Literature DB >> 21587376

Aqua-bis-[4-(methyl-sulfan-yl)benzoato-κO]bis-(pyridine-κN)copper(II).

Guo-Qing Jiang1, Jian-Hua Chen, Miao Wang, Yu-Jun Shi.   

Abstract

In the title mol-ecule, [Cu(C(8)H(7)O(2)S)(2)(C(5)H(5)N)(2)(H(2)O)], the Cu(II) ion is penta-coordinated in a distorted square-pyramidal geometry by two O atoms of two 4-(methyl-sulfan-yl)benzoate anions and two N atoms of two pyridine ligands and a water O atom situated at the apical site. In the crystal structure, O-H⋯O hydrogen bonds link mol-ecules into chains along the b axis.

Entities:  

Year:  2010        PMID: 21587376      PMCID: PMC2983350          DOI: 10.1107/S1600536810035336

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the pharmacological properties of thio­amino acid for treating copper intoxication, see: Tran-Ho et al. (1997 ▶). For the catalytic properties of copper(II) complexes, see: Kawasaki & Katsuki (1997 ▶).

Experimental

Crystal data

[Cu(C8H7O2S)2(C5H5N)2(H2O)] M = 574.15 Monoclinic, a = 25.676 (5) Å b = 6.0030 (11) Å c = 17.026 (3) Å β = 97.753 (4)° V = 2600.3 (8) Å3 Z = 4 Mo Kα radiation μ = 1.04 mm−1 T = 293 K 0.22 × 0.16 × 0.10 mm

Data collection

Bruker SMART APEX CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2000 ▶) T min = 0.885, T max = 0.903 14401 measured reflections 4822 independent reflections 3640 reflections with I > 2σ(I) R int = 0.034

