Literature DB >> 21583996

3-Amino-5-methyl-5-(4-pyrid-yl)hydantoin.

Hristo Varbanov, Rossen Buyukliev, Adriana Bakalova, Alexander Roller.   

Abstract

The title compound, 3-amino-5-methyl-5-(4-pyrid-yl)imid-azol-idine-2,4-dione, C(9)H(10)N(4)O(2), was obtained by reaction of 5-methyl-5-(4-pyrid-yl)hydantoin with hydrazine. It crystallizes as a racemate in the tetra-gonal space group I4(1)/a with one mol-ecule in the asymmetric unit. The dihedral angle between the pyridine ring and the five-membered hydantoin ring is 47.99 (3)° In the crystal structure, mol-ecules are joined in a three-dimensional hydrogen-bonded network by N-H⋯N and N-H⋯O links.

Entities:  

Year:  2009        PMID: 21583996      PMCID: PMC2977653          DOI: 10.1107/S1600536809011404

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the biological activity of hydantoin derivatives and their metal complexes, see: Rajic et al. (2006 ▶); Bazil et al. (1998 ▶); Bakalova et al. (2005 ▶, 2008 ▶, 2009 ▶). For crystal structures of other 3-amino substituted hydantoins and their metal complexes, see: Shivachev et al. (2005 ▶); Bakalova et al. (2007 ▶). For the synthesis of 5-methyl-5-(4-pyridyl)-hydantoin, see: Chu & Teague (1958 ▶). For the preparation of 3-amino­hydantoins, see: Davidson (1964 ▶).

Experimental

Crystal data

C9H10N4O2 M = 206.21 Tetragonal, a = 12.8282 (5) Å c = 22.9016 (17) Å V = 3768.8 (3) Å3 Z = 16 Mo Kα radiation μ = 0.11 mm−1 T = 100 K 0.50 × 0.50 × 0.50 mm

Data collection

Bruker X8 APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2005 ▶) T min = 0.948, T max = 0.948 51879 measured reflections 2765 independent reflections 2179 reflections with I > 2σ(I) R int = 0.076

