Literature DB >> 21585773

COMPUTER PROGRAMS: onesamp: a program to estimate effective population size using approximate Bayesian computation.

David A Tallmon1, Ally Koyuk, Gordon Luikart, Mark A Beaumont.   

Abstract

The estimation of effective population size from one sample of genotypes has been problematic because most estimators have been proven imprecise or biased. We developed a web-based program, onesamp that uses approximate Bayesian computation to estimate effective population size from a sample of microsatellite genotypes. onesamp requires an input file of sampled individuals' microsatellite genotypes along with information about several sampling and biological parameters. onesamp provides an estimate of effective population size, along with 95% credible limits. We illustrate the use of onesamp with an example data set from a re-introduced population of ibex Capra ibex.
© 2007 The Authors.

Entities:  

Year:  2008        PMID： 21585773     DOI： 10.1111/j.1471-8286.2007.01997.x

Source DB:  PubMed          Journal:  Mol Ecol Resour        ISSN： 1755-098X            Impact factor:   7.090


  83 in total

1.  Exploring the causes of small effective population sizes in cyst nematodes using artificial Globodera pallida populations.

Authors:  Josselin Montarry; Sylvie Bardou-Valette; Romain Mabon; Pierre-Loup Jan; Sylvain Fournet; Eric Grenier; Eric J Petit
Journal:  Proc Biol Sci       Date:  2019-01-16       Impact factor: 5.349

2.  Genetic status and timing of a weevil introduction to Santa Cruz Island, Galapagos.

Authors:  Hoi-Fei Mok; Courtney C Stepien; Maryska Kaczmarek; Lázaro Roque Albelo; Andrea S Sequeira
Journal:  J Hered       Date:  2014-01-07       Impact factor: 2.645

3.  Simple life-history traits explain key effective population size ratios across diverse taxa.

Authors:  Robin S Waples; Gordon Luikart; James R Faulkner; David A Tallmon
Journal:  Proc Biol Sci       Date:  2013-08-07       Impact factor: 5.349

4.  A longitudinal genetic survey identifies temporal shifts in the population structure of Dutch house sparrows.

Authors:  L Cousseau; M Husemann; R Foppen; C Vangestel; L Lens
Journal:  Heredity (Edinb)       Date:  2016-06-08       Impact factor: 3.821

5.  Estimating contemporary effective population size on the basis of linkage disequilibrium in the face of migration.

Authors:  Robin S Waples; Phillip R England
Journal:  Genetics       Date:  2011-08-11       Impact factor: 4.562

6.  How Ebola impacts genetics of Western lowland gorilla populations.

Authors:  Pascaline J Le Gouar; Dominique Vallet; Laetitia David; Magdalena Bermejo; Sylvain Gatti; Florence Levréro; Eric J Petit; Nelly Ménard
Journal:  PLoS One       Date:  2009-12-18       Impact factor: 3.240

7.  skelesim: an extensible, general framework for population genetic simulation in R.

Authors:  Christian M Parobek; Frederick I Archer; Michelle E DePrenger-Levin; Sean M Hoban; Libby Liggins; Allan E Strand
Journal:  Mol Ecol Resour       Date:  2016-11-16       Impact factor: 7.090

8.  Population structure and effective/census population size ratio in threatened three-spined stickleback populations from an isolated river basin in northwest Spain.

Authors:  A Pérez-Figueroa; C Fernández; R Amaro; M Hermida; E San Miguel
Journal:  Genetica       Date:  2015-04-28       Impact factor: 1.082

Review 9.  Inference of population history by coupling exploratory and model-driven phylogeographic analyses.

Authors:  Ryan C Garrick; Adalgisa Caccone; Paul Sunnucks
Journal:  Int J Mol Sci       Date:  2010-03-24       Impact factor: 5.923

10.  Phylogeography and population structure of Glossina fuscipes fuscipes in Uganda: implications for control of tsetse.

Authors:  Jon S Beadell; Chaz Hyseni; Patrick P Abila; Rogers Azabo; John C K Enyaru; Johnson O Ouma; Yassir O Mohammed; Loyce M Okedi; Serap Aksoy; Adalgisa Caccone
Journal:  PLoS Negl Trop Dis       Date:  2010-03-16
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