Literature DB >> 21585834

bels: backward elimination locus selection for studies of mixture composition or individual assignment.

Jeffrey F Bromaghin1.   

Abstract

Methods of evaluating loci in studies of mixture composition or individual assignment are largely based on performance characteristics of individual loci. Synergisms between loci are not exploited. Loci are often evaluated based on their ability to resolve individual populations, even though multipopulation aggregations are more commonly of interest. In addition, measures of locus performance may indirectly relate to investigative objectives. A new computer program, bels, offers an alternative that addresses these limitations and may be preferable to existing methods in some applications. The algorithm is illustrated using Yukon River chum salmon (Oncorhynchus keta) data. No claim to original US government works.

Entities:  

Year:  2008        PMID: 21585834     DOI: 10.1111/j.1471-8286.2007.02010.x

Source DB:  PubMed          Journal:  Mol Ecol Resour        ISSN: 1755-098X            Impact factor:   7.090


  7 in total

1.  Molecular markers for variation in spawning date in a hatchery population of rainbow trout (Oncorhynchus mykiss).

Authors:  M S Allen; M M Ferguson; R G Danzmann
Journal:  Mar Biotechnol (NY)       Date:  2013-10-11       Impact factor: 3.619

2.  Evaluation of approaches for identifying population informative markers from high density SNP chips.

Authors:  Samantha Wilkinson; Pamela Wiener; Alan L Archibald; Andy Law; Robert D Schnabel; Stephanie D McKay; Jeremy F Taylor; Rob Ogden
Journal:  BMC Genet       Date:  2011-05-13       Impact factor: 2.797

3.  Sockeye salmon repatriation leads to population re-establishment and rapid introgression with native kokanee.

Authors:  Andrew J Veale; Michael A Russello
Journal:  Evol Appl       Date:  2016-10-21       Impact factor: 5.183

4.  A comparison of SNP and STR loci for delineating population structure and performing individual genetic assignment.

Authors:  Kevin A Glover; Michael M Hansen; Sigbjørn Lien; Thomas D Als; Bjørn Høyheim; Oystein Skaala
Journal:  BMC Genet       Date:  2010-01-06       Impact factor: 2.797

5.  Rank and order: evaluating the performance of SNPs for individual assignment in a non-model organism.

Authors:  Caroline G Storer; Carita E Pascal; Steven B Roberts; William D Templin; Lisa W Seeb; James E Seeb
Journal:  PLoS One       Date:  2012-11-20       Impact factor: 3.240

6.  Applications of random forest feature selection for fine-scale genetic population assignment.

Authors:  Emma V A Sylvester; Paul Bentzen; Ian R Bradbury; Marie Clément; Jon Pearce; John Horne; Robert G Beiko
Journal:  Evol Appl       Date:  2017-09-14       Impact factor: 5.183

7.  Mining whole genome sequence data to efficiently attribute individuals to source populations.

Authors:  Francisco J Pérez-Reche; Ovidiu Rotariu; Bruno S Lopes; Ken J Forbes; Norval J C Strachan
Journal:  Sci Rep       Date:  2020-07-22       Impact factor: 4.379

  7 in total

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