Refinement

R[F 2 > 2σ(F 2)] = 0.035 wR(F 2) = 0.106 S = 1.00 4822 reflections 332 parameters 20 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.28 e Å−3 Δρmin = −0.32 e Å−3 Data collection: SMART (Bruker, 2000 ▶); cell refinement: SAINT (Bruker, 2000 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810035336/cv2757sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810035336/cv2757Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Cu(C8H7O2S)2(C5H5N)2(H2O)]F(000) = 1188
Mr = 574.15Dx = 1.467 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 4039 reflections
a = 25.676 (5) Åθ = 2.4–27.2°
b = 6.0030 (11) ŵ = 1.04 mm1
c = 17.026 (3) ÅT = 293 K
β = 97.753 (4)°Prism, blue
V = 2600.3 (8) Å30.22 × 0.16 × 0.10 mm
Z = 4
Bruker SMART APEX CCD area-detector diffractometer4822 independent reflections
Radiation source: fine-focus sealed tube3640 reflections with I > 2σ(I)
graphiteRint = 0.034
phi and ω scansθmax = 25.5°, θmin = 1.6°
Absorption correction: multi-scan (SADABS; Bruker, 2000)h = −30→31
Tmin = 0.885, Tmax = 0.903k = −5→7
14401 measured reflectionsl = −20→20
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.035Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.106H atoms treated by a mixture of independent and constrained refinement
S = 1.00w = 1/[σ2(Fo2) + (0.0646P)2] where P = (Fo2 + 2Fc2)/3
4822 reflections(Δ/σ)max = 0.003
332 parametersΔρmax = 0.28 e Å3
20 restraintsΔρmin = −0.32 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cu10.743521 (11)0.02678 (5)0.137765 (17)0.03387 (12)
S10.45561 (3)−0.03164 (14)−0.19282 (5)0.0620 (2)
S21.05166 (4)−0.0851 (2)0.41678 (7)0.0901 (4)
C10.50925 (10)−0.0745 (5)−0.11836 (15)0.0409 (6)
C20.51918 (10)−0.2719 (5)−0.07666 (17)0.0464 (7)
H20.4961−0.3912−0.08640.056*
C30.56350 (10)−0.2922 (4)−0.02033 (15)0.0415 (6)
H30.5699−0.42620.00660.050*
C40.59820 (9)−0.1168 (4)−0.00363 (14)0.0341 (5)
C50.58709 (10)0.0812 (5)−0.04404 (16)0.0434 (6)
H50.60940.2023−0.03270.052*
C60.54381 (11)0.1033 (5)−0.10060 (16)0.0475 (7)
H60.53750.2379−0.12720.057*
C70.41908 (12)−0.2863 (6)−0.1935 (2)0.0723 (10)
H7A0.3887−0.2776−0.23290.108*
H7B0.4082−0.3094−0.14230.108*
H7C0.4408−0.4084−0.20560.108*
C80.64799 (9)−0.1484 (5)0.05272 (14)0.0371 (6)
C90.98963 (11)−0.0843 (5)0.35707 (17)0.0519 (7)
C100.97517 (11)−0.2785 (5)0.31685 (18)0.0564 (8)
H100.9984−0.39800.32000.068*
C110.92676 (10)−0.2969 (5)0.27216 (17)0.0493 (7)
H110.9171−0.43070.24680.059*
C120.89200 (9)−0.1183 (5)0.26422 (15)0.0378 (6)
C130.90713 (11)0.0767 (5)0.30264 (16)0.0447 (6)
H130.88450.19840.29760.054*
C140.95556 (11)0.0948 (5)0.34880 (17)0.0539 (8)
H140.96520.22830.37440.065*
C151.06228 (15)0.1976 (8)0.4476 (3)0.1061 (16)
H15A1.09670.21200.47720.159*
H15B1.03630.24030.48030.159*
H15C1.05960.29240.40180.159*
C160.83848 (10)−0.1431 (5)0.21525 (16)0.0440 (6)
C170.77130 (11)−0.1691 (5)−0.01263 (17)0.0519 (6)
H17A0.7478−0.2801−0.00250.062*
C180.79446 (12)−0.1837 (5)−0.08029 (17)0.0555 (6)
