Literature DB >> 21585881

A high-throughput protocol for extracting high-purity genomic DNA from plants and animals.

R Whitlock1, H Hipperson, M Mannarelli, T Burke.   

Abstract

DNA extraction techniques that employ the reversible binding of DNA to silica via chaotropic salts can deliver high-quality genomic DNA from plant and animal tissues, while avoiding the use of toxic organic solvents. Existing techniques that use this method are either prohibitively expensive, or are applicable to only a restricted set of taxa. Here we describe a cost-effective DNA extraction technique suitable for a wide range of plant and animal taxa that yields microgram quantities of high-molecular-weight genomic DNA at a throughput of 192 samples per day. Our technique is particularly robust for tissue samples that are insoluble or are rapidly discoloured or oxidized in standard DNA extraction buffers. We demonstrate the quality of DNA extracted using this method by applying the amplified fragment length polymorphism technique to plant species.
© 2008 The Authors. Journal compilation © 2008 Blackwell Publishing Ltd.

Entities:  

Year:  2008        PMID: 21585881     DOI: 10.1111/j.1755-0998.2007.02074.x

Source DB:  PubMed          Journal:  Mol Ecol Resour        ISSN: 1755-098X            Impact factor:   7.090


  11 in total

1.  Variation at range margins across multiple spatial scales: environmental temperature, population genetics and metabolomic phenotype.

Authors:  William E Kunin; Philippine Vergeer; Tanaka Kenta; Matthew P Davey; Terry Burke; F Ian Woodward; Paul Quick; Maria-Elena Mannarelli; Nathan S Watson-Haigh; Roger Butlin
Journal:  Proc Biol Sci       Date:  2009-02-25       Impact factor: 5.349

2.  A simplified arthropod genomic-DNA extraction protocol for polymerase chain reaction (PCR)-based specimen identification through barcoding.

Authors:  Venu M Margam; Emma W Gachomo; John H Shukle; Oluwole O Ariyo; Manfredo J Seufferheld; Simeon O Kotchoni
Journal:  Mol Biol Rep       Date:  2010-03-04       Impact factor: 2.316

3.  Variation for host range within and among populations of the parasitic plant Striga hermonthica.

Authors:  K Huang; R Whitlock; M C Press; J D Scholes
Journal:  Heredity (Edinb)       Date:  2011-07-06       Impact factor: 3.821

4.  Rapid genetic divergence in response to 15 years of simulated climate change.

Authors:  Catherine H Ravenscroft; Raj Whitlock; Jason D Fridley
Journal:  Glob Chang Biol       Date:  2015-08-27       Impact factor: 10.863

5.  Predictive ability of genomic selection models in a multi-population perennial ryegrass training set using genotyping-by-sequencing.

Authors:  Marty J Faville; Siva Ganesh; Mingshu Cao; M Z Zulfi Jahufer; Timothy P Bilton; H Sydney Easton; Douglas L Ryan; Jason A K Trethewey; M Philip Rolston; Andrew G Griffiths; Roger Moraga; Casey Flay; Jana Schmidt; Rachel Tan; Brent A Barrett
Journal:  Theor Appl Genet       Date:  2017-12-20       Impact factor: 5.699

6.  Assessment of the potential for gene flow from transgenic maize (Zea mays L.) to eastern gamagrass (Tripsacum dactyloides L.).

Authors:  Moon-Sub Lee; Eric K Anderson; Duška Stojšin; Marc A McPherson; Baltazar Baltazar; Michael J Horak; Juan Manuel de la Fuente; Kunsheng Wu; James H Crowley; A Lane Rayburn; D K Lee
Journal:  Transgenic Res       Date:  2017-05-02       Impact factor: 2.788

7.  A genome scan and linkage disequilibrium analysis among chromosomal races of the Australian grasshopper Vandiemenella viatica.

Authors:  Ben Jackson; Takeshi Kawakami; Steve Cooper; Juan Galindo; Roger Butlin
Journal:  PLoS One       Date:  2012-10-10       Impact factor: 3.240

8.  Authentication of Herbal Supplements Using Next-Generation Sequencing.

Authors:  Natalia V Ivanova; Maria L Kuzmina; Thomas W A Braukmann; Alex V Borisenko; Evgeny V Zakharov
Journal:  PLoS One       Date:  2016-05-26       Impact factor: 3.240

9.  Seed Transmission of Epichloë Endophytes in Lolium perenne Is Heavily Influenced by Host Genetics.

Authors:  Milan Gagic; Marty J Faville; Wei Zhang; Natasha T Forester; M Philip Rolston; Richard D Johnson; Siva Ganesh; John P Koolaard; H Sydney Easton; Debbie Hudson; Linda J Johnson; Christina D Moon; Christine R Voisey
Journal:  Front Plant Sci       Date:  2018-11-13       Impact factor: 5.753

10.  Protocol: a versatile, inexpensive, high-throughput plant genomic DNA extraction method suitable for genotyping-by-sequencing.

Authors:  Craig B Anderson; Benjamin K Franzmayr; Soon Won Hong; Anna C Larking; Tracey C van Stijn; Rachel Tan; Roger Moraga; Marty J Faville; Andrew G Griffiths
Journal:  Plant Methods       Date:  2018-08-28       Impact factor: 4.993

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