Literature DB >> 21587385

catena-Poly[(μ(2)-3-carb-oxy-5-nitro-benzoato)(μ(3)-5-nitro-benzene-1,3-dicarboxyl-ato)(1,10-phenanthroline)gadolinium(III)].

Jun Wang, Zhi-Li Fang.   

Abstract

The crystal structure of the title complex, [Gd(C(8)H(3)NO(6))(C(8)H(4)NO(6))(C(12)H(8)N(2))](n), contains polymeric chains made up of Gd(III) atoms, 1,10-phenanthroline and fully or half-deproton-ated 5-nitro-benzene-1,3-dicarb-oxy-lic acid (H(2)L) ligands. The Gd(III) atom is coordinated in a distorted bicapped trigonal-prismatic fashion by six O atoms from two HL(-) and three L(2-) ligands, and by two N atoms from the 1,10-phenanthroline ligand. The L(2-) ligands bridge the Gd-phenanthroline units, forming chains running parallel to [100]. O-H⋯O hydrogen bonding as well as π-π stacking inter-actions with an inter-planar distance of 3.599 (2) Å assemble neighboring polymeric chains.

Entities:  

Year:  2010        PMID: 21587385      PMCID: PMC2983181          DOI: 10.1107/S1600536810035452

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to π–π stacking in biological systems, see: Deisenhofer & Michel (1989 ▶). For some crystal structures of metal complexes exhibiting π–π stacking, see: Li et al. (2005 ▶); Pan & Xu (2004 ▶); Wu et al. (2003 ▶); Qiu et al. (2009 ▶).

Experimental

Crystal data

[Gd(C8H3NO6)(C8H4NO6)(C12H8N2)] M = 756.69 Triclinic, a = 10.300 (3) Å b = 12.030 (3) Å c = 12.150 (3) Å α = 70.581 (4)° β = 85.925 (4)° γ = 76.512 (2)° V = 1380.6 (7) Å3 Z = 2 Mo Kα radiation μ = 2.48 mm−1 T = 298 K 0.28 × 0.26 × 0.22 mm

Data collection

Bruker SMART CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.544, T max = 0.612 6876 measured reflections 4837 independent reflections 4259 reflections with I > 2σ(I) R int = 0.030

