Literature DB >> 21586013

concatenator: sequence data matrices handling made easy.

F Pina-Martins1, O S Paulo.   

Abstract

concatenator is a simple and user-friendly software that implements two very useful functions for phylogenetics data analysis. It concatenates NEXUS files of several fragments in a single NEXUS file ready to be used in phylogenetics software, such as paup and mrbayes and it converts FASTA sequence data files to NEXUS and vice-versa. Additionally, concatenated files can be prepared for partition tests in paup. It is freely available in http://cobig2.fc.ul.pt.
© 2008 The Authors. Journal compilation © 2008 Blackwell Publishing Ltd.

Year:  2008        PMID： 21586013     DOI： 10.1111/j.1755-0998.2008.02164.x

Source DB:  PubMed          Journal:  Mol Ecol Resour        ISSN： 1755-098X            Impact factor:   7.090


  18 in total

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Journal:  BMC Bioinformatics       Date:  2009-10-28       Impact factor: 3.169

2.  Gene flow and gene flux shape evolutionary patterns of variation in Drosophila subobscura.

Authors:  C Pegueroles; C F Aquadro; F Mestres; M Pascual
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4.  Phylogeography and modes of reproduction in diploid and tetraploid halophytes of Limonium species (Plumbaginaceae): evidence for a pattern of geographical parthenogenesis.

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Authors:  V L Nunes; M A Beaumont; R K Butlin; O S Paulo
Journal:  Heredity (Edinb)       Date:  2012-08-15       Impact factor: 3.821

6.  Phylogenetic insights on Mediterranean and Afrotropical Rhipicephalus species (Acari: Ixodida) based on mitochondrial DNA.

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7.  Rhabdias esculentarum n. sp. (Nematoda: Rhabdiasidae) from green frogs of the Rana esculenta species complex in Italy: molecular evidence, morphological description and genetic differentiation from its congeners in frogs and toads.

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Journal:  Syst Parasitol       Date:  2012-05-13       Impact factor: 1.431

8.  Extensive intra-kingdom horizontal gene transfer converging on a fungal fructose transporter gene.

Authors:  Marco A Coelho; Carla Gonçalves; José Paulo Sampaio; Paula Gonçalves
Journal:  PLoS Genet       Date:  2013-06-20       Impact factor: 5.917

9.  Morphological and molecular diagnosis of anisakid nematode larvae from cutlassfish (Trichiurus lepturus) off the coast of Rio de Janeiro, Brazil.

Authors:  Juliana Novo Borges; Luiz Felipe Gullo Cunha; Helena Lúcia Carneiro Santos; Cassiano Monteiro-Neto; Cláudia Portes Santos
Journal:  PLoS One       Date:  2012-07-09       Impact factor: 3.240

10.  New mitochondrial and nuclear evidences support recent demographic expansion and an atypical phylogeographic pattern in the spittlebug Philaenus spumarius (Hemiptera, Aphrophoridae).

Authors:  Ana S B Rodrigues; Sara E Silva; Eduardo Marabuto; Diogo N Silva; Mike R Wilson; Vinton Thompson; Selçuk Yurtsever; Antti Halkka; Paulo A V Borges; José A Quartau; Octávio S Paulo; Sofia G Seabra
Journal:  PLoS One       Date:  2014-06-03       Impact factor: 3.240
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