Refinement

R[F 2 > 2σ(F 2)] = 0.046 wR(F 2) = 0.127 S = 1.03 2765 reflections 144 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.56 e Å−3 Δρmin = −0.44 e Å−3 Data collection: APEX2 (Bruker, 2005 ▶); cell refinement: SAINT (Bruker, 2005 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536809011404/at2752sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809011404/at2752Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C9H10N4O2Dx = 1.454 Mg m3
Mr = 206.21Mo Kα radiation, λ = 0.71073 Å
Tetragonal, I41/aCell parameters from 847 reflections
Hall symbol: -I 4adθ = 2.9–29.5°
a = 12.8282 (5) ŵ = 0.11 mm1
c = 22.9016 (17) ÅT = 100 K
V = 3768.8 (3) Å3Block, colourless
Z = 160.50 × 0.50 × 0.50 mm
F(000) = 1728
Bruker X8 APEXII CCD diffractometer2765 independent reflections
Radiation source: fine-focus sealed tube2179 reflections with I > 2σ(I)
graphiteRint = 0.076
ω scansθmax = 30.1°, θmin = 2.9°
Absorption correction: multi-scan (SADABS; Bruker, 2005)h = −18→18
Tmin = 0.948, Tmax = 0.948k = −18→18
51879 measured reflectionsl = −32→32
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.046Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.127H atoms treated by a mixture of independent and constrained refinement
S = 1.03w = 1/[σ2(Fo2) + (0.0631P)2 + 3.9566P] where P = (Fo2 + 2Fc2)/3
2765 reflections(Δ/σ)max < 0.001
144 parametersΔρmax = 0.56 e Å3
0 restraintsΔρmin = −0.44 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F^2^ against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F^2^, conventional R-factors R are based on F, with F set to zero for negative F^2^. The threshold expression of F^2^ > σ(F^2^) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F^2^ are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.59104 (8)0.59567 (7)0.06315 (4)0.0171 (2)
O20.68145 (8)0.42948 (8)0.23252 (4)0.0203 (2)
N10.58287 (9)0.06249 (9)0.13055 (5)0.0176 (2)
N20.67304 (9)0.43740 (9)0.07949 (5)0.0150 (2)
H20.68200.41720.04310.018*
N30.62479 (8)0.53105 (8)0.15592 (5)0.0128 (2)
N40.57993 (10)0.61113 (9)0.18907 (5)0.0181 (2)
H4A0.5062 (15)0.6163 (15)0.1787 (8)0.027 (5)*
H4B0.6100 (16)0.6781 (17)0.1806 (9)0.036 (5)*
C10.70691 (10)0.37686 (10)0.12997 (5)0.0136 (3)
C20.65758 (10)0.26869 (10)0.13127 (5)0.0131 (2)
C30.63039 (11)0.21921 (10)0.07925 (6)0.0165 (3)
H30.63650.25470.04300.020*
C40.59419 (11)0.11717 (11)0.08121 (6)0.0178 (3)
H40.57640.08430.04540.021*
C50.60863 (11)0.11133 (11)0.18034 (6)0.0179 (3)
H50.60080.07420.21600.021*
C60.64606 (11)0.21278 (10)0.18292 (6)0.0165 (3)
H60.66350.24350.21940.020*
C70.82617 (11)0.36654 (11)0.13212 (7)0.0201 (3)
H7A0.85780.43600.13120.030*
H7B0.85020.32620.09840.030*
H7C0.84660.33080.16820.030*
C80.67014 (10)0.44623 (10)0.18059 (6)0.0139 (3)
C90.62667 (10)0.52740 (10)0.09462 (5)0.0132 (3)
U11U22U33U12U13U23
O10.0197 (5)0.0162 (5)0.0154 (5)0.0016 (4)−0.0004 (3)0.0034 (3)
O20.0299 (6)0.0178 (5)0.0131 (5)0.0007 (4)−0.0040 (4)0.0002 (4)
N10.0152 (5)0.0153 (5)0.0223 (6)−0.0003 (4)0.0004 (4)0.0004 (4)
N20.0195 (5)0.0145 (5)0.0109 (5)0.0020 (4)0.0019 (4)0.0013 (4)
N30.0136 (5)0.0132 (5)0.0117 (5)0.0002 (4)0.0011 (4)−0.0005 (4)
N40.0194 (6)0.0169 (6)0.0180 (6)0.0016 (4)0.0023 (4)−0.0030 (4)
C10.0153 (6)0.0130 (6)0.0126 (6)0.0006 (4)0.0000 (4)0.0010 (4)
C20.0114 (5)0.0127 (6)0.0151 (6)0.0014 (4)0.0006 (4)0.0005 (4)
C30.0177 (6)0.0172 (6)0.0146 (6)0.0010 (5)−0.0012 (5)0.0008 (5)
C40.0178 (6)0.0172 (6)0.0183 (6)0.0000 (5)−0.0019 (5)−0.0027 (5)
C50.0193 (6)0.0162 (6)0.0182 (6)−0.0008 (5)0.0013 (5)0.0031 (5)
C60.0189 (6)0.0160 (6)0.0145 (6)−0.0008 (5)0.0005 (5)0.0006 (5)
C70.0140 (6)0.0175 (6)0.0286 (7)−0.0002 (5)0.0006 (5)0.0027 (5)
C80.0140 (6)0.0134 (6)0.0143 (6)−0.0025 (4)−0.0013 (4)−0.0001 (4)
C90.0120 (6)0.0151 (6)0.0126 (6)−0.0019 (5)0.0011 (4)0.0004 (4)
O1—C91.2229 (16)C1—C81.5355 (18)
O2—C81.2174 (16)C1—C71.5364 (19)
N1—C41.3378 (18)C2—C61.3913 (18)
N1—C51.3425 (18)C2—C31.3942 (18)
N2—C91.3442 (17)C3—C41.3897 (19)
N2—C11.4589 (16)C3—H30.9500
N2—H20.8800C4—H40.9500
N3—C81.3571 (17)C5—C61.3884 (19)
N3—N41.4010 (16)C5—H50.9500
N3—C91.4047 (17)C6—H60.9500
N4—H4A0.978 (19)C7—H7A0.9800
N4—H4B0.96 (2)C7—H7B0.9800
C1—C21.5254 (18)C7—H7C0.9800
C4—N1—C5116.49 (12)N1—C4—C3123.89 (13)
C9—N2—C1112.63 (11)N1—C4—H4118.1
C9—N2—H2123.7C3—C4—H4118.1
C1—N2—H2123.7N1—C5—C6123.97 (13)
C8—N3—N4122.57 (11)N1—C5—H5118.0
C8—N3—C9112.46 (10)C6—C5—H5118.0
N4—N3—C9124.96 (11)C5—C6—C2118.94 (12)
N3—N4—H4A108.4 (11)C5—C6—H6120.5
N3—N4—H4B112.4 (12)C2—C6—H6120.5
H4A—N4—H4B106.2 (17)C1—C7—H7A109.5
N2—C1—C2112.09 (10)C1—C7—H7B109.5
N2—C1—C8101.43 (10)H7A—C7—H7B109.5
C2—C1—C8112.65 (10)C1—C7—H7C109.5
N2—C1—C7111.58 (11)H7A—C7—H7C109.5
C2—C1—C7109.52 (11)H7B—C7—H7C109.5
C8—C1—C7109.37 (11)O2—C8—N3126.83 (12)
C6—C2—C3117.73 (12)O2—C8—C1126.77 (12)
C6—C2—C1121.97 (11)N3—C8—C1106.38 (11)
C3—C2—C1120.09 (11)O1—C9—N2128.95 (12)
C4—C3—C2119.00 (12)O1—C9—N3123.97 (12)
C4—C3—H3120.5N2—C9—N3107.08 (11)
C2—C3—H3120.5
C9—N2—C1—C2121.59 (12)N4—N3—C8—O2−2.7 (2)
C9—N2—C1—C81.19 (14)C9—N3—C8—O2178.47 (13)
C9—N2—C1—C7−115.16 (12)N4—N3—C8—C1178.74 (11)
N2—C1—C2—C6−155.89 (12)C9—N3—C8—C1−0.11 (14)
C8—C1—C2—C6−42.24 (17)N2—C1—C8—O2−179.19 (13)
C7—C1—C2—C679.71 (15)C2—C1—C8—O260.81 (17)
N2—C1—C2—C329.50 (16)C7—C1—C8—O2−61.23 (17)
C8—C1—C2—C3143.15 (12)N2—C1—C8—N3−0.61 (13)
C7—C1—C2—C3−94.90 (14)C2—C1—C8—N3−120.62 (11)
C6—C2—C3—C4−0.49 (19)C7—C1—C8—N3117.35 (12)
C1—C2—C3—C4174.35 (12)C1—N2—C9—O1179.01 (13)
C5—N1—C4—C30.0 (2)C1—N2—C9—N3−1.30 (14)
C2—C3—C4—N10.4 (2)C8—N3—C9—O1−179.43 (12)
C4—N1—C5—C6−0.4 (2)N4—N3—C9—O11.8 (2)
N1—C5—C6—C20.4 (2)C8—N3—C9—N20.86 (14)
C3—C2—C6—C50.1 (2)N4—N3—C9—N2−177.95 (11)
C1—C2—C6—C5−174.61 (12)
D—H···AD—HH···AD···AD—H···A
N2—H2···O2i0.882.262.9184 (15)131
N2—H2···N4i0.882.693.526159
N4—H4A···O1ii0.977 (19)2.139 (19)3.0676 (16)158.07
N4—H4B···O1iii0.96 (2)2.17 (2)3.1003 (16)162.23
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N2—H2⋯N4i0.882.693.526159
N2—H2⋯O2i0.882.262.9184 (15)131
N4—H4A⋯O1ii0.977 (19)2.139 (19)3.0676 (16)158.07
N4—H4B⋯O1iii0.96 (2)2.17 (2)3.1003 (16)162.23

