Literature DB >> 21585759

Novel nuclear intron-spanning primers for Arecaceae evolutionary biology.

Christine D Bacon1, F Alex Feltus, Andrew H Paterson, C Donovan Bailey.   

Abstract

In this study, 96 nuclear 'conserved intron-scanning primers' were screened across subfamilies the Arecaceae (palms) for potential use in research focused on palm evolutionary biology. Primers were evaluated based on their ability to amplify single polymerase chain reaction products in Arecaceae, the clarity of sequencing reads, and the interspecific variability observed. Ultimately, the results suggest that: (i) seven of the loci are likely to be suitable when comparing non-Arecaceae outgroups and Arecaceae ingroups; (ii) seven loci may be of use when comparing subfamilies of Arecaceae; and (iii) four of the loci may be of use when comparing closely related genera.
© 2007 Blackwell Publishing Ltd No claim to original US government works.

Year:  2008        PMID: 21585759     DOI: 10.1111/j.1471-8286.2007.01928.x

Source DB:  PubMed          Journal:  Mol Ecol Resour        ISSN: 1755-098X            Impact factor:   7.090


  5 in total

1.  Phylogenetic relationships among arecoid palms (Arecaceae: Arecoideae).

Authors:  William J Baker; Maria V Norup; James J Clarkson; Thomas L P Couvreur; John L Dowe; Carl E Lewis; Jean-Christophe Pintaud; Vincent Savolainen; Tomas Wilmot; Mark W Chase
Journal:  Ann Bot       Date:  2011-02-16       Impact factor: 4.357

2.  Phylogenetic utility of the nuclear genes AGAMOUS 1 and PHYTOCHROME B in palms (Arecaceae): an example within Bactridinae.

Authors:  Bertha Ludeña; Nathalie Chabrillange; Frédérique Aberlenc-Bertossi; Hélène Adam; James W Tregear; Jean-Christophe Pintaud
Journal:  Ann Bot       Date:  2011-08-09       Impact factor: 4.357

3.  Evaluating multiple criteria for species delimitation: an empirical example using Hawaiian palms (Arecaceae: Pritchardia).

Authors:  Christine D Bacon; Miles J McKenna; Mark P Simmons; Warren L Wagner
Journal:  BMC Evol Biol       Date:  2012-02-22       Impact factor: 3.260

4.  Phylogenetic properties of 50 nuclear loci in Medicago (Leguminosae) generated using multiplexed sequence capture and next-generation sequencing.

Authors:  Filipe de Sousa; Yann J K Bertrand; Stephan Nylinder; Bengt Oxelman; Jonna S Eriksson; Bernard E Pfeil
Journal:  PLoS One       Date:  2014-10-17       Impact factor: 3.240

5.  Molecular genetic analysis of two native desert palm genera, Washingtonia and Brahea, from the Baja California Peninsula and Guadalupe Island.

Authors:  Anastasia Klimova; Joseph I Hoffman; Jesus N Gutierrez-Rivera; Jose Leon de la Luz; Alfredo Ortega-Rubio
Journal:  Ecol Evol       Date:  2017-05-30       Impact factor: 2.912

  5 in total

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