H18A0.7870−0.3029−0.11480.067*
C190.82878 (12)−0.0210 (5)−0.09659 (18)0.0556 (6)
H19A0.8443−0.0257−0.14280.067*
C200.83972 (12)0.1497 (6)−0.04289 (17)0.0590 (8)
H200.86340.2614−0.05170.071*
C210.81514 (11)0.1524 (5)0.02388 (17)0.0533 (8)
H210.82280.26820.05990.064*
C220.67778 (10)−0.1574 (5)0.25511 (15)0.0442 (6)
H220.6689−0.26700.21710.053*
C230.65702 (11)−0.1699 (5)0.32568 (17)0.0507 (7)
H230.6349−0.28700.33490.061*
C240.66933 (12)−0.0074 (5)0.38224 (17)0.0513 (7)
H240.6559−0.01300.43020.062*
C250.70184 (12)0.1627 (5)0.36627 (17)0.0535 (8)
H250.71050.27570.40310.064*
C260.72176 (11)0.1645 (5)0.29452 (15)0.0462 (7)
H260.74400.27990.28420.055*
N10.78083 (8)−0.0024 (3)0.03984 (13)0.0399 (5)
N20.71013 (8)0.0062 (3)0.23945 (12)0.0381 (5)
O10.66052 (7)−0.3399 (3)0.07546 (11)0.0523 (5)
O20.67505 (7)0.0256 (3)0.07148 (11)0.0448 (5)
O30.82353 (9)−0.3270 (4)0.19108 (17)0.0859 (8)
O40.81221 (7)0.0363 (3)0.20312 (11)0.0444 (5)
O1W0.74339 (8)0.4003 (4)0.13501 (13)0.0558 (6)
H1WA0.7665 (10)0.495 (4)0.148 (2)0.067*
H1WB0.7188 (10)0.478 (5)0.1131 (18)0.067*
U11U22U33U12U13U23
Cu10.02653 (17)0.0401 (2)0.03353 (19)−0.00232 (12)−0.00137 (12)0.00054 (13)
S10.0502 (5)0.0705 (6)0.0579 (5)0.0065 (4)−0.0202 (4)0.0042 (4)
S20.0474 (5)0.1133 (9)0.0982 (8)−0.0033 (5)−0.0316 (5)0.0246 (6)
C10.0335 (13)0.0487 (17)0.0383 (14)0.0056 (12)−0.0030 (11)−0.0035 (12)
C20.0362 (14)0.0432 (16)0.0563 (17)−0.0065 (12)−0.0066 (12)−0.0001 (13)
C30.0377 (14)0.0403 (15)0.0449 (15)−0.0017 (12)−0.0007 (11)0.0066 (12)
C40.0277 (12)0.0388 (15)0.0357 (13)0.0005 (11)0.0033 (10)−0.0010 (11)
C50.0412 (15)0.0377 (16)0.0491 (16)−0.0042 (12)−0.0020 (12)−0.0006 (12)
C60.0491 (17)0.0372 (16)0.0541 (17)0.0052 (13)−0.0004 (13)0.0070 (12)
C70.0495 (18)0.091 (3)0.070 (2)−0.0060 (18)−0.0178 (16)−0.0078 (18)
C80.0288 (12)0.0525 (18)0.0295 (13)0.0012 (12)0.0020 (10)−0.0004 (11)
C90.0363 (15)0.068 (2)0.0481 (17)−0.0031 (14)−0.0054 (12)0.0142 (15)
C100.0419 (16)0.060 (2)0.065 (2)0.0138 (14)0.0010 (14)0.0139 (16)
C110.0425 (15)0.0414 (17)0.0617 (19)0.0044 (13)−0.0017 (13)0.0033 (13)
C120.0308 (13)0.0425 (15)0.0397 (14)−0.0015 (11)0.0029 (11)0.0050 (11)
C130.0395 (15)0.0477 (17)0.0451 (16)0.0044 (13)−0.0012 (12)−0.0029 (12)
C140.0459 (17)0.058 (2)0.0548 (18)−0.0042 (14)−0.0053 (14)−0.0064 (14)
C150.069 (3)0.121 (4)0.116 (4)−0.032 (3)−0.032 (2)0.003 (3)
C160.0338 (14)0.0492 (18)0.0476 (16)−0.0039 (13)−0.0003 (12)0.0055 (13)
C170.0516 (13)0.0577 (15)0.0475 (13)−0.0102 (11)0.0108 (11)−0.0042 (11)
C180.0569 (13)0.0613 (15)0.0499 (13)−0.0086 (11)0.0129 (11)−0.0094 (11)
C190.0542 (13)0.0644 (15)0.0506 (13)−0.0081 (11)0.0157 (11)−0.0053 (11)
C200.0530 (18)0.074 (2)0.0526 (18)−0.0221 (16)0.0170 (15)−0.0016 (15)
C210.0448 (16)0.060 (2)0.0546 (18)−0.0162 (14)0.0063 (14)−0.0073 (14)
C220.0423 (15)0.0474 (17)0.0421 (15)−0.0053 (13)0.0028 (12)0.0003 (12)
C230.0491 (17)0.0527 (19)0.0514 (18)−0.0027 (14)0.0108 (14)0.0084 (14)
