 | 0.2008 | 0.073* | |
| C13 | 0.3957 (3) | 0.2595 (3) | 0.1292 (2) | 0.0532 (11) | |
| H13 | 0.3648 | 0.3054 | 0.1499 | 0.064* | |
| C14 | 0.1521 (2) | 0.7883 (3) | 0.13085 (16) | 0.0372 (8) | |
| C15 | 0.1209 (2) | 0.9006 (3) | 0.15632 (15) | 0.0352 (8) | |
| C16 | 0.1481 (3) | 0.9300 (4) | 0.21868 (17) | 0.0524 (11) | |
| H16 | 0.1864 | 0.8819 | 0.2446 | 0.063* | |
| C17 | 0.1180 (3) | 1.0315 (4) | 0.24232 (18) | 0.0534 (11) | |
| H17 | 0.1380 | 1.0517 | 0.2844 | 0.064* | |
| C18 | 0.0367 (2) | 1.0727 (4) | 0.14846 (17) | 0.0487 (10) | |
| H18 | −0.0018 | 1.1220 | 0.1236 | 0.058* | |
| C19 | 0.0636 (2) | 0.9741 (3) | 0.12058 (17) | 0.0460 (9) | |
| H19 | 0.0433 | 0.9572 | 0.0782 | 0.055* | |
| N1 | 0.4871 (2) | 0.0953 (3) | 0.13331 (19) | 0.0625 (10) | |
| N2 | 0.06210 (18) | 1.1019 (3) | 0.20837 (13) | 0.0398 (7) | |
| N3 | 0.28104 (17) | 0.4100 (3) | 0.04134 (13) | 0.0402 (7) | |
| H3 | 0.2624 | 0.3573 | 0.0632 | 0.048* | |
| N4 | 0.14702 (16) | 0.7905 (3) | 0.06830 (12) | 0.0353 (7) | |
| H4 | 0.1288 | 0.8572 | 0.0491 | 0.042* | |
| O1 | 0.09323 (16) | 0.7351 (2) | −0.16214 (11) | 0.0429 (6) | |
| O2 | 0.16316 (16) | 0.5753 (2) | −0.17948 (11) | 0.0505 (7) | |
| O3 | 0.38414 (17) | 0.4597 (2) | 0.00154 (13) | 0.0585 (8) | |
| O4 | 0.17829 (19) | 0.7016 (2) | 0.16454 (12) | 0.0571 (8) | |
| O5 | 0.07154 (19) | 0.6011 (3) | −0.29733 (14) | 0.0501 (7) | |
| O6 | 0.1941 (3) | 0.3124 (5) | 0.1269 (2) | 0.1053 (14) | |
| O7 | 0.2760 (3) | 0.1472 (3) | 0.20727 (17) | 0.0782 (11) | |
| H5A | 0.050 (2) | 0.539 (3) | −0.3152 (17) | 0.055 (13)* | |
| H7B | 0.299 (3) | 0.154 (6) | 0.2454 (12) | 0.12 (2)* | |
| H7A | 0.283 (3) | 0.073 (2) | 0.198 (2) | 0.11 (2)* | |
| H5B | 0.109 (2) | 0.575 (4) | −0.2698 (18) | 0.088 (19)* | |
| H6B | 0.150 (2) | 0.325 (7) | 0.135 (3) | 0.16 (3)* | |
| H6A | 0.207 (4) | 0.243 (3) | 0.143 (3) | 0.112 (6)* |
| Cd1 | 0.0418 (2) | 0.0269 (2) | 0.0257 (2) | 0.000 | 0.00478 (15) | 0.000 |
| C1 | 0.0364 (19) | 0.0347 (19) | 0.0303 (18) | −0.0015 (16) | 0.0064 (15) | −0.0028 (15) |
| C2 | 0.0296 (17) | 0.0320 (17) | 0.0274 (17) | 0.0024 (14) | 0.0027 (14) | 0.0007 (13) |