Symmetry codes: (i) ; (ii) ; (iii) .

  6 in total

1.  Dimorphism in 3'-aminocyclohexanespiro-5'-hydantoin.

Authors:  Boris Shivachev; Rosica Petrova; Emilia Naydenova
Journal:  Acta Crystallogr C       Date:  2005-07-30       Impact factor: 1.172

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  Synthesis, physicochemical and in vitro pharmacological investigation of new platinum (II) complexes with some cycloalkanespiro-5'-hydantoins.

Authors:  Adriana Bakalova; Rossen Buyukliev; Georgi Momekov; Darvin Ivanov; Dimitar Todorov; Spiro Konstantinov; Margarita Karaivanova
Journal:  Eur J Med Chem       Date:  2005-03-03       Impact factor: 6.514

Review 4.  Advances in the medical treatment of epilepsy.

Authors:  C W Bazil; T A Pedley
Journal:  Annu Rev Med       Date:  1998       Impact factor: 13.739

5.  Hydantoin derivatives of L- and D-amino acids: synthesis and evaluation of their antiviral and antitumoral activity.

Authors:  Zrinka Rajic; Branka Zorc; Silvana Raic-Malic; Katja Ester; Marijeta Kralj; Kresimir Pavelic; Jan Balzarini; Erik De Clercq; Mladen Mintas
Journal:  Molecules       Date:  2006-11-01       Impact factor: 4.411

6.  Synthesis, characterization and biological activity of Pt(II) and Pt(IV) complexes with 5-methyl-5(4-pyridyl)-2,4-imidazolidenedione.

Authors:  Adriana Bakalova; Hristo Varbanov; Rossen Buyukliev; Georgi Momekov; Dilyan Ferdinandov; Spiro Konstantinov; Darvin Ivanov
Journal:  Eur J Med Chem       Date:  2007-07-15       Impact factor: 6.514

  6 in total

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