Refinement

R[F 2 > 2σ(F 2)] = 0.045 wR(F 2) = 0.121 S = 1.04 4837 reflections 407 parameters H-atom parameters constrained Δρmax = 2.51 e Å−3 Δρmin = −2.59 e Å−3 Data collection: SMART (Bruker, 2004 ▶); cell refinement: SAINT-Plus (Bruker, 2004 ▶); data reduction: SAINT-Plus; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536810035452/wm2394sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810035452/wm2394Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Gd(C8H3NO6)(C8H4NO6)(C12H8N2)]Z = 2
Mr = 756.69F(000) = 742
Triclinic, P1Dx = 1.820 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 10.300 (3) ÅCell parameters from 5111 reflections
b = 12.030 (3) Åθ = 2.6–27.7°
c = 12.150 (3) ŵ = 2.48 mm1
α = 70.581 (4)°T = 298 K
β = 85.925 (4)°Prism, colorless
γ = 76.512 (2)°0.28 × 0.26 × 0.22 mm
V = 1380.6 (7) Å3
Bruker SMART CCD area-detector diffractometer4860 independent reflections
Radiation source: fine-focus sealed tube4259 reflections with I > 2σ(I)
graphiteRint = 0.030
φ and ω scanθmax = 25.3°, θmin = 1.8°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −12→12
Tmin = 0.544, Tmax = 0.612k = −13→14
6896 measured reflectionsl = −14→13
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.045Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.121H-atom parameters constrained
S = 1.03w = 1/[σ2(Fo2) + (0.0811P)2] where P = (Fo2 + 2Fc2)/3
4837 reflections(Δ/σ)max < 0.001
407 parametersΔρmax = 2.51 e Å3
0 restraintsΔρmin = −2.59 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C11.0366 (7)0.0929 (6)0.6625 (5)0.0330 (14)
C21.0511 (6)0.1117 (6)0.7766 (5)0.0308 (13)
C31.1673 (7)0.0513 (6)0.8416 (6)0.0407 (16)
H31.23710.00400.81320.049*
C41.1762 (8)0.0635 (7)0.9504 (6)0.0465 (18)
C51.0753 (7)0.1320 (6)0.9960 (6)0.0423 (16)
H51.08410.13781.06940.051*
C60.9615 (7)0.1914 (7)0.9309 (6)0.0419 (16)
C70.9488 (7)0.1835 (6)0.8200 (6)0.0374 (15)
H70.87230.22610.77550.045*
C80.8451 (9)0.2616 (8)0.9788 (7)0.057 (2)
C90.5970 (6)0.1875 (6)0.3097 (5)0.0292 (13)
C100.4627 (6)0.2185 (5)0.2498 (5)0.0270 (12)
C110.4353 (6)0.3072 (6)0.1421 (5)0.0321 (13)
H110.50130.34400.09950.039*
C120.3063 (6)0.3388 (6)0.1007 (5)0.0328 (14)
C130.2038 (6)0.2870 (6)0.1622 (5)0.0314 (13)
H130.11690.31280.13310.038*
C140.2355 (6)0.1959 (5)0.2679 (5)0.0256 (12)
C150.3643 (6)0.1606 (5)0.3105 (5)0.0279 (12)
H150.38580.09760.38040.033*
C170.5715 (9)0.1824 (8)0.6347 (8)0.061 (2)
H170.56630.10880.62800.073*
C180.4954 (10)0.2208 (11)0.7209 (9)0.085 (4)
H180.44240.17270.77040.103*
C190.4993 (10)0.3254 (11)0.7313 (9)0.081 (3)
H190.44840.35190.78780.097*
C200.5823 (9)0.3984 (9)0.6552 (8)0.064 (3)
C210.5923 (12)0.5114 (12)0.6605 (11)0.091 (4)
H210.54190.54200.71480.109*
C220.6719 (14)0.5746 (11)0.5897 (12)0.096 (4)
H220.67810.64760.59730.115*
C230.7507 (11)0.5337 (9)0.4998 (10)0.074 (3)
C240.8317 (13)0.5984 (10)0.4198 (12)0.095 (4)