| C3 | 0.038 (2) | 0.0279 (18) | 0.0353 (19) | 0.0029 (15) | 0.0069 (16) | −0.0035 (14) |
| C4 | 0.0333 (19) | 0.0292 (18) | 0.0377 (19) | 0.0076 (14) | 0.0082 (15) | 0.0049 (14) |
| C5 | 0.043 (2) | 0.0360 (19) | 0.0276 (18) | 0.0080 (16) | 0.0061 (15) | 0.0047 (14) |
| C6 | 0.0327 (18) | 0.0293 (17) | 0.0324 (18) | 0.0043 (14) | 0.0095 (15) | 0.0024 (14) |
| C7 | 0.0304 (18) | 0.0292 (17) | 0.0348 (18) | 0.0057 (14) | 0.0069 (15) | 0.0022 (14) |
| C8 | 0.045 (2) | 0.0354 (19) | 0.035 (2) | 0.0108 (17) | 0.0064 (17) | 0.0046 (15) |
| C9 | 0.040 (2) | 0.0330 (19) | 0.047 (2) | 0.0070 (16) | 0.0064 (17) | 0.0066 (16) |
| C10 | 0.055 (3) | 0.049 (2) | 0.062 (3) | 0.016 (2) | 0.015 (2) | 0.010 (2) |
| C11 | 0.053 (3) | 0.045 (2) | 0.095 (4) | 0.016 (2) | 0.020 (3) | 0.013 (2) |
| C12 | 0.054 (3) | 0.063 (3) | 0.060 (3) | 0.001 (2) | 0.003 (2) | 0.024 (2) |
| C13 | 0.053 (2) | 0.052 (3) | 0.053 (3) | 0.013 (2) | 0.010 (2) | 0.0152 (19) |
| C14 | 0.041 (2) | 0.0374 (19) | 0.0326 (19) | 0.0035 (16) | 0.0077 (16) | −0.0008 (15) |
| C15 | 0.043 (2) | 0.0338 (18) | 0.0314 (18) | 0.0054 (16) | 0.0139 (16) | 0.0018 (14) |
| C16 | 0.066 (3) | 0.049 (2) | 0.038 (2) | 0.023 (2) | 0.0029 (19) | −0.0039 (18) |
| C17 | 0.071 (3) | 0.054 (3) | 0.030 (2) | 0.014 (2) | 0.0031 (19) | −0.0071 (18) |
| C18 | 0.056 (2) | 0.053 (2) | 0.037 (2) | 0.023 (2) | 0.0090 (18) | 0.0032 (18) |
| C19 | 0.054 (2) | 0.053 (2) | 0.0300 (19) | 0.014 (2) | 0.0076 (17) | −0.0028 (17) |
| N1 | 0.044 (2) | 0.050 (2) | 0.090 (3) | 0.0065 (17) | 0.006 (2) | 0.027 (2) |
| N2 | 0.0495 (19) | 0.0383 (17) | 0.0319 (16) | 0.0079 (14) | 0.0104 (14) | 0.0013 (13) |
| N3 | 0.0494 (19) | 0.0319 (16) | 0.0403 (18) | 0.0120 (14) | 0.0127 (15) | 0.0111 (12) |
| N4 | 0.0453 (18) | 0.0305 (15) | 0.0307 (16) | 0.0105 (13) | 0.0104 (14) | 0.0038 (12) |
| O1 | 0.0536 (16) | 0.0396 (14) | 0.0300 (13) | 0.0159 (12) | −0.0009 (11) | −0.0014 (10) |
| O2 | 0.0682 (19) | 0.0500 (16) | 0.0320 (14) | 0.0208 (14) | 0.0094 (13) | −0.0039 (12) |
| O3 | 0.0618 (18) | 0.0565 (18) | 0.0640 (18) | 0.0204 (15) | 0.0286 (15) | 0.0286 (15) |