C240.0525 (17)0.063 (2)0.0395 (15)0.0116 (15)0.0114 (13)0.0025 (13)
C250.0577 (18)0.058 (2)0.0436 (17)0.0038 (15)0.0017 (14)−0.0129 (13)
C260.0455 (16)0.0506 (18)0.0409 (16)−0.0058 (13)0.0000 (12)−0.0047 (12)
N10.0318 (11)0.0475 (14)0.0391 (12)−0.0038 (9)−0.0001 (9)0.0010 (9)
N20.0329 (11)0.0453 (14)0.0348 (11)−0.0004 (9)0.0003 (9)−0.0005 (9)
O10.0463 (11)0.0509 (13)0.0545 (12)0.0128 (9)−0.0120 (9)0.0022 (9)
O20.0319 (9)0.0566 (12)0.0432 (11)−0.0077 (8)−0.0049 (8)−0.0044 (8)
O30.0617 (15)0.0459 (15)0.136 (2)−0.0108 (11)−0.0391 (15)−0.0075 (13)
O40.0307 (9)0.0524 (12)0.0477 (11)0.0057 (8)−0.0039 (8)−0.0022 (8)
O1W0.0399 (11)0.0351 (12)0.0856 (16)−0.0016 (8)−0.0157 (11)0.0048 (10)
Cu1—O41.9550 (18)C13—C141.383 (4)
Cu1—O21.9567 (18)C13—H130.9300
Cu1—N22.037 (2)C14—H140.9300
Cu1—N12.039 (2)C15—H15A0.9600
Cu1—O1W2.243 (2)C15—H15B0.9600
S1—C11.761 (3)C15—H15C0.9600
S1—C71.793 (4)C16—O31.222 (3)
S2—C91.770 (3)C16—O41.272 (3)
S2—C151.786 (5)C17—N11.342 (3)
C1—C21.387 (4)C17—C181.369 (4)
C1—C61.395 (4)C17—H17A0.9300
C2—C31.391 (3)C18—C191.368 (4)
C2—H20.9300C18—H18A0.9300
C3—C41.384 (3)C19—C201.377 (4)
C3—H30.9300C19—H19A0.9300
C4—C51.384 (4)C20—C211.373 (4)
C4—C81.503 (3)C20—H200.9300
C5—C61.375 (4)C21—N11.333 (3)
C5—H50.9300C21—H210.9300
C6—H60.9300C22—N21.336 (3)
C7—H7A0.9600C22—C231.381 (4)
C7—H7B0.9600C22—H220.9300
C7—H7C0.9600C23—C241.377 (4)
C8—O11.241 (3)C23—H230.9300
C8—O21.271 (3)C24—C251.369 (4)
C9—C101.377 (4)C24—H240.9300
C9—C141.381 (4)C25—C261.387 (4)
C10—C111.371 (4)C25—H250.9300
C10—H100.9300C26—N21.340 (3)
C11—C121.390 (4)C26—H260.9300
C11—H110.9300O1W—H1WA0.826 (18)
C12—C131.371 (4)O1W—H1WB0.832 (18)
C12—C161.515 (3)
O4—Cu1—O2178.45 (8)C9—C14—C13120.3 (3)
O4—Cu1—N288.21 (8)C9—C14—H14119.8
O2—Cu1—N292.39 (8)C13—C14—H14119.8
O4—Cu1—N188.89 (8)S2—C15—H15A109.5
O2—Cu1—N190.73 (8)S2—C15—H15B109.5
N2—Cu1—N1171.03 (8)H15A—C15—H15B109.5
O4—Cu1—O1W88.93 (7)S2—C15—H15C109.5
O2—Cu1—O1W89.59 (7)H15A—C15—H15C109.5
N2—Cu1—O1W94.51 (8)H15B—C15—H15C109.5
N1—Cu1—O1W93.91 (8)O3—C16—O4125.0 (3)
C1—S1—C7103.76 (14)O3—C16—C12119.6 (3)
C9—S2—C15104.84 (17)O4—C16—C12115.3 (2)
C2—C1—C6118.4 (2)N1—C17—C18123.2 (3)
C2—C1—S1124.4 (2)N1—C17—H17A118.4
C6—C1—S1117.2 (2)C18—C17—H17A118.4
C1—C2—C3120.3 (2)C17—C18—C19119.3 (3)
C1—C2—H2119.9C17—C18—H18A120.3
C3—C2—H2119.9C19—C18—H18A120.3
C4—C3—C2121.3 (2)C18—C19—C20118.4 (3)
C4—C3—H3119.4C18—C19—H19A120.8
C2—C3—H3119.4C20—C19—H19A120.8
C3—C4—C5117.9 (2)C21—C20—C19118.9 (3)
C3—C4—C8120.2 (2)C21—C20—H20120.6
C5—C4—C8121.8 (2)C19—C20—H20120.6
C6—C5—C4121.6 (3)N1—C21—C20123.4 (3)
C6—C5—H5119.2N1—C21—H21118.3
C4—C5—H5119.2C20—C21—H21118.3
C5—C6—C1120.6 (3)N2—C22—C23122.5 (3)
C5—C6—H6119.7N2—C22—H22118.8
C1—C6—H6119.7C23—C22—H22118.8
S1—C7—H7A109.5C24—C23—C22119.4 (3)
S1—C7—H7B109.5C24—C23—H23120.3
H7A—C7—H7B109.5C22—C23—H23120.3
S1—C7—H7C109.5C25—C24—C23118.5 (3)
H7A—C7—H7C109.5C25—C24—H24120.7
H7B—C7—H7C109.5C23—C24—H24120.7
O1—C8—O2124.9 (2)C24—C25—C26119.2 (3)