H240.84090.67220.42340.114*
C250.8966 (12)0.5558 (9)0.3378 (11)0.088 (3)
H250.95080.59910.28430.106*
C260.8809 (9)0.4432 (7)0.3339 (8)0.057 (2)
H260.92400.41510.27530.068*
C270.7400 (8)0.4227 (7)0.4915 (7)0.0451 (18)
C280.6557 (7)0.3526 (7)0.5716 (6)0.0447 (18)
Gd10.82752 (3)0.14792 (3)0.44144 (2)0.02604 (13)
N11.2997 (8)−0.0016 (8)1.0209 (7)0.072 (2)
N20.2724 (6)0.4320 (6)−0.0147 (5)0.0500 (16)
N30.6506 (6)0.2452 (5)0.5622 (5)0.0448 (15)
N40.8089 (6)0.3768 (5)0.4088 (5)0.0414 (14)
O10.9505 (5)0.1690 (4)0.5913 (4)0.0412 (11)
O21.1124 (5)0.0033 (5)0.6459 (4)0.0466 (12)
O31.3864 (8)−0.0642 (9)0.9807 (8)0.118 (4)
O41.3055 (9)0.0089 (8)1.1154 (7)0.113 (3)
O50.8641 (6)0.2486 (6)1.0881 (5)0.0647 (16)
H5A0.79310.27351.11640.097*
O60.7481 (8)0.3226 (11)0.9241 (7)0.140 (5)
O70.6825 (4)0.2498 (4)0.2637 (4)0.0335 (10)
O80.6158 (4)0.1067 (4)0.4063 (4)0.0413 (11)
O90.3605 (6)0.4789 (5)−0.0694 (5)0.0593 (15)
O100.1591 (7)0.4607 (8)−0.0498 (6)0.103 (3)
C160.1297 (6)0.1363 (6)0.3374 (5)0.0300 (13)
O110.0114 (4)0.1968 (4)0.3252 (4)0.0421 (11)
O120.1665 (5)0.0297 (4)0.4038 (4)0.0448 (12)
U11U22U33U12U13U23
C10.038 (4)0.044 (4)0.022 (3)−0.013 (3)−0.002 (3)−0.014 (3)
C20.039 (4)0.037 (3)0.020 (3)−0.010 (3)−0.004 (3)−0.012 (3)
C30.039 (4)0.048 (4)0.032 (4)−0.001 (3)−0.007 (3)−0.013 (3)
C40.047 (4)0.059 (5)0.030 (4)−0.007 (3)−0.014 (3)−0.010 (3)
C50.055 (4)0.052 (4)0.023 (3)−0.011 (3)−0.004 (3)−0.016 (3)
C60.049 (4)0.053 (4)0.025 (4)−0.010 (3)0.001 (3)−0.016 (3)
C70.043 (4)0.052 (4)0.020 (3)−0.010 (3)−0.002 (3)−0.014 (3)
C80.055 (5)0.080 (6)0.041 (5)0.001 (4)0.000 (4)−0.038 (4)
C90.019 (3)0.044 (4)0.024 (3)−0.006 (2)−0.001 (2)−0.012 (3)
C100.020 (3)0.039 (3)0.021 (3)−0.005 (2)0.000 (2)−0.009 (3)
C110.025 (3)0.045 (4)0.024 (3)−0.011 (3)0.004 (2)−0.006 (3)
C120.038 (4)0.041 (3)0.017 (3)−0.015 (3)0.000 (3)−0.002 (3)
C130.024 (3)0.046 (4)0.024 (3)−0.007 (3)−0.001 (2)−0.011 (3)
C140.023 (3)0.035 (3)0.019 (3)−0.008 (2)0.001 (2)−0.008 (2)
C150.027 (3)0.036 (3)0.019 (3)−0.006 (2)−0.002 (2)−0.006 (3)
C170.054 (5)0.060 (5)0.057 (6)−0.004 (4)0.025 (4)−0.014 (4)
C180.073 (7)0.093 (8)0.062 (7)0.011 (6)0.037 (5)−0.014 (6)
C190.070 (7)0.101 (8)0.052 (6)0.010 (6)0.029 (5)−0.024 (6)
C200.065 (6)0.072 (6)0.053 (5)0.019 (4)−0.007 (4)−0.039 (5)
C210.084 (8)0.117 (10)0.088 (9)−0.001 (7)0.008 (7)−0.071 (8)
C220.113 (10)0.080 (7)0.116 (10)0.008 (7)−0.021 (8)−0.075 (8)
C230.089 (7)0.057 (5)0.079 (7)−0.002 (5)−0.022 (6)−0.033 (5)
C240.114 (10)0.056 (6)0.128 (11)−0.026 (6)−0.008 (8)−0.039 (7)
C250.106 (9)0.049 (5)0.099 (9)−0.029 (5)0.006 (7)−0.004 (6)
C260.072 (6)0.041 (4)0.050 (5)−0.014 (4)0.002 (4)−0.006 (4)
C270.047 (4)0.041 (4)0.047 (5)0.002 (3)−0.015 (4)−0.019 (3)
C280.038 (4)0.054 (5)0.036 (4)0.004 (3)−0.005 (3)−0.017 (4)
Gd10.02026 (18)0.0381 (2)0.01841 (18)−0.00571 (12)0.00062 (11)−0.00808 (13)
N10.068 (5)0.094 (6)0.053 (5)0.011 (4)−0.035 (4)−0.034 (4)