| O4 | 0.094 (2) | 0.0429 (15) | 0.0350 (15) | 0.0257 (16) | 0.0179 (15) | 0.0076 (12) |
| O5 | 0.0571 (19) | 0.0382 (16) | 0.0509 (18) | 0.0037 (13) | 0.0048 (14) | −0.0158 (13) |
| O6 | 0.105 (3) | 0.114 (3) | 0.112 (3) | 0.032 (3) | 0.057 (3) | 0.061 (3) |
| O7 | 0.124 (3) | 0.058 (2) | 0.053 (2) | 0.027 (2) | 0.021 (2) | −0.0028 (17) |
| Cd1—O1 | 2.210 (2) | C11—H11 | 0.9300 |
| Cd1—O1i | 2.210 (2) | C12—N1 | 1.318 (5) |
| Cd1—N2ii | 2.331 (3) | C12—C13 | 1.382 (5) |
| Cd1—N2iii | 2.331 (3) | C12—H12 | 0.9300 |
| Cd1—O5i | 2.358 (3) | C13—H13 | 0.9300 |
| Cd1—O5 | 2.358 (3) | C14—O4 | 1.217 (4) |
| C1—O2 | 1.239 (4) | C14—N4 | 1.351 (4) |
| C1—O1 | 1.252 (4) | C14—C15 | 1.498 (5) |
| C1—C2 | 1.507 (4) | C15—C16 | 1.372 (5) |
| C2—C7 | 1.379 (4) | C15—C19 | 1.374 (5) |
| C2—C3 | 1.391 (4) | C16—C17 | 1.376 (5) |
| C3—C4 | 1.380 (4) | C16—H16 | 0.9300 |
| C3—H3A | 0.9300 | C17—N2 | 1.325 (5) |
| C4—C5 | 1.382 (4) | C17—H17 | 0.9300 |
| C4—N3 | 1.428 (4) | C18—N2 | 1.319 (4) |
| C5—C6 | 1.394 (4) | C18—C19 | 1.371 (5) |
| C5—H5 | 0.9300 | C18—H18 | 0.9300 |
| C6—C7 | 1.386 (4) | C19—H19 | 0.9300 |
| C6—N4 | 1.404 (4) | N2—Cd1ii | 2.331 (3) |
| C7—H7 | 0.9300 | N3—H3 | 0.8600 |
| C8—O3 | 1.222 (4) | N4—H4 | 0.8600 |
| C8—N3 | 1.330 (4) | O5—H5A | 0.829 (19) |
| C8—C9 | 1.507 (5) | O5—H5B | 0.83 (3) |
| C9—C13 | 1.372 (6) | O6—H6B | 0.84 (2) |
| C9—C10 | 1.373 (6) | O6—H6A | 0.83 (2) |
| C10—C11 | 1.394 (5) | O7—H7B | 0.84 (2) |
| C10—H10 | 0.9300 | O7—H7A | 0.85 (2) |
| C11—N1 | 1.325 (5) | ||
| O1—Cd1—O1i | 177.13 (12) | C11—C10—H10 | 120.7 |
| O1—Cd1—N2ii | 89.86 (9) | N1—C11—C10 | 123.1 (4) |
| O1i—Cd1—N2ii | 92.25 (10) | N1—C11—H11 | 118.5 |
| O1—Cd1—N2iii | 92.25 (10) | C10—C11—H11 | 118.5 |
| O1i—Cd1—N2iii | 89.86 (9) | N1—C12—C13 | 124.4 (4) |
| N2ii—Cd1—N2iii | 85.36 (15) | N1—C12—H12 | 117.8 |
| O1—Cd1—O5i | 87.95 (10) | C13—C12—H12 | 117.8 |
| O1i—Cd1—O5i | 90.21 (10) | C9—C13—C12 | 118.2 (4) |
| N2ii—Cd1—O5i | 87.17 (11) | C9—C13—H13 | 120.9 |
| N2iii—Cd1—O5i | 172.53 (10) | C12—C13—H13 | 120.9 |
| O1—Cd1—O5 | 90.21 (10) | O4—C14—N4 | 123.5 (3) |