O1—C8—C4118.6 (2)C24—C25—H25120.4
O2—C8—C4116.4 (2)C26—C25—H25120.4
C10—C9—C14118.9 (3)N2—C26—C25122.5 (3)
C10—C9—S2116.4 (2)N2—C26—H26118.8
C14—C9—S2124.7 (3)C25—C26—H26118.8
C11—C10—C9120.5 (3)C21—N1—C17116.7 (2)
C11—C10—H10119.8C21—N1—Cu1120.20 (19)
C9—C10—H10119.8C17—N1—Cu1123.01 (18)
C10—C11—C12120.9 (3)C22—N2—C26117.9 (2)
C10—C11—H11119.5C22—N2—Cu1123.94 (18)
C12—C11—H11119.5C26—N2—Cu1118.18 (18)
C13—C12—C11118.4 (2)C8—O2—Cu1124.47 (17)
C13—C12—C16121.6 (2)C16—O4—Cu1119.04 (17)
C11—C12—C16120.0 (2)Cu1—O1W—H1WA133 (2)
C12—C13—C14120.9 (3)Cu1—O1W—H1WB125 (2)
C12—C13—H13119.5H1WA—O1W—H1WB102 (3)
C14—C13—H13119.5
C7—S1—C1—C23.5 (3)C23—C24—C25—C26−0.8 (4)
C7—S1—C1—C6−176.4 (2)C24—C25—C26—N20.5 (4)
C6—C1—C2—C3−1.9 (4)C20—C21—N1—C171.1 (4)
S1—C1—C2—C3178.1 (2)C20—C21—N1—Cu1−176.6 (2)
C1—C2—C3—C40.9 (4)C18—C17—N1—C21−0.7 (4)
C2—C3—C4—C50.9 (4)C18—C17—N1—Cu1176.9 (2)
C2—C3—C4—C8−175.2 (2)O4—Cu1—N1—C21−57.5 (2)
C3—C4—C5—C6−1.7 (4)O2—Cu1—N1—C21121.0 (2)
C8—C4—C5—C6174.3 (2)N2—Cu1—N1—C21−128.6 (5)
C4—C5—C6—C10.7 (4)O1W—Cu1—N1—C2131.4 (2)
C2—C1—C6—C51.1 (4)O4—Cu1—N1—C17125.0 (2)
S1—C1—C6—C5−178.9 (2)O2—Cu1—N1—C17−56.5 (2)
C3—C4—C8—O19.3 (4)N2—Cu1—N1—C1753.8 (6)
C5—C4—C8—O1−166.5 (2)O1W—Cu1—N1—C17−146.2 (2)
C3—C4—C8—O2−172.8 (2)C23—C22—N2—C26−1.0 (4)
C5—C4—C8—O211.3 (3)C23—C22—N2—Cu1178.0 (2)
C15—S2—C9—C10171.5 (3)C25—C26—N2—C220.4 (4)
C15—S2—C9—C14−8.7 (3)C25—C26—N2—Cu1−178.7 (2)
C14—C9—C10—C11−2.9 (5)O4—Cu1—N2—C22−123.9 (2)
S2—C9—C10—C11176.9 (2)O2—Cu1—N2—C2257.5 (2)
C9—C10—C11—C122.2 (4)N1—Cu1—N2—C22−52.7 (6)
C10—C11—C12—C13−0.4 (4)O1W—Cu1—N2—C22147.3 (2)
C10—C11—C12—C16−179.4 (3)O4—Cu1—N2—C2655.2 (2)
C11—C12—C13—C14−0.6 (4)O2—Cu1—N2—C26−123.38 (19)
C16—C12—C13—C14178.3 (2)N1—Cu1—N2—C26126.4 (5)
C10—C9—C14—C131.8 (4)O1W—Cu1—N2—C26−33.6 (2)
S2—C9—C14—C13−177.9 (2)O1—C8—O2—Cu12.0 (4)
C12—C13—C14—C9−0.1 (4)C4—C8—O2—Cu1−175.66 (15)
C13—C12—C16—O3−169.9 (3)O4—Cu1—O2—C8167 (3)
C11—C12—C16—O39.0 (4)N2—Cu1—O2—C8−80.3 (2)
C13—C12—C16—O49.7 (4)N1—Cu1—O2—C891.3 (2)
C11—C12—C16—O4−171.4 (2)O1W—Cu1—O2—C8−174.8 (2)
N1—C17—C18—C19−0.6 (5)O3—C16—O4—Cu1−2.5 (4)
C17—C18—C19—C201.5 (5)C12—C16—O4—Cu1178.00 (16)
C18—C19—C20—C21−1.2 (5)O2—Cu1—O4—C16−151 (3)
C19—C20—C21—N1−0.1 (5)N2—Cu1—O4—C1696.6 (2)
N2—C22—C23—C240.7 (4)N1—Cu1—O4—C16−74.9 (2)
C22—C23—C24—C250.2 (4)O1W—Cu1—O4—C16−168.8 (2)
D—H···AD—HH···AD···AD—H···A
O1W—H1WA···O3i0.83 (2)1.88 (2)2.701 (3)170 (3)
O1W—H1WB···O1i0.83 (2)1.89 (2)2.721 (3)173 (3)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1W—H1WA⋯O3i0.83 (2)1.88 (2)2.701 (3)170 (3)
O1W—H1WB⋯O1i0.83 (2)1.89 (2)2.721 (3)173 (3)

Symmetry code: (i) .

  2 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Complexation of copper(I) by thioamino acids. Implications for copper speciation in blood plasma.

Authors:  L C Tran-Ho; P M May; G T Hefter
Journal:  J Inorg Biochem       Date:  1997-11-15       Impact factor: 4.155

  2 in total

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