N20.049 (4)0.065 (4)0.023 (3)−0.016 (3)−0.006 (3)0.006 (3)
N30.041 (3)0.051 (4)0.036 (3)0.003 (3)0.011 (3)−0.017 (3)
N40.046 (3)0.042 (3)0.030 (3)−0.004 (3)−0.002 (3)−0.007 (3)
O10.052 (3)0.048 (3)0.026 (2)−0.009 (2)−0.013 (2)−0.014 (2)
O20.043 (3)0.059 (3)0.046 (3)−0.004 (2)−0.002 (2)−0.031 (3)
O30.082 (5)0.163 (8)0.098 (6)0.055 (6)−0.056 (5)−0.072 (6)
O40.113 (6)0.153 (8)0.066 (5)0.039 (6)−0.060 (5)−0.058 (5)
O50.060 (4)0.104 (5)0.033 (3)−0.009 (3)0.009 (3)−0.035 (3)
O60.092 (6)0.236 (11)0.086 (6)0.077 (7)−0.041 (5)−0.112 (7)
O70.027 (2)0.044 (2)0.024 (2)−0.0110 (18)−0.0016 (18)−0.0002 (19)
O80.026 (2)0.056 (3)0.030 (3)−0.014 (2)−0.0062 (19)0.006 (2)
O90.060 (4)0.069 (4)0.031 (3)−0.023 (3)0.008 (3)0.012 (3)
O100.065 (5)0.137 (7)0.063 (5)−0.040 (4)−0.032 (4)0.044 (4)
C160.032 (3)0.045 (4)0.014 (3)−0.013 (3)0.001 (2)−0.009 (3)
O110.026 (2)0.056 (3)0.040 (3)−0.012 (2)0.008 (2)−0.010 (2)
O120.040 (3)0.054 (3)0.032 (3)−0.021 (2)−0.005 (2)0.004 (2)
C1—O21.242 (8)C19—H190.9300
C1—O11.256 (8)C20—C281.405 (10)
C1—C21.500 (8)C20—C211.411 (16)
C2—C31.390 (9)C21—C221.322 (18)
C2—C71.391 (9)C21—H210.9300
C3—C41.390 (10)C22—C231.463 (16)
C3—H30.9300C22—H220.9300
C4—C51.374 (10)C23—C241.391 (16)
C4—N11.487 (10)C23—C271.402 (12)
C5—C61.370 (10)C24—C251.338 (16)
C5—H50.9300C24—H240.9300
C6—C71.399 (9)C25—C261.417 (13)
C6—C81.498 (10)C25—H250.9300
C7—H70.9300C26—N41.309 (10)
C8—O61.187 (10)C26—H260.9300
C8—O51.308 (9)C27—N41.380 (9)
C9—O81.243 (8)C27—C281.445 (11)
C9—O71.268 (7)C28—N31.348 (9)
C9—C101.519 (8)Gd1—O12i2.322 (5)
C10—C111.383 (9)Gd1—O2ii2.342 (4)
C10—C151.392 (8)Gd1—O11iii2.349 (4)
C11—C121.376 (9)Gd1—O12.403 (4)
C11—H110.9300Gd1—O82.442 (4)
C12—C131.396 (9)Gd1—O72.499 (4)
C12—N21.479 (8)Gd1—N32.571 (5)
C13—C141.383 (9)Gd1—N42.611 (6)
C13—H130.9300N1—O41.204 (9)
C14—C151.378 (8)N1—O31.214 (10)
C14—C161.498 (8)N2—O101.204 (9)
C15—H150.9300N2—O91.220 (8)
C17—N31.324 (11)O2—Gd1ii2.342 (4)
C17—C181.401 (12)O5—H5A0.8200
C17—H170.9300C16—O121.252 (8)
C18—C191.316 (16)C16—O111.257 (7)
C18—H180.9300O11—Gd1iv2.349 (4)
C19—C201.434 (15)O12—Gd1i2.322 (5)
O2—C1—O1125.4 (6)C25—C24—C23120.8 (10)
O2—C1—C2116.8 (6)C25—C24—H24119.6
O1—C1—C2117.8 (6)C23—C24—H24119.6
C3—C2—C7120.1 (6)C24—C25—C26118.6 (10)
C3—C2—C1118.6 (6)C24—C25—H25120.7
C7—C2—C1121.3 (6)C26—C25—H25120.7
C4—C3—C2118.1 (6)N4—C26—C25123.3 (9)
C4—C3—H3121.0N4—C26—H26118.3
C2—C3—H3121.0C25—C26—H26118.3
C5—C4—C3122.9 (7)N4—C27—C23121.9 (9)
C5—C4—N1118.7 (6)N4—C27—C28118.2 (6)
C3—C4—N1118.4 (7)C23—C27—C28119.9 (8)
C6—C5—C4118.5 (6)N3—C28—C20122.7 (8)
C6—C5—H5120.8N3—C28—C27118.0 (6)
C4—C5—H5120.8C20—C28—C27119.4 (8)
C5—C6—C7120.7 (7)O12i—Gd1—O2ii76.27 (19)
C5—C6—C8120.9 (6)O12i—Gd1—O11iii124.82 (17)
C7—C6—C8118.3 (7)O2ii—Gd1—O11iii76.07 (18)
C2—C7—C6119.7 (6)O12i—Gd1—O175.73 (17)
C2—C7—H7120.1O2ii—Gd1—O1126.15 (17)