| O1i—Cd1—O5 | 87.95 (10) | O4—C14—C15 | 121.6 (3) |
| N2ii—Cd1—O5 | 172.53 (10) | N4—C14—C15 | 114.9 (3) |
| N2iii—Cd1—O5 | 87.17 (11) | C16—C15—C19 | 117.8 (3) |
| O5i—Cd1—O5 | 100.30 (15) | C16—C15—C14 | 119.2 (3) |
| O2—C1—O1 | 125.3 (3) | C19—C15—C14 | 123.0 (3) |
| O2—C1—C2 | 118.7 (3) | C15—C16—C17 | 119.1 (4) |
| O1—C1—C2 | 116.1 (3) | C15—C16—H16 | 120.5 |
| C7—C2—C3 | 119.5 (3) | C17—C16—H16 | 120.5 |
| C7—C2—C1 | 119.8 (3) | N2—C17—C16 | 123.5 (4) |
| C3—C2—C1 | 120.7 (3) | N2—C17—H17 | 118.2 |
| C4—C3—C2 | 119.0 (3) | C16—C17—H17 | 118.2 |
| C4—C3—H3A | 120.5 | N2—C18—C19 | 124.0 (3) |
| C2—C3—H3A | 120.5 | N2—C18—H18 | 118.0 |
| C3—C4—C5 | 122.1 (3) | C19—C18—H18 | 118.0 |
| C3—C4—N3 | 120.2 (3) | C15—C19—C18 | 118.9 (3) |
| C5—C4—N3 | 117.7 (3) | C15—C19—H19 | 120.5 |
| C4—C5—C6 | 118.5 (3) | C18—C19—H19 | 120.5 |
| C4—C5—H5 | 120.7 | C12—N1—C11 | 117.0 (4) |
| C6—C5—H5 | 120.7 | C18—N2—C17 | 116.7 (3) |
| C7—C6—C5 | 119.6 (3) | C18—N2—Cd1ii | 119.1 (2) |
| C7—C6—N4 | 117.5 (3) | C17—N2—Cd1ii | 124.0 (2) |
| C5—C6—N4 | 122.9 (3) | C8—N3—C4 | 122.4 (3) |
| C2—C7—C6 | 121.2 (3) | C8—N3—H3 | 118.8 |
| C2—C7—H7 | 119.4 | C4—N3—H3 | 118.8 |
| C6—C7—H7 | 119.4 | C14—N4—C6 | 128.2 (3) |
| O3—C8—N3 | 124.2 (3) | C14—N4—H4 | 115.9 |
| O3—C8—C9 | 120.3 (3) | C6—N4—H4 | 115.9 |
| N3—C8—C9 | 115.5 (3) | C1—O1—Cd1 | 125.4 (2) |
| C13—C9—C10 | 118.7 (3) | Cd1—O5—H5A | 120 (3) |
| C13—C9—C8 | 121.5 (3) | Cd1—O5—H5B | 109 (3) |
| C10—C9—C8 | 119.7 (4) | H5A—O5—H5B | 105 (4) |
| C9—C10—C11 | 118.6 (4) | H6B—O6—H6A | 104 (6) |
| C9—C10—H10 | 120.7 | H7B—O7—H7A | 104 (5) |
| O2—C1—C2—C7 | 175.0 (3) | O4—C14—C15—C19 | −151.8 (4) |
| O1—C1—C2—C7 | −5.5 (5) | N4—C14—C15—C19 | 26.8 (5) |
| O2—C1—C2—C3 | −5.1 (5) | C19—C15—C16—C17 | −0.9 (6) |
| O1—C1—C2—C3 | 174.5 (3) | C14—C15—C16—C17 | −178.5 (4) |
| C7—C2—C3—C4 | 1.0 (5) | C15—C16—C17—N2 | 1.8 (7) |
| C1—C2—C3—C4 | −179.0 (3) | C16—C15—C19—C18 | 0.3 (6) |
| C2—C3—C4—C5 | −0.4 (5) | C14—C15—C19—C18 | 177.8 (4) |
| C2—C3—C4—N3 | −179.4 (3) | N2—C18—C19—C15 | −0.5 (6) |
| C3—C4—C5—C6 | −0.7 (5) | C13—C12—N1—C11 | −1.2 (7) |
