Literature DB >> 21586303

What can spike train distances tell us about the neural code?

Daniel Chicharro1, Thomas Kreuz, Ralph G Andrzejak.   

Abstract

Time scale parametric spike train distances like the Victor and the van Rossum distances are often applied to study the neural code based on neural stimuli discrimination. Different neural coding hypotheses, such as rate or coincidence coding, can be assessed by combining a time scale parametric spike train distance with a classifier in order to obtain the optimal discrimination performance. The time scale for which the responses to different stimuli are distinguished best is assumed to be the discriminative precision of the neural code. The relevance of temporal coding is evaluated by comparing the optimal discrimination performance with the one achieved when assuming a rate code. We here characterize the measures quantifying the discrimination performance, the discriminative precision, and the relevance of temporal coding. Furthermore, we evaluate the information these quantities provide about the neural code. We show that the discriminative precision is too unspecific to be interpreted in terms of the time scales relevant for encoding. Accordingly, the time scale parametric nature of the distances is mainly an advantage because it allows maximizing the discrimination performance across a whole set of measures with different sensitivities determined by the time scale parameter, but not due to the possibility to examine the temporal properties of the neural code.
Copyright © 2011 Elsevier B.V. All rights reserved.

Mesh:

Year:  2011        PMID: 21586303     DOI: 10.1016/j.jneumeth.2011.05.002

Source DB:  PubMed          Journal:  J Neurosci Methods        ISSN: 0165-0270            Impact factor:   2.390


  5 in total

1.  Measures of spike train synchrony for data with multiple time scales.

Authors:  Eero Satuvuori; Mario Mulansky; Nebojsa Bozanic; Irene Malvestio; Fleur Zeldenrust; Kerstin Lenk; Thomas Kreuz
Journal:  J Neurosci Methods       Date:  2017-06-03       Impact factor: 2.390

Review 2.  Comparing Open-Source Toolboxes for Processing and Analysis of Spike and Local Field Potentials Data.

Authors:  Valentina A Unakafova; Alexander Gail
Journal:  Front Neuroinform       Date:  2019-07-30       Impact factor: 4.081

3.  A Spike Train Distance Robust to Firing Rate Changes Based on the Earth Mover's Distance.

Authors:  Duho Sihn; Sung-Phil Kim
Journal:  Front Comput Neurosci       Date:  2019-12-10       Impact factor: 2.380

4.  Spatiotemporal Spike Coding of Behavioral Adaptation in the Dorsal Anterior Cingulate Cortex.

Authors:  Laureline Logiaco; René Quilodran; Emmanuel Procyk; Angelo Arleo
Journal:  PLoS Biol       Date:  2015-08-12       Impact factor: 8.029

5.  Millisecond-scale motor encoding in a cortical vocal area.

Authors:  Claire Tang; Diala Chehayeb; Kyle Srivastava; Ilya Nemenman; Samuel J Sober
Journal:  PLoS Biol       Date:  2014-12-09       Impact factor: 8.029

  5 in total

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