Literature DB >> 21584730

CCAAT/enhancer binding protein-beta negatively regulates the expression of glycerol-3-phosphate dehydrogenase 1 in pig PK-15 cells.

Yunzhen Gao1, Yuchun Pan.   

Abstract

Soluble glycerol-3-phosphate dehydrogenase 1 (GPD1, EC 1.1.1.8) plays important roles in the synthesis of triacylglycerol and in the glycerol-3-phosphate shutter. Though GPD1 is expressed in most adult tissues, little is known about the regulation of its expression. In this study, we analyzed the characters, organization and core region of the promoter of pig GPD1 gene by in silico analysis and activity detection of deletion mutants. We also identified and testified the negative regulation effect of C/EBP β on pig GPD1 gene by Chromatin immunoprecipitation (ChIP) assay and over-expression experiments in cultured pig kidney cells. Compared to that of human, pig GPD1 gene promoter has three conserved regions and one deletion region. In silico analysis indicated that pig GPD1 promoter was TATA-less with at least 3 CpG islands of over 200 bp in length and over 60% in GC content. The activity detection of deletion mutants suggested that the essential elements required for the optimal promoter activity scatter in the promoter region, while the core promoter region was from -422 bp to -1 bp. Chromatin immunoprecipitation (ChIP) assay results indicated that C/EBP β had plenty of binding sites in pig GPD1 promoter with the common cis-element (5'- TKNNGCAAK -3'). The over-expression examination of C/EBP β showed that the expression of GPD1 was negatively regulated by C/EBP β in pig kidney cells. Overall, our study revealed that the pig GPD1 promoter is a TATA-less promoter, and in promoter region, the binding sites of C/EBP β share common motif of (5'-TKNNGCAAK -3'). We also showed that pig GPD1 gene is regulated negatively by C/EBP β in cultured kidney cells.

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Year:  2011        PMID: 21584730     DOI: 10.1007/s13353-011-0050-4

Source DB:  PubMed          Journal:  J Appl Genet        ISSN: 1234-1983            Impact factor:   3.240


  33 in total

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Authors:  Jennifer E F Butler; James T Kadonaga
Journal:  Genes Dev       Date:  2002-10-15       Impact factor: 11.361

2.  Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes.

Authors:  Kouichi Kimura; Ai Wakamatsu; Yutaka Suzuki; Toshio Ota; Tetsuo Nishikawa; Riu Yamashita; Jun-ichi Yamamoto; Mitsuo Sekine; Katsuki Tsuritani; Hiroyuki Wakaguri; Shizuko Ishii; Tomoyasu Sugiyama; Kaoru Saito; Yuko Isono; Ryotaro Irie; Norihiro Kushida; Takahiro Yoneyama; Rie Otsuka; Katsuhiro Kanda; Takahide Yokoi; Hiroshi Kondo; Masako Wagatsuma; Katsuji Murakawa; Shinichi Ishida; Tadashi Ishibashi; Asako Takahashi-Fujii; Tomoo Tanase; Keiichi Nagai; Hisashi Kikuchi; Kenta Nakai; Takao Isogai; Sumio Sugano
Journal:  Genome Res       Date:  2005-12-12       Impact factor: 9.043

3.  C/EBPbeta, when expressed from the C/ebpalpha gene locus, can functionally replace C/EBPalpha in liver but not in adipose tissue.

Authors:  S S Chen; J F Chen; P F Johnson; V Muppala; Y H Lee
Journal:  Mol Cell Biol       Date:  2000-10       Impact factor: 4.272

4.  Clustering of DNA sequences in human promoters.

Authors:  Peter C FitzGerald; Andrey Shlyakhtenko; Alain A Mir; Charles Vinson
Journal:  Genome Res       Date:  2004-07-15       Impact factor: 9.043

5.  Enhanced glycerol 3-phosphate dehydrogenase activity in adipose tissue of obese humans.

Authors:  Julian Swierczynski; Lidia Zabrocka; Elzbieta Goyke; Sylwia Raczynska; Walenty Adamonis; Zbigniew Sledzinski
Journal:  Mol Cell Biochem       Date:  2003-12       Impact factor: 3.396

6.  Induction of the C/EBP beta gene by dexamethasone and glucagon in primary-cultured rat hepatocytes.

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Journal:  J Biochem       Date:  1996-03       Impact factor: 3.387

7.  Neuronal influence on glial enzyme expression: evidence from chimeric mouse cerebellum.

Authors:  M Fisher; R J Mullen
Journal:  Neuron       Date:  1988-04       Impact factor: 17.173

8.  The role of mRNA levels and cellular localization in controlling sn-glycerol-3-phosphate dehydrogenase expression in tissues of the mouse.

Authors:  P L Ratner; M Fisher; D Burkart; J R Cook; L P Kozak
Journal:  J Biol Chem       Date:  1981-04-10       Impact factor: 5.157

9.  Enzymic and metabolic anomalies in islets of diabetic rats: relationship to B cell mass.

Authors:  M H Giroix; D Baetens; J Rasschaert; V Leclercq-Meyer; A Sener; B Portha; W J Malaisse
Journal:  Endocrinology       Date:  1992-05       Impact factor: 4.736

10.  Complex organizational structure of the genome revealed by genome-wide analysis of single and alternative promoters in Drosophila melanogaster.

Authors:  Qianqian Zhu; Marc S Halfon
Journal:  BMC Genomics       Date:  2009-01-07       Impact factor: 3.969

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