| N3—C4—C5—C6 | 178.4 (3) | C10—C11—N1—C12 | 1.9 (7) |
| C4—C5—C6—C7 | 1.1 (5) | C19—C18—N2—C17 | 1.3 (6) |
| C4—C5—C6—N4 | −176.4 (3) | C19—C18—N2—Cd1ii | −173.3 (3) |
| C3—C2—C7—C6 | −0.6 (5) | C16—C17—N2—C18 | −1.9 (6) |
| C1—C2—C7—C6 | 179.4 (3) | C16—C17—N2—Cd1ii | 172.4 (3) |
| C5—C6—C7—C2 | −0.5 (5) | O3—C8—N3—C4 | −2.7 (6) |
| N4—C6—C7—C2 | 177.1 (3) | C9—C8—N3—C4 | 176.3 (3) |
| O3—C8—C9—C13 | 135.5 (4) | C3—C4—N3—C8 | 62.3 (5) |
| N3—C8—C9—C13 | −43.5 (5) | C5—C4—N3—C8 | −116.8 (4) |
| O3—C8—C9—C10 | −40.0 (5) | O4—C14—N4—C6 | 1.7 (6) |
| N3—C8—C9—C10 | 141.0 (4) | C15—C14—N4—C6 | −176.9 (3) |
| C13—C9—C10—C11 | 0.4 (6) | C7—C6—N4—C14 | 169.1 (3) |
| C8—C9—C10—C11 | 176.0 (4) | C5—C6—N4—C14 | −13.4 (6) |
| C9—C10—C11—N1 | −1.5 (7) | O2—C1—O1—Cd1 | 31.5 (5) |
| C10—C9—C13—C12 | 0.2 (6) | C2—C1—O1—Cd1 | −148.0 (2) |
| C8—C9—C13—C12 | −175.3 (4) | N2ii—Cd1—O1—C1 | 160.5 (3) |
| N1—C12—C13—C9 | 0.2 (7) | N2iii—Cd1—O1—C1 | −114.2 (3) |
| O4—C14—C15—C16 | 25.7 (6) | O5i—Cd1—O1—C1 | 73.3 (3) |
| N4—C14—C15—C16 | −155.7 (3) | O5—Cd1—O1—C1 | −27.0 (3) |
| H··· | ||||
| N3—H3···O6 | 0.86 | 2.10 | 2.885 (5) | 151 |
| N4—H4···O3iv | 0.86 | 2.26 | 3.096 (4) | 164 |
| O5—H5B···O2 | 0.83 (3) | 1.98 (3) | 2.710 (4) | 145 (4) |
| O5—H5A···N1v | 0.83 (2) | 2.00 (2) | 2.825 (4) | 172 (4) |
| O6—H6B···O5vi | 0.84 (2) | 2.40 (4) | 3.163 (6) | 151 (6) |
| O6—H6A···O7 | 0.82 (3) | 1.92 (4) | 2.681 (6) | 148 (5) |
| O7—H7A···O2vii | 0.85 (2) | 1.96 (3) | 2.767 (4) | 162 (5) |
| O7—H7B···O4viii | 0.84 (2) | 1.99 (3) | 2.791 (4) | 159 (6) |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| N3—H3⋯O6 | 0.86 | 2.10 | 2.885 (5) | 151 |
| N4—H4⋯O3i | 0.86 | 2.26 | 3.096 (4) | 164 |
| O5—H5 | 0.83 (3) | 1.98 (3) | 2.710 (4) | 145 (4) |
| O5—H5 | 0.83 (2) | 2.00 (2) | 2.825 (4) | 172 (4) |
| O6—H6 | 0.84 (2) | 2.40 (4) | 3.163 (6) | 151 (6) |
| O6—H6 | 0.82 (3) | 1.92 (4) | 2.681 (6) | 148 (5) |
| O7—H7 | 0.85 (2) | 1.96 (3) | 2.767 (4) | 162 (5) |
| O7—H7 | 0.84 (2) | 1.99 (3) | 2.791 (4) | 159 (6) |
Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) .