C6—C7—H7120.1O11iii—Gd1—O183.73 (17)
O6—C8—O5124.0 (7)O12i—Gd1—O880.85 (15)
O6—C8—C6124.2 (7)O2ii—Gd1—O875.42 (17)
O5—C8—C6111.8 (7)O11iii—Gd1—O8134.60 (16)
O8—C9—O7122.3 (5)O1—Gd1—O8141.63 (17)
O8—C9—C10118.4 (5)O12i—Gd1—O7132.49 (15)
O7—C9—C10119.1 (5)O2ii—Gd1—O781.73 (16)
C11—C10—C15120.8 (5)O11iii—Gd1—O788.64 (15)
C11—C10—C9121.4 (5)O1—Gd1—O7147.63 (16)
C15—C10—C9117.6 (5)O8—Gd1—O752.84 (14)
C12—C11—C10117.3 (6)O12i—Gd1—N384.99 (19)
C12—C11—H11121.4O2ii—Gd1—N3145.6 (2)
C10—C11—H11121.4O11iii—Gd1—N3137.47 (19)
C11—C12—C13123.4 (6)O1—Gd1—N374.72 (18)
C11—C12—N2119.3 (6)O8—Gd1—N373.32 (19)
C13—C12—N2117.3 (6)O7—Gd1—N390.53 (17)
C14—C13—C12117.9 (6)O12i—Gd1—N4138.41 (18)
C14—C13—H13121.1O2ii—Gd1—N4144.26 (19)
C12—C13—H13121.1O11iii—Gd1—N474.83 (18)
C15—C14—C13120.1 (5)O1—Gd1—N470.35 (17)
C15—C14—C16119.7 (5)O8—Gd1—N4112.27 (17)
C13—C14—C16120.2 (5)O7—Gd1—N477.29 (16)
C14—C15—C10120.5 (6)N3—Gd1—N463.6 (2)
C14—C15—H15119.8O4—N1—O3124.4 (8)
C10—C15—H15119.8O4—N1—C4117.7 (8)
N3—C17—C18123.5 (10)O3—N1—C4117.9 (7)
N3—C17—H17118.2O10—N2—O9122.6 (6)
C18—C17—H17118.2O10—N2—C12119.1 (6)
C19—C18—C17119.6 (10)O9—N2—C12118.3 (6)
C19—C18—H18120.2C17—N3—C28117.6 (6)
C17—C18—H18120.2C17—N3—Gd1121.2 (5)
C18—C19—C20119.8 (8)C28—N3—Gd1119.7 (5)
C18—C19—H19120.1C26—N4—C27117.6 (7)
C20—C19—H19120.1C26—N4—Gd1124.1 (5)
C28—C20—C21119.8 (10)C27—N4—Gd1116.9 (5)
C28—C20—C19116.8 (9)C1—O1—Gd1130.5 (4)
C21—C20—C19123.4 (9)C1—O2—Gd1ii153.7 (4)
C22—C21—C20121.3 (10)C8—O5—H5A109.5
C22—C21—H21119.4C9—O7—Gd190.7 (3)
C20—C21—H21119.4C9—O8—Gd194.0 (4)
C21—C22—C23122.2 (10)O12—C16—O11124.9 (6)
C21—C22—H22118.9O12—C16—C14117.3 (5)
C23—C22—H22118.9O11—C16—C14117.8 (6)
C24—C23—C27117.7 (10)C16—O11—Gd1iv127.2 (4)
C24—C23—C22124.9 (10)C16—O12—Gd1i161.3 (4)
C27—C23—C22117.4 (11)
D—H···AD—HH···AD···AD—H···A
O5—H5A···O7v0.822.032.737 (7)145
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O5—H5A⋯O7i0.822.032.737 (7)145

Symmetry code: (i) .

  4 in total

1.  catena-Poly[[bis(1H-benzimidazole-kappaN3)(salicylato-kappaO)copper(II)]-mu-salicylato-O,O':O''].

Authors:  Hong Li; Kai-Liang Yin; Duan-Jun Xu
Journal:  Acta Crystallogr C       Date:  2004-12-11       Impact factor: 1.172

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  Syntheses, crystal structures, and gas storage studies in new three-dimensional 5-aminoisophthalate praseodymium polymeric complexes.

Authors:  Yongcai Qiu; Hong Deng; Shihe Yang; Jixia Mou; Carole Daiguebonne; Nicolas Kerbellec; Olivier Guillou; Stuart R Batten
Journal:  Inorg Chem       Date:  2009-05-04       Impact factor: 5.165

Review 4.  Nobel lecture. The photosynthetic reaction centre from the purple bacterium Rhodopseudomonas viridis.

Authors:  J Deisenhofer; H Michel
Journal:  EMBO J       Date:  1989-08       Impact factor: 11.598

